CX047180

Overview
NameCX047180
Unique NameCX047180
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length889
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047180 vs. ExPASy Swiss-Prot
Match: RL10_METBU (50S ribosomal protein L10e OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.372e-24
Identity = 60/167 (35.93%), Postives = 99/167 (59.28%), Query Frame = -3
Query:  336 KKTGKVFRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 836
            +K   ++R +K++ + + ++  GVP  ++  +D+G K     +FP  + L++ E+  +   ALEAARI  N+ M   AG+  FH+++RV+P  VLR NK  + AGADR+ +GMR A+GK   T ARV+  Q + ++     +   A++ALRRA  K P    I+V +
Sbjct:    3 RKPASMYRNVKSRSFTRRKYMGGVPGSQVIHFDMGNKTA---DFPVKITLLADERCQIRHTALEAARITANRAMTTAAGRSGFHMKLRVYPHEVLRENKQATGAGADRVSSGMRAAYGKNVSTAARVSARQKIFTISVNKEHFIIAKDALRRAGQKLPTPVTIVVDQ 166          
BLAST of CX047180 vs. ExPASy Swiss-Prot
Match: RL10_METAC (50S ribosomal protein L10e OS=Methanosarcina acetivorans GN=rpl10e PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.404e-24
Identity = 62/165 (37.58%), Postives = 96/165 (58.18%), Query Frame = -3
Query:  342 KKTGKVFRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIV 836
            +K G ++R ++ + + + ++  GVP  ++  YD+G K      FP  + L+  EK  +   ALEAARI  N+++    GK  F++++RV+P  V+R NK  + AGADR+ +GMR AFGK  GT ARV   Q + +V  +  N   A+EAL  A  K P   +I+V
Sbjct:    3 RKPGSMYRNVRQRSFTRRKYMGGVPGSQVIHYDMGDKAN--TSFPVKISLIVEEKCQIRHTALEAARITANRHLVADTGKMGFYMKLRVYPHEVIRENKQATGAGADRVSSGMRRAFGKNVGTAARVKPMQKIFTVAVEKQNFKAAKEALWHAGQKLPTPCRIVV 165          
BLAST of CX047180 vs. ExPASy Swiss-Prot
Match: RL10_THESM (50S ribosomal protein L10e OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.752e-24
Identity = 61/157 (38.85%), Postives = 86/157 (54.78%), Query Frame = -3
Query:  363 KTGKVFRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFP 833
            +  K+ R +    Y +  + RG P P+I I+D+G       +F F V L + E   +   ALEAAR   N+Y++K  G+  FH ++RV+PF VLR N M +   ADR   GMR  FGKP G  AR+   Q +L+VR    +   A  A++RA  KFP
Sbjct:    4 RPAKIDRYVDKPAYTRREYIRGAPGPRITIFDMG---NPAGDFEFEVSLHTAEPVQIRQNALEAARTQLNRYLSKNVGRSNFHYKIRVYPFQVLRENPMATGRKADRYGNGMRRPFGKPIGLAARLKKDQKILTVRVNKQHLKFALAAMKRASMKFP 157          
BLAST of CX047180 vs. ExPASy Swiss-Prot
Match: RL10_THEON (50S ribosomal protein L10e OS=Thermococcus onnurineus (strain NA1) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.513e-24
Identity = 62/159 (38.99%), Postives = 86/159 (54.09%), Query Frame = -3
Query:  363 GKKTGKVFRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFP 839
            G +  K+ R +    Y +  + RG P PKI I+D+G       EF + V L + +   +   ALEA RI  N+Y+ K  G+  +H ++RV+PF VLR N M +   ADR   GMR  FGKP G  ARV   Q +L+V   + +   A EA+RRA  K P
Sbjct:    2 GLRPAKIDRDVDKPAYTRREYIRGAPGPKITIFDMGNLSA---EFQYEVSLHAEQAMQIRQNALEAIRIQVNRYLQKNVGRSNYHFKIRVYPFQVLRENPMATGRKADRYGNGMRRPFGKPIGLAARVKKDQKILTVWVNEGHLKFALEAMRRAAMKLP 157          
BLAST of CX047180 vs. ExPASy Swiss-Prot
Match: RL10_SULAC (50S ribosomal protein L10e OS=Sulfolobus acidocaldarius GN=rpl10e PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 9.812e-24
Identity = 65/167 (38.92%), Postives = 100/167 (59.88%), Query Frame = -3
Query:  339 KTGKVFRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAK-YAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV-AIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVS 833
            + G+ +R+     Y +  +  G+P PKI  + +G       ++ + + L++ EK  +   ALEAAR+   KY++K  A +  F L V  +P HV+R NKM++ AGADRLQ GMR +FGKP GT AR+  +G++++ VR K  +   A+EAL+ A  K P R KI +S
Sbjct:    4 RPGRCYRKFSGPAYTRREYIPGIPMPKITKFVMGNVN---GDYDYELRLITTEKGQIRHNALEAARVIALKYLSKKLASEQNFALVVTKYPHHVIRENKMMAFAGADRLQDGMRLSFGKPIGTAARLEKLGELVMYVRVKKEHLEAAKEALKIASSKLPIRTKIEIS 167          
BLAST of CX047180 vs. ExPASy Swiss-Prot
Match: RL10_PYRFU (50S ribosomal protein L10e OS=Pyrococcus furiosus GN=rpl10e PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 9.812e-24
Identity = 62/157 (39.49%), Postives = 84/157 (53.50%), Query Frame = -3
Query:  363 KTGKVFRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFP 833
            +  K+ R +    Y +  + RG P PKI I+D+G       +F F V L + E   +   ALEAAR   N+Y+ K  G+  +H ++RV+PF VLR N M +   ADR   GMR  FGKP G  AR+   Q +LS+R    +   A E  RRA  KFP
Sbjct:    4 RPAKIDRYVDKPAYTRREYIRGAPGPKITIFDMG---NPAGDFEFEVSLHTAEPVQIRQNALEAARQQVNRYLQKNVGRSNYHFKIRVYPFQVLRENPMATGRKADRYGNGMRRPFGKPIGLAARLKKDQKILSIRVNRQHLKFAIEGARRAAMKFP 157          
BLAST of CX047180 vs. ExPASy Swiss-Prot
Match: RL10_METMJ (50S ribosomal protein L10e OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 9.812e-24
Identity = 64/167 (38.32%), Postives = 92/167 (55.09%), Query Frame = -3
Query:  336 KKTGKVFRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 836
            +K  K++R +  K Y +  +  GVP  KI  +D+G      +++P  + +V  E   +   ALEAARI  N+ + K  G+  FHL++R  P HVLR NK  + AGADR+  GMR AFGK  GT ARV  GQ + SV         A+ +L+R  +K P   +I+  R
Sbjct:    3 RKPAKMYRNLAKKAYTRREYMGGVPGSKIVQFDMGNL---TEDYPVELSIVVDETCQIRHTALEAARIGINRQLQKEVGRANFHLKIRTFPHHVLRENKQATGAGADRVSEGMRLAFGKAVGTAARVEKGQKVFSVWTSPQYVDKAKVSLKRGIYKLPTPARIVEER 166          
BLAST of CX047180 vs. ExPASy Swiss-Prot
Match: RL10_METLZ (50S ribosomal protein L10e OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 9.812e-24
Identity = 61/165 (36.97%), Postives = 95/165 (57.58%), Query Frame = -3
Query:  342 KKTGKVFRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIV 836
            +K  +++R +  K Y +  +  GVP  K+  +D+G      ++FP  +HL + E   +   A+EAARI  N+ + K  G++ FHL++R +P HVLR +K  + AGADR+  GMR AFGK  GT ARVA  Q + +V         A++AL  + +K P   ++IV
Sbjct:    3 RKPARMYRNLAKKAYCRREYMGGVPGLKVVQFDMGNLS---EDFPVAIHLEALEACQIRHTAMEAARINMNRRLMKTVGRNNFHLKIRAYPHHVLREHKQATGAGADRVSEGMRLAFGKAVGTAARVAPRQRVFTVWTTPQYVDQAKDALLHSGYKLPTPVRVIV 164          
BLAST of CX047180 vs. ExPASy Swiss-Prot
Match: RL10_PYRHO (50S ribosomal protein L10e OS=Pyrococcus horikoshii GN=rpl10e PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.281e-23
Identity = 62/157 (39.49%), Postives = 84/157 (53.50%), Query Frame = -3
Query:  363 KTGKVFRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFP 833
            +  K+ R +    Y +  + RG P PKI I+D+G       +F F V L + E   +   ALEAAR   N+Y+ K  G+  +H ++RV+PF VLR N M +   ADR   GMR  FGKP G  AR+   Q +LS+R    +   A E  RRA  KFP
Sbjct:    4 RPAKIDRYVDKPAYTRREYIRGAPGPKITIFDMG---NPAGDFEFEVALHTAEPVQIRQNALEAARQQVNRYLQKNVGRSNYHFKIRVYPFQVLRENPMATGRKADRYGNGMRRPFGKPIGLAARLKRDQKILSIRVNRQHLKFAIEGARRAAMKFP 157          
BLAST of CX047180 vs. ExPASy Swiss-Prot
Match: RL10_METS5 (50S ribosomal protein L10e OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.186e-23
Identity = 63/166 (37.95%), Postives = 95/166 (57.23%), Query Frame = -3
Query:  342 KTGKVFRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDA-FHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVA-IGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIV 833
            + G+ +R      Y +  +  GVP PKI  + +G  KK  D   F V L++ +   +   ALEAAR+   K M    G +  F+L V  +P HV+R NKM++ AGADRLQ GMR +FGKP GT AR+  +G +++++R K  +   A++A + A  K P   +I+V
Sbjct:    4 RPGRCYRHFSGPAYTRKEYIPGVPQPKITKFTMGDHKKDYD---FEVRLLTKQIGQIRHNALEAARVIALKQMTSMVGNETDFYLYVTKYPHHVIRENKMMAFAGADRLQDGMRLSFGKPIGTAARITKLGDLIMAIRVKKEHLEFAKKAFKVASSKLPLDTEIVV 166          
The following BLAST results are available for this feature:
BLAST of CX047180 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RL10_METBU3.372e-2435.9350S ribosomal protein L10e OS=Methanococcoides bur... [more]
RL10_METAC4.404e-2437.5850S ribosomal protein L10e OS=Methanosarcina aceti... [more]
RL10_THESM5.752e-2438.8550S ribosomal protein L10e OS=Thermococcus sibiric... [more]
RL10_THEON7.513e-2438.9950S ribosomal protein L10e OS=Thermococcus onnurin... [more]
RL10_SULAC9.812e-2438.9250S ribosomal protein L10e OS=Sulfolobus acidocald... [more]
RL10_PYRFU9.812e-2439.4950S ribosomal protein L10e OS=Pyrococcus furiosus ... [more]
RL10_METMJ9.812e-2438.3250S ribosomal protein L10e OS=Methanoculleus maris... [more]
RL10_METLZ9.812e-2436.9750S ribosomal protein L10e OS=Methanocorpusculum l... [more]
RL10_PYRHO1.281e-2339.4950S ribosomal protein L10e OS=Pyrococcus horikoshi... [more]
RL10_METS52.186e-2337.9550S ribosomal protein L10e OS=Metallosphaera sedul... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS09_12F04_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12F04-K7-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047180 ID=CX047180; Name=CX047180; organism=Citrus sinensis; type=EST; length=889bp
TTTCATATAGAAGAGTGCAAATTGCAAATCACTAAAACAACTGCAAGGAT
CACATAGTTAAACCAAAGAAACATGTCACTTCAACTTGAGAAATCCAGTT
CAACTGAGAAAAGGTACGAAATGGAAAATAATAAACTAGACAGTAGACCC
AGCTCTGCTATTTTGAGACAGTAAATATCTTAGGTTGTTGCTTCCAGGAA
AGCTCTTCCAGGTTGACGTTGAGCCAAAGGACCATGACATCCGAGAAGCT
TGGCATTCACACCATCTGGGACAATCCTGTTCTCCGACTTCCACCGCAGA
TAATCAGCACGGCTGAACTTGGTAAATCCCCATTTCCTGCTGACAATAAT
CTTTTGACGACCAGGAAACTTGAACTTAGCACGGCGAAGGGCCTCCTGAG
CATGGTGGCTGTTACTATCCTTGCAACGGACAGAAAGCAAGACCTGCCCG
ATAGCAACACGAGCACAGGTTCCTTGGGGCTTTCCAAAAGCACCCCTCAT
TCCAGTCTGGAGCCTATCAGCCCCAGCACACGAAAGCATCTTGTTAATAC
GCAGAACATGGAAGGGGTGCACCCTCACTCGCAAATGGAAAGCATCCTTG
CCGGCGTACTTGGCCATGTACTTGTTGCAAGCGATACGGGCAGCTTCCAA
GGCCTCGCTCGACACGTTCTCCTTCTCCCAACTGACGAGGTGAACGCAGA
AGGGGAACTCGTCGACGCCTTTCTTCTTCATCCCGACATCGTAGATTCTG
ATCTTGGGATCGGGGACACCGCGGCAAAAGCGGGACTTTGGGTAGGGTTT
GTTCTTGATTTGGCGGAACACCTTGCCGGTCTTCTTCCCATGGCGAGCGT
TCGTGTTCGGTCTCAGCTATTCTCTCTTTCTGCTCGGCT
back to top