CX047180
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX047180 vs. ExPASy Swiss-Prot
Match: RL10_METBU (50S ribosomal protein L10e OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl10e PE=3 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 3.372e-24 Identity = 60/167 (35.93%), Postives = 99/167 (59.28%), Query Frame = -3 Query: 336 KKTGKVFRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 836 +K ++R +K++ + + ++ GVP ++ +D+G K +FP + L++ E+ + ALEAARI N+ M AG+ FH+++RV+P VLR NK + AGADR+ +GMR A+GK T ARV+ Q + ++ + A++ALRRA K P I+V + Sbjct: 3 RKPASMYRNVKSRSFTRRKYMGGVPGSQVIHFDMGNKTA---DFPVKITLLADERCQIRHTALEAARITANRAMTTAAGRSGFHMKLRVYPHEVLRENKQATGAGADRVSSGMRAAYGKNVSTAARVSARQKIFTISVNKEHFIIAKDALRRAGQKLPTPVTIVVDQ 166
BLAST of CX047180 vs. ExPASy Swiss-Prot
Match: RL10_METAC (50S ribosomal protein L10e OS=Methanosarcina acetivorans GN=rpl10e PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 4.404e-24 Identity = 62/165 (37.58%), Postives = 96/165 (58.18%), Query Frame = -3 Query: 342 KKTGKVFRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIV 836 +K G ++R ++ + + + ++ GVP ++ YD+G K FP + L+ EK + ALEAARI N+++ GK F++++RV+P V+R NK + AGADR+ +GMR AFGK GT ARV Q + +V + N A+EAL A K P +I+V Sbjct: 3 RKPGSMYRNVRQRSFTRRKYMGGVPGSQVIHYDMGDKAN--TSFPVKISLIVEEKCQIRHTALEAARITANRHLVADTGKMGFYMKLRVYPHEVIRENKQATGAGADRVSSGMRRAFGKNVGTAARVKPMQKIFTVAVEKQNFKAAKEALWHAGQKLPTPCRIVV 165
BLAST of CX047180 vs. ExPASy Swiss-Prot
Match: RL10_THESM (50S ribosomal protein L10e OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rpl10e PE=3 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 5.752e-24 Identity = 61/157 (38.85%), Postives = 86/157 (54.78%), Query Frame = -3 Query: 363 KTGKVFRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFP 833 + K+ R + Y + + RG P P+I I+D+G +F F V L + E + ALEAAR N+Y++K G+ FH ++RV+PF VLR N M + ADR GMR FGKP G AR+ Q +L+VR + A A++RA KFP Sbjct: 4 RPAKIDRYVDKPAYTRREYIRGAPGPRITIFDMG---NPAGDFEFEVSLHTAEPVQIRQNALEAARTQLNRYLSKNVGRSNFHYKIRVYPFQVLRENPMATGRKADRYGNGMRRPFGKPIGLAARLKKDQKILTVRVNKQHLKFALAAMKRASMKFP 157
BLAST of CX047180 vs. ExPASy Swiss-Prot
Match: RL10_THEON (50S ribosomal protein L10e OS=Thermococcus onnurineus (strain NA1) GN=rpl10e PE=3 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 7.513e-24 Identity = 62/159 (38.99%), Postives = 86/159 (54.09%), Query Frame = -3 Query: 363 GKKTGKVFRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFP 839 G + K+ R + Y + + RG P PKI I+D+G EF + V L + + + ALEA RI N+Y+ K G+ +H ++RV+PF VLR N M + ADR GMR FGKP G ARV Q +L+V + + A EA+RRA K P Sbjct: 2 GLRPAKIDRDVDKPAYTRREYIRGAPGPKITIFDMGNLSA---EFQYEVSLHAEQAMQIRQNALEAIRIQVNRYLQKNVGRSNYHFKIRVYPFQVLRENPMATGRKADRYGNGMRRPFGKPIGLAARVKKDQKILTVWVNEGHLKFALEAMRRAAMKLP 157
BLAST of CX047180 vs. ExPASy Swiss-Prot
Match: RL10_SULAC (50S ribosomal protein L10e OS=Sulfolobus acidocaldarius GN=rpl10e PE=3 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 9.812e-24 Identity = 65/167 (38.92%), Postives = 100/167 (59.88%), Query Frame = -3 Query: 339 KTGKVFRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAK-YAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV-AIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVS 833 + G+ +R+ Y + + G+P PKI + +G ++ + + L++ EK + ALEAAR+ KY++K A + F L V +P HV+R NKM++ AGADRLQ GMR +FGKP GT AR+ +G++++ VR K + A+EAL+ A K P R KI +S Sbjct: 4 RPGRCYRKFSGPAYTRREYIPGIPMPKITKFVMGNVN---GDYDYELRLITTEKGQIRHNALEAARVIALKYLSKKLASEQNFALVVTKYPHHVIRENKMMAFAGADRLQDGMRLSFGKPIGTAARLEKLGELVMYVRVKKEHLEAAKEALKIASSKLPIRTKIEIS 167
BLAST of CX047180 vs. ExPASy Swiss-Prot
Match: RL10_PYRFU (50S ribosomal protein L10e OS=Pyrococcus furiosus GN=rpl10e PE=3 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 9.812e-24 Identity = 62/157 (39.49%), Postives = 84/157 (53.50%), Query Frame = -3 Query: 363 KTGKVFRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFP 833 + K+ R + Y + + RG P PKI I+D+G +F F V L + E + ALEAAR N+Y+ K G+ +H ++RV+PF VLR N M + ADR GMR FGKP G AR+ Q +LS+R + A E RRA KFP Sbjct: 4 RPAKIDRYVDKPAYTRREYIRGAPGPKITIFDMG---NPAGDFEFEVSLHTAEPVQIRQNALEAARQQVNRYLQKNVGRSNYHFKIRVYPFQVLRENPMATGRKADRYGNGMRRPFGKPIGLAARLKKDQKILSIRVNRQHLKFAIEGARRAAMKFP 157
BLAST of CX047180 vs. ExPASy Swiss-Prot
Match: RL10_METMJ (50S ribosomal protein L10e OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl10e PE=3 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 9.812e-24 Identity = 64/167 (38.32%), Postives = 92/167 (55.09%), Query Frame = -3 Query: 336 KKTGKVFRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 836 +K K++R + K Y + + GVP KI +D+G +++P + +V E + ALEAARI N+ + K G+ FHL++R P HVLR NK + AGADR+ GMR AFGK GT ARV GQ + SV A+ +L+R +K P +I+ R Sbjct: 3 RKPAKMYRNLAKKAYTRREYMGGVPGSKIVQFDMGNL---TEDYPVELSIVVDETCQIRHTALEAARIGINRQLQKEVGRANFHLKIRTFPHHVLRENKQATGAGADRVSEGMRLAFGKAVGTAARVEKGQKVFSVWTSPQYVDKAKVSLKRGIYKLPTPARIVEER 166
BLAST of CX047180 vs. ExPASy Swiss-Prot
Match: RL10_METLZ (50S ribosomal protein L10e OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl10e PE=3 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 9.812e-24 Identity = 61/165 (36.97%), Postives = 95/165 (57.58%), Query Frame = -3 Query: 342 KKTGKVFRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIV 836 +K +++R + K Y + + GVP K+ +D+G ++FP +HL + E + A+EAARI N+ + K G++ FHL++R +P HVLR +K + AGADR+ GMR AFGK GT ARVA Q + +V A++AL + +K P ++IV Sbjct: 3 RKPARMYRNLAKKAYCRREYMGGVPGLKVVQFDMGNLS---EDFPVAIHLEALEACQIRHTAMEAARINMNRRLMKTVGRNNFHLKIRAYPHHVLREHKQATGAGADRVSEGMRLAFGKAVGTAARVAPRQRVFTVWTTPQYVDQAKDALLHSGYKLPTPVRVIV 164
BLAST of CX047180 vs. ExPASy Swiss-Prot
Match: RL10_PYRHO (50S ribosomal protein L10e OS=Pyrococcus horikoshii GN=rpl10e PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 1.281e-23 Identity = 62/157 (39.49%), Postives = 84/157 (53.50%), Query Frame = -3 Query: 363 KTGKVFRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFP 833 + K+ R + Y + + RG P PKI I+D+G +F F V L + E + ALEAAR N+Y+ K G+ +H ++RV+PF VLR N M + ADR GMR FGKP G AR+ Q +LS+R + A E RRA KFP Sbjct: 4 RPAKIDRYVDKPAYTRREYIRGAPGPKITIFDMG---NPAGDFEFEVALHTAEPVQIRQNALEAARQQVNRYLQKNVGRSNYHFKIRVYPFQVLRENPMATGRKADRYGNGMRRPFGKPIGLAARLKRDQKILSIRVNRQHLKFAIEGARRAAMKFP 157
BLAST of CX047180 vs. ExPASy Swiss-Prot
Match: RL10_METS5 (50S ribosomal protein L10e OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rpl10e PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 2.186e-23 Identity = 63/166 (37.95%), Postives = 95/166 (57.23%), Query Frame = -3 Query: 342 KTGKVFRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDA-FHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVA-IGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIV 833 + G+ +R Y + + GVP PKI + +G KK D F V L++ + + ALEAAR+ K M G + F+L V +P HV+R NKM++ AGADRLQ GMR +FGKP GT AR+ +G +++++R K + A++A + A K P +I+V Sbjct: 4 RPGRCYRHFSGPAYTRKEYIPGVPQPKITKFTMGDHKKDYD---FEVRLLTKQIGQIRHNALEAARVIALKQMTSMVGNETDFYLYVTKYPHHVIRENKMMAFAGADRLQDGMRLSFGKPIGTAARITKLGDLIMAIRVKKEHLEFAKKAFKVASSKLPLDTEIVV 166 The following BLAST results are available for this feature:
BLAST of CX047180 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 92
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Sequences
The
following sequences are available for this feature:
EST sequence >CX047180 ID=CX047180; Name=CX047180; organism=Citrus sinensis; type=EST; length=889bpback to top |