CX047180

Overview
NameCX047180
Unique NameCX047180
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length889
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047180 vs. ExPASy Swiss-Prot
Match: RL10_SULTO (50S ribosomal protein L10e OS=Sulfolobus tokodaii GN=rpl10e PE=3 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 7.774e-21
Identity = 61/164 (37.20%), Postives = 89/164 (54.27%), Query Frame = -3
Query:  348 KTGKVFRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDA-FHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV-AIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKI 833
            + G+ +R      Y +  +  GVP PKI  + +G      D   + + LV+ EK  +   ALEAAR+   K +    G D  F L V  +P HV+R NKM++ AGADRLQ GMR +FGKP GT AR+  +G +++  + K  +   A++A   A  K P + KI
Sbjct:    4 RPGRCYRHFSGPAYTRKEYIPGVPMPKITKFTMGNVNGNYD---YELRLVALEKGQIRHNALEAARVLALKQLTNKTGSDQNFALIVLKYPHHVIRENKMMAFAGADRLQDGMRLSFGKPIGTAARIERLGDIIMIAKVKKEHLEIAKKAFEAAASKIPLKTKI 164          
BLAST of CX047180 vs. ExPASy Swiss-Prot
Match: RL10_SULIY (50S ribosomal protein L10e OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.326e-20
Identity = 59/164 (35.98%), Postives = 91/164 (55.49%), Query Frame = -3
Query:  348 KTGKVFRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKD-AFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV-AIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKI 833
            + G+ +R      Y +  +  G+P PKI  +  G       ++ + V L++ E   +   ALEA R    K + K  G + +F + +  +P HVLR NKM++ AGADRLQ GMR +FG P GT AR+  +G++L+ V+ K  +   A+EAL+ A  K P R +I
Sbjct:    4 RPGRCYRHFSGPAYTRKEYIPGIPQPKITKFTSGNPN---GDYDYEVRLITTEIGQIRHNALEAVRTITLKTLTKRTGSETSFFMWILKYPHHVLRENKMMAFAGADRLQDGMRLSFGTPIGTAARIEKLGEILIVVKVKKEHLDFAKEALKIASKKLPLRTRI 164          
BLAST of CX047180 vs. ExPASy Swiss-Prot
Match: RL10_SULIN (50S ribosomal protein L10e OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.326e-20
Identity = 59/164 (35.98%), Postives = 91/164 (55.49%), Query Frame = -3
Query:  348 KTGKVFRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKD-AFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV-AIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKI 833
            + G+ +R      Y +  +  G+P PKI  +  G       ++ + V L++ E   +   ALEA R    K + K  G + +F + +  +P HVLR NKM++ AGADRLQ GMR +FG P GT AR+  +G++L+ V+ K  +   A+EAL+ A  K P R +I
Sbjct:    4 RPGRCYRHFSGPAYTRKEYIPGIPQPKITKFTSGNPN---GDYDYEVRLITTEIGQIRHNALEAVRTITLKTLTKRTGSETSFFMWILKYPHHVLRENKMMAFAGADRLQDGMRLSFGTPIGTAARIEKLGEILIVVKVKKEHLDFAKEALKIASKKLPLRTRI 164          
BLAST of CX047180 vs. ExPASy Swiss-Prot
Match: RL10_SULIM (50S ribosomal protein L10e OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.326e-20
Identity = 59/164 (35.98%), Postives = 91/164 (55.49%), Query Frame = -3
Query:  348 KTGKVFRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKD-AFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV-AIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKI 833
            + G+ +R      Y +  +  G+P PKI  +  G       ++ + V L++ E   +   ALEA R    K + K  G + +F + +  +P HVLR NKM++ AGADRLQ GMR +FG P GT AR+  +G++L+ V+ K  +   A+EAL+ A  K P R +I
Sbjct:    4 RPGRCYRHFSGPAYTRKEYIPGIPQPKITKFTSGNPN---GDYDYEVRLITTEIGQIRHNALEAVRTITLKTLTKRTGSETSFFMWILKYPHHVLRENKMMAFAGADRLQDGMRLSFGTPIGTAARIEKLGEILIVVKVKKEHLDFAKEALKIASKKLPLRTRI 164          
BLAST of CX047180 vs. ExPASy Swiss-Prot
Match: RL10_SULIL (50S ribosomal protein L10e OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.326e-20
Identity = 59/164 (35.98%), Postives = 91/164 (55.49%), Query Frame = -3
Query:  348 KTGKVFRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKD-AFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV-AIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKI 833
            + G+ +R      Y +  +  G+P PKI  +  G       ++ + V L++ E   +   ALEA R    K + K  G + +F + +  +P HVLR NKM++ AGADRLQ GMR +FG P GT AR+  +G++L+ V+ K  +   A+EAL+ A  K P R +I
Sbjct:    4 RPGRCYRHFSGPAYTRKEYIPGIPQPKITKFTSGNPN---GDYDYEVRLITTEIGQIRHNALEAVRTITLKTLTKRTGSETSFFMWILKYPHHVLRENKMMAFAGADRLQDGMRLSFGTPIGTAARIEKLGEILIVVKVKKEHLDFAKEALKIASKKLPLRTRI 164          
BLAST of CX047180 vs. ExPASy Swiss-Prot
Match: RL10_SULIK (50S ribosomal protein L10e OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.326e-20
Identity = 59/164 (35.98%), Postives = 91/164 (55.49%), Query Frame = -3
Query:  348 KTGKVFRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKD-AFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV-AIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKI 833
            + G+ +R      Y +  +  G+P PKI  +  G       ++ + V L++ E   +   ALEA R    K + K  G + +F + +  +P HVLR NKM++ AGADRLQ GMR +FG P GT AR+  +G++L+ V+ K  +   A+EAL+ A  K P R +I
Sbjct:    4 RPGRCYRHFSGPAYTRKEYIPGIPQPKITKFTSGNPN---GDYDYEVRLITTEIGQIRHNALEAVRTITLKTLTKRTGSETSFFMWILKYPHHVLRENKMMAFAGADRLQDGMRLSFGTPIGTAARIEKLGEILIVVKVKKEHLDFAKEALKIASKKLPLRTRI 164          
BLAST of CX047180 vs. ExPASy Swiss-Prot
Match: RL10_SULIA (50S ribosomal protein L10e OS=Sulfolobus islandicus (strain M.16.27) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.326e-20
Identity = 59/164 (35.98%), Postives = 91/164 (55.49%), Query Frame = -3
Query:  348 KTGKVFRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKD-AFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV-AIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKI 833
            + G+ +R      Y +  +  G+P PKI  +  G       ++ + V L++ E   +   ALEA R    K + K  G + +F + +  +P HVLR NKM++ AGADRLQ GMR +FG P GT AR+  +G++L+ V+ K  +   A+EAL+ A  K P R +I
Sbjct:    4 RPGRCYRHFSGPAYTRKEYIPGIPQPKITKFTSGNPN---GDYDYEVRLITTEIGQIRHNALEAVRTITLKTLTKRTGSETSFFMWILKYPHHVLRENKMMAFAGADRLQDGMRLSFGTPIGTAARIEKLGEILIVVKVKKEHLDFAKEALKIASKKLPLRTRI 164          
BLAST of CX047180 vs. ExPASy Swiss-Prot
Match: RL10_HALWD (50S ribosomal protein L10e OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.732e-20
Identity = 56/173 (32.37%), Postives = 97/173 (56.07%), Query Frame = -3
Query:  339 KTGKVFRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRA--KFKFPGR------QKIIVS 833
            K   ++R++    Y +  +  G+P  KI  +++G  + G  ++P  + L   E+  +   +LE+AR++ N+ M K  G+D + + +R  P  +LR NK  + AGADR+  GMR AFGKP GT AR+   + + ++ C+  ++  A++ LRRA  K   P R      QK+++S
Sbjct:    4 KPASMYRKLSKPSYTRRDYVTGIPGSKIAQHNMGNLQTGPQDYPVQISLRIEEECQIRHGSLESARLSANRTMLKQVGQDNYKMVLRKFPHQILRENKQATGAGADRVSDGMRQAFGKPVGTAARIQQNERVFTIYCEVDDASVAKDGLRRAYNKMSPPCRIDVEKGQKLLIS 176          
BLAST of CX047180 vs. ExPASy Swiss-Prot
Match: RL10_SULSO (50S ribosomal protein L10e OS=Sulfolobus solfataricus GN=rpl10e PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.262e-20
Identity = 58/164 (35.37%), Postives = 91/164 (55.49%), Query Frame = -3
Query:  348 KTGKVFRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKD-AFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV-AIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKI 833
            + G+ +R      Y +  +  G+P PKI  +  G       ++ + V L++ E   +   ALEA R    K ++K  G + +F + +  +P HVLR NKM++ AGADRLQ GMR +FG P GT AR+  +G+ L+ ++ K  +   A+EAL+ A  K P R +I
Sbjct:    4 RPGRCYRHFSGPAYTRKEYIPGIPQPKITKFTSGNPN---GDYDYEVRLITTEIGQIRHNALEAVRTLTLKTLSKKTGSETSFFMWILKYPHHVLRENKMMAFAGADRLQDGMRLSFGTPIGTAARIEKLGETLIVIKVKKEHLEFAKEALKIASKKLPLRTRI 164          
BLAST of CX047180 vs. ExPASy Swiss-Prot
Match: RL10_HALLT (50S ribosomal protein L10e OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 7.277e-19
Identity = 52/166 (31.33%), Postives = 87/166 (52.41%), Query Frame = -3
Query:  336 KTGKVFRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 833
            K   ++R I    Y +  +  G+P  KI  +++G      D++P  + L   E+  +   +LE++R++ N+++ K  G+  + + +R  P  V+R NK  + AGADR+  GMR AFGKP GT AR+    ++ +  C    +   +EA RRA  K     +I V R
Sbjct:    4 KPASMYRTIDKPSYTRREYITGIPGSKIAQHNMGDLSAEPDDYPVQISLRVEEELQIRHGSLESSRLSANRHLIKELGEGNYKMTLRKFPHQVIRENKQATGAGADRVSDGMRQAFGKPVGTAARLNKDDIVFTAYCDVEQASVVKEAFRRAYNKLSPPCRITVDR 169          
The following BLAST results are available for this feature:
BLAST of CX047180 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RL10_SULTO7.774e-2137.2050S ribosomal protein L10e OS=Sulfolobus tokodaii ... [more]
RL10_SULIY1.326e-2035.9850S ribosomal protein L10e OS=Sulfolobus islandicu... [more]
RL10_SULIN1.326e-2035.9850S ribosomal protein L10e OS=Sulfolobus islandicu... [more]
RL10_SULIM1.326e-2035.9850S ribosomal protein L10e OS=Sulfolobus islandicu... [more]
RL10_SULIL1.326e-2035.9850S ribosomal protein L10e OS=Sulfolobus islandicu... [more]
RL10_SULIK1.326e-2035.9850S ribosomal protein L10e OS=Sulfolobus islandicu... [more]
RL10_SULIA1.326e-2035.9850S ribosomal protein L10e OS=Sulfolobus islandicu... [more]
RL10_HALWD1.732e-2032.3750S ribosomal protein L10e OS=Haloquadratum walsby... [more]
RL10_SULSO2.262e-2035.3750S ribosomal protein L10e OS=Sulfolobus solfatari... [more]
RL10_HALLT7.277e-1931.3350S ribosomal protein L10e OS=Halorubrum lacusprof... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_12F04_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12F04-K7-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047180 ID=CX047180; Name=CX047180; organism=Citrus sinensis; type=EST; length=889bp
TTTCATATAGAAGAGTGCAAATTGCAAATCACTAAAACAACTGCAAGGAT
CACATAGTTAAACCAAAGAAACATGTCACTTCAACTTGAGAAATCCAGTT
CAACTGAGAAAAGGTACGAAATGGAAAATAATAAACTAGACAGTAGACCC
AGCTCTGCTATTTTGAGACAGTAAATATCTTAGGTTGTTGCTTCCAGGAA
AGCTCTTCCAGGTTGACGTTGAGCCAAAGGACCATGACATCCGAGAAGCT
TGGCATTCACACCATCTGGGACAATCCTGTTCTCCGACTTCCACCGCAGA
TAATCAGCACGGCTGAACTTGGTAAATCCCCATTTCCTGCTGACAATAAT
CTTTTGACGACCAGGAAACTTGAACTTAGCACGGCGAAGGGCCTCCTGAG
CATGGTGGCTGTTACTATCCTTGCAACGGACAGAAAGCAAGACCTGCCCG
ATAGCAACACGAGCACAGGTTCCTTGGGGCTTTCCAAAAGCACCCCTCAT
TCCAGTCTGGAGCCTATCAGCCCCAGCACACGAAAGCATCTTGTTAATAC
GCAGAACATGGAAGGGGTGCACCCTCACTCGCAAATGGAAAGCATCCTTG
CCGGCGTACTTGGCCATGTACTTGTTGCAAGCGATACGGGCAGCTTCCAA
GGCCTCGCTCGACACGTTCTCCTTCTCCCAACTGACGAGGTGAACGCAGA
AGGGGAACTCGTCGACGCCTTTCTTCTTCATCCCGACATCGTAGATTCTG
ATCTTGGGATCGGGGACACCGCGGCAAAAGCGGGACTTTGGGTAGGGTTT
GTTCTTGATTTGGCGGAACACCTTGCCGGTCTTCTTCCCATGGCGAGCGT
TCGTGTTCGGTCTCAGCTATTCTCTCTTTCTGCTCGGCT
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