CX047179

Overview
NameCX047179
Unique NameCX047179
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length817
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047179 vs. ExPASy Swiss-Prot
Match: RL10_HUMAN (60S ribosomal protein L10 OS=Homo sapiens GN=RPL10 PE=1 SV=4)

HSP 1 Score: 304.679 bits (779), Expect = 4.078e-82
Identity = 146/206 (70.87%), Postives = 165/206 (80.10%), Query Frame = 1
Query:   52 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 669
            MGRRPARCYR  KNKPYPKSRFCRGVPD KIRI+D+G KK  VDEFP C H+VS E E +SSEALEAARI  NKYM K  GKD FH+RVR+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++    +E R++PDG   K +   GPL
Sbjct:    1 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAEKRLIPDGCGVKYIPNRGPL 206          
BLAST of CX047179 vs. ExPASy Swiss-Prot
Match: RL10_CAEEL (60S ribosomal protein L10 OS=Caenorhabditis elegans GN=rpl-10 PE=2 SV=1)

HSP 1 Score: 303.908 bits (777), Expect = 6.956e-82
Identity = 147/208 (70.67%), Postives = 166/208 (79.81%), Query Frame = 1
Query:   52 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQ 675
            MGRRPARCYR IKNKPYPKSRFCRGVPD KIRI+D+G K+  VD FP CVH++S E+E++SSEALEAARI  NKYM K  GKD FHLRVR HPFHV RINKMLSCAGADRLQTGMRGA+GKPQG  ARV IG +L S+R K+ N  HA EA RRAKFKFPGRQ I+ SRKWGFTK+ R DY R ++E R+  DGV  +L   HGPL +
Sbjct:    1 MGRRPARCYRYIKNKPYPKSRFCRGVPDAKIRIFDLGNKRANVDTFPACVHMMSNEREHLSSEALEAARICANKYMVKNCGKDGFHLRVRKHPFHVTRINKMLSCAGADRLQTGMRGAYGKPQGLVARVDIGDILFSMRIKEGNVKHAIEAFRRAKFKFPGRQIIVSSRKWGFTKWDREDYERMRAEGRLRSDGVGVQLQREHGPLTK 208          
BLAST of CX047179 vs. ExPASy Swiss-Prot
Match: RL10_PONAB (60S ribosomal protein L10 OS=Pongo abelii GN=RPL10 PE=2 SV=3)

HSP 1 Score: 303.523 bits (776), Expect = 9.085e-82
Identity = 146/206 (70.87%), Postives = 164/206 (79.61%), Query Frame = 1
Query:   52 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 669
            MGRRPARCYR  KNKPYPKSRFCRGVPD KIRI+D+G KK  VDEFP C H+VS E E +SSEALEAARI  NKYM K  GKD FH+RVR+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++    +E R++PDG   K     GPL
Sbjct:    1 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAEKRLIPDGCGVKYTPNRGPL 206          
BLAST of CX047179 vs. ExPASy Swiss-Prot
Match: RL10_DICDI (60S ribosomal protein L10 OS=Dictyostelium discoideum GN=rpl10 PE=3 SV=2)

HSP 1 Score: 302.753 bits (774), Expect = 1.550e-81
Identity = 140/208 (67.31%), Postives = 171/208 (82.21%), Query Frame = 1
Query:   52 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQ 675
            MGRRPARCYR  KNKPY KSR+CRGVPD KIRI+D+G KK   DEFP CVHL+S EKE +SSEA+EA RI+CNKY++K  GKD+FH+RVRVHP+HVLRINKMLSCAGADRLQTGMRGAFGKP GT ARV IGQ++ S+R +D+   +  EALRR+ +KFPGRQKI+VS+KWGFT ++R  Y + K++ R++ DG N K++  HG LAQ
Sbjct:    1 MGRRPARCYRYCKNKPYIKSRYCRGVPDAKIRIFDLGRKKASTDEFPLCVHLISLEKEQLSSEAIEAGRISCNKYISKTGGKDSFHMRVRVHPWHVLRINKMLSCAGADRLQTGMRGAFGKPMGTVARVNIGQIIFSIRTRDNMLANVVEALRRSSYKFPGRQKIVVSKKWGFTAYNREAYQKLKADGRLMNDGANVKVITNHGTLAQ 208          
BLAST of CX047179 vs. ExPASy Swiss-Prot
Match: RL10L_BOVIN (60S ribosomal protein L10-like OS=Bos taurus GN=RPL10L PE=2 SV=1)

HSP 1 Score: 301.982 bits (772), Expect = 2.643e-81
Identity = 145/206 (70.39%), Postives = 165/206 (80.10%), Query Frame = 1
Query:   52 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 669
            MGRRPARCYR  KNKPYPKSRFCRGVPD KIRI+D+G KK  VDEFP C H+VS E E +SSEALEAARI  NKYM K  GKD FH+RVR+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++    ++ R++PDG   K +   GPL
Sbjct:    1 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDKVAKKRLIPDGCGVKYVPNRGPL 206          
BLAST of CX047179 vs. ExPASy Swiss-Prot
Match: RL10L_MOUSE (60S ribosomal protein L10-like OS=Mus musculus GN=Rpl10l PE=2 SV=1)

HSP 1 Score: 301.212 bits (770), Expect = 4.509e-81
Identity = 145/206 (70.39%), Postives = 164/206 (79.61%), Query Frame = 1
Query:   52 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 669
            MGRRPARCYR  KNKPYPKSRFCRGVPD KIRI+D+G KK  VDEFP C H+VS E E +SSEALEAARI  NKYM K  GKD FH+RVR+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++    +  R++PDG   K +   GPL
Sbjct:    1 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDKVAAKRLIPDGCGVKYIPERGPL 206          
BLAST of CX047179 vs. ExPASy Swiss-Prot
Match: RL10_MACFA (60S ribosomal protein L10 OS=Macaca fascicularis GN=RPL10 PE=2 SV=1)

HSP 1 Score: 300.056 bits (767), Expect = 1.004e-80
Identity = 145/206 (70.39%), Postives = 164/206 (79.61%), Query Frame = 1
Query:   52 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 669
            MGRRPAR YR  KNKPYPKSRFCRGVPD KIRI+D+G KK  VDEFP C H+VS E E +SSEALEAARI  NKYM K  GKD FH+RVR+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++    +E R++PDG   K +   GPL
Sbjct:    1 MGRRPARRYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAEKRLIPDGCGVKYIPNRGPL 206          
BLAST of CX047179 vs. ExPASy Swiss-Prot
Match: RL10_BOMMA (60S ribosomal protein L10 OS=Bombyx mandarina GN=RpL10 PE=2 SV=1)

HSP 1 Score: 299.286 bits (765), Expect = 1.713e-80
Identity = 143/206 (69.42%), Postives = 163/206 (79.13%), Query Frame = 1
Query:   52 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 669
            MGRRPARCYR  KNKPYPKSRFCRGVPDPKIRI+D+G K+  VD+FP CVHLVS E E +SSEALEA RI CNKY+ K  GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQ ++SVR  D       EALRRAKFKFPGRQKI VS+KWGFTK+ R ++ + + E R+  DG   +    HGPL
Sbjct:    1 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPL 206          
BLAST of CX047179 vs. ExPASy Swiss-Prot
Match: RL10L_HUMAN (60S ribosomal protein L10-like OS=Homo sapiens GN=RPL10L PE=1 SV=3)

HSP 1 Score: 297.745 bits (761), Expect = 4.985e-80
Identity = 143/206 (69.42%), Postives = 164/206 (79.61%), Query Frame = 1
Query:   52 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 669
            MGRRPARCYR  KNKPYPKSRFCRGVPD KIRI+D+G KK  VDEFP   H+VS E E +SSEALEAARI  NKYM K  G+D FH+RVR+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++    ++  ++PDG   K +  HGPL
Sbjct:    1 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLGGHMVSDEYEQLSSEALEAARICANKYMVKSCGRDGFHMRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNEEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAKKCLIPDGCGVKYVPSHGPL 206          
BLAST of CX047179 vs. ExPASy Swiss-Prot
Match: RL10_CHICK (60S ribosomal protein L10 (Fragment) OS=Gallus gallus GN=RPL10 PE=2 SV=1)

HSP 1 Score: 293.123 bits (749), Expect = 1.228e-78
Identity = 139/200 (69.50%), Postives = 159/200 (79.50%), Query Frame = 1
Query:   70 RCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 669
            RCYR  KNKPYPKSRFCRGVPDPKIRI+D+G KK  VDEFP C H+VS E E +SSEALEAARI  NKYM K  GKD FH+RVR+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV +GQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+   +    ++ R++PDG   K +   GPL
Sbjct:    2 RCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHMGQVIMSIRTKAQNKEHVVEALRRAKFKFPGRQKIHISKKWGFTKFNADAFEEMVAQKRLIPDGCGVKYVPGRGPL 201          
The following BLAST results are available for this feature:
BLAST of CX047179 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RL10_HUMAN4.078e-8270.8760S ribosomal protein L10 OS=Homo sapiens GN=RPL10... [more]
RL10_CAEEL6.956e-8270.6760S ribosomal protein L10 OS=Caenorhabditis elegan... [more]
RL10_PONAB9.085e-8270.8760S ribosomal protein L10 OS=Pongo abelii GN=RPL10... [more]
RL10_DICDI1.550e-8167.3160S ribosomal protein L10 OS=Dictyostelium discoid... [more]
RL10L_BOVIN2.643e-8170.3960S ribosomal protein L10-like OS=Bos taurus GN=RP... [more]
RL10L_MOUSE4.509e-8170.3960S ribosomal protein L10-like OS=Mus musculus GN=... [more]
RL10_MACFA1.004e-8070.3960S ribosomal protein L10 OS=Macaca fascicularis G... [more]
RL10_BOMMA1.713e-8069.4260S ribosomal protein L10 OS=Bombyx mandarina GN=R... [more]
RL10L_HUMAN4.985e-8069.4260S ribosomal protein L10-like OS=Homo sapiens GN=... [more]
RL10_CHICK1.228e-7869.5060S ribosomal protein L10 (Fragment) OS=Gallus gal... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_12F04_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12F04-K7-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047179 ID=CX047179; Name=CX047179; organism=Citrus sinensis; type=EST; length=817bp
CGGAGCCGAGCAGAAAGAGAGAATAGCTGAGACCGAACACGAACGCTCGC
CATGGGAAGAAGACCGGCAAGGTGTTACCGCCAAATCAAGAACAAACCCT
ACCCAAAGTCCCGCTTTTGCCGCGGTGTCCCCGATCCCAAGATCAGAATC
TACGATGTCGGGATGAAGAAGAAAGGCGTCGACGAGTTCCCCTTCTGCGT
TCACCTCGTCAGTTGGGAGAAGGAGAACGTGTCGAGCGAGGCCTTGGAAG
CTGCCCGTATCGCTTGCAACAAGTACATGGCCAAGTACGCCGGCAAGGAT
GCTTTCCATTTGCGAGTGAGGGTGCACCCCTTCCATGTTCTGCGTATTAA
CAAGATGCTTTCGTGTGCTGGGGCTGATAGGCTCCAGACTGGAATGAGGG
GTGCTTTTGGAAAGCCCCAAGGAACCTGTGCTCGTGTTGCTATCGGGCAG
GTCTTGCTTTCTGTCCGTTGCAAGGATAGTAACAGCCACCATGCTCAGGA
GGCCCTTCGCCGTGCTAAGTTCAAGTTTCCTGGTCGTCAAAAGATTATTG
TCAGCAGGAAATGGGGATTTACCAAGTTCAGCCGTGCTGATTATCTGCGG
TGGAAGTCGGAGAACAGGATTGTCCCAGATGGTGTGAATGCCAAGCTTCT
CGGATGTCATGGTCCTTTGGCTCAACGTCAACCTGGAAGAGCTTTCCTGG
AAGCAACAACCTAAGATATTTACTGTCTCAAAATAGCAGAGCTGGGTCTA
CTGTCTAGTTTATTATTTTCCATTTCGTACCTTTTCTCAGTTGAACTGGA
TTTCTCAAGTTGAAGTG
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