CX047179

Overview
NameCX047179
Unique NameCX047179
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length817
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047179 vs. ExPASy Swiss-Prot
Match: RL10_NATPD (50S ribosomal protein L10e OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.291e-19
Identity = 56/170 (32.94%), Postives = 91/170 (53.53%), Query Frame = 1
Query:   52 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDA-FHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 558
            M  +PA  YR I    Y +  +  G+P  K+  Y +G  +   +++   + L+  E+  +   +LEA+R++ N+ M K  G+D  + + +R  P  V+R NK  + AGADR+  GMR AFGK  GT AR+  G+ + ++ C   ++  A++A RRA  K      I V R
Sbjct:    1 MSDKPASMYRDIDKPAYTRREYITGIPGSKVAQYKMGNFEADPEDYEVQISLIVDEEVQIRHGSLEASRLSANRRMLKELGEDGDYKMILRKFPHQVIRENKQATGAGADRVSDGMRQAFGKIVGTAARINKGERVFTIWCHPEDADAAKDAFRRAYNKISPPCTIKVER 170          
BLAST of CX047179 vs. ExPASy Swiss-Prot
Match: RL10_NANEQ (50S ribosomal protein L10e OS=Nanoarchaeum equitans GN=rpl10e PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.383e-13
Identity = 47/165 (28.48%), Postives = 84/165 (50.91%), Query Frame = 1
Query:   73 CYRQIKNKPYPK------SRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKML-SCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKD-SNSHHAQEALRRAKFKFPGRQK 543
            CYR+++  PY +        +  G     +R++ +G   +   E+ +   LV+ E   +   A+EA R+  NKY+    GK  +   +R +P H+ R   ++   AGADR+  GMR +FG+P+G   ++  G+ LLS+   D + +   +  L+ A+ K P R +
Sbjct:    9 CYRKLE-VPYTRVSRSKNKNYIPGAKPTMVRLFHMGELTRNPSEWQYEASLVAKENHQIRDNAIEAIRVMVNKYLESTLGKKRYLFIIRKYPHHIYREKPVVGGYAGADRISQGMRLSFGRPKGRAVQIYEGEKLLSIFFDDITKAKDIKYFLQVARSKLPWRYR 172          
The following BLAST results are available for this feature:
BLAST of CX047179 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RL10_NATPD1.291e-1932.9450S ribosomal protein L10e OS=Natronomonas pharaon... [more]
RL10_NANEQ1.383e-1328.4850S ribosomal protein L10e OS=Nanoarchaeum equitan... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_12F04_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12F04-K7-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047179 ID=CX047179; Name=CX047179; organism=Citrus sinensis; type=EST; length=817bp
CGGAGCCGAGCAGAAAGAGAGAATAGCTGAGACCGAACACGAACGCTCGC
CATGGGAAGAAGACCGGCAAGGTGTTACCGCCAAATCAAGAACAAACCCT
ACCCAAAGTCCCGCTTTTGCCGCGGTGTCCCCGATCCCAAGATCAGAATC
TACGATGTCGGGATGAAGAAGAAAGGCGTCGACGAGTTCCCCTTCTGCGT
TCACCTCGTCAGTTGGGAGAAGGAGAACGTGTCGAGCGAGGCCTTGGAAG
CTGCCCGTATCGCTTGCAACAAGTACATGGCCAAGTACGCCGGCAAGGAT
GCTTTCCATTTGCGAGTGAGGGTGCACCCCTTCCATGTTCTGCGTATTAA
CAAGATGCTTTCGTGTGCTGGGGCTGATAGGCTCCAGACTGGAATGAGGG
GTGCTTTTGGAAAGCCCCAAGGAACCTGTGCTCGTGTTGCTATCGGGCAG
GTCTTGCTTTCTGTCCGTTGCAAGGATAGTAACAGCCACCATGCTCAGGA
GGCCCTTCGCCGTGCTAAGTTCAAGTTTCCTGGTCGTCAAAAGATTATTG
TCAGCAGGAAATGGGGATTTACCAAGTTCAGCCGTGCTGATTATCTGCGG
TGGAAGTCGGAGAACAGGATTGTCCCAGATGGTGTGAATGCCAAGCTTCT
CGGATGTCATGGTCCTTTGGCTCAACGTCAACCTGGAAGAGCTTTCCTGG
AAGCAACAACCTAAGATATTTACTGTCTCAAAATAGCAGAGCTGGGTCTA
CTGTCTAGTTTATTATTTTCCATTTCGTACCTTTTCTCAGTTGAACTGGA
TTTCTCAAGTTGAAGTG
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