CX047178

Overview
NameCX047178
Unique NameCX047178
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length934
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047178 vs. ExPASy Swiss-Prot
Match: AMP1A_ARATH (Methionine aminopeptidase 1A OS=Arabidopsis thaliana GN=MAP1A PE=2 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 2.478e-65
Identity = 118/216 (54.63%), Postives = 146/216 (67.59%), Query Frame = -3
Query:  288 VKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHY-RNNDHGRMVLNQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILT 932
            + PG+TTDEID+ VH+  I  G YPSPL Y  FPKS CTSVNE ICHGIPD+R LEDGD +N+DVTV   G HGD + T+F G+VD+ +R LVK T +CL KAI++  PG+ +++IG+ +  HA      VVR + GHGIG +FH  P + HY RN   G M   QTFTIEPM+  G      W D WT VT DG  SAQFEHT+L+T  G E+LT
Sbjct:  168 IHPGVTTDEIDRVVHEATIAAGGYPSPLNYYFFPKSCCTSVNEVICHGIPDARKLEDGDIVNVDVTVCYKGCHGDLNETYFVGNVDEASRQLVKCTYECLEKAIAIVKPGVRFREIGEIVNRHATMSGLSVVRSYCGHGIGDLFHCAPNIPHYARNKAVGVMKAGQTFTIEPMINAGGWRDRTWPDGWTAVTADGKRSAQFEHTLLVTETGVEVLT 383          
BLAST of CX047178 vs. ExPASy Swiss-Prot
Match: AMPM1_MOUSE (Methionine aminopeptidase 1 OS=Mus musculus GN=Metap1 PE=2 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 2.098e-64
Identity = 117/217 (53.92%), Postives = 144/217 (66.36%), Query Frame = -3
Query:  285 VKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHY-RNNDHGRMVLNQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILTQ 932
            +K G+TT+EID AVH   I    YPSPL Y  FPKS CTSVNE ICHGIPD R L++GD +N+D+T+Y NGYHGD + TFF GDVD+ AR LV+ T +CL +AI    PG+ Y+++G  IQ HA    + VVR + GHGI ++FH  P V HY +N   G M     FTIEPM+  G      W D WT VT DG  SAQFEHT+L+T  G EILT+
Sbjct:  157 IKAGVTTEEIDHAVHLACIARNCYPSPLNYYNFPKSCCTSVNEVICHGIPDRRPLQEGDIVNVDITLYRNGYHGDLNETFFVGDVDEGARKLVQTTYECLMQAIDAVKPGVRYRELGNIIQKHAQANGFSVVRSYCGHGIHKLFHTAPNVPHYAKNKAVGVMKSGHVFTIEPMICEGGWQDETWPDGWTAVTRDGKRSAQFEHTLLVTDTGCEILTR 373          
BLAST of CX047178 vs. ExPASy Swiss-Prot
Match: AMPM1_XENTR (Methionine aminopeptidase 1 OS=Xenopus tropicalis GN=metap1 PE=2 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 3.579e-64
Identity = 117/217 (53.92%), Postives = 144/217 (66.36%), Query Frame = -3
Query:  285 VKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHY-RNNDHGRMVLNQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILTQ 932
            VK GITT+EID AVH   I    YPSPL Y  FPKS CTSVNE ICHGIPD R L+DGD +N+D+TVY +GYHGD + TF+ GDVD+ A+ LV+ T +CL +AI    PG+ Y+++G  IQ HA    + VVR + GHGI ++FH  P V HY +N   G M     FTIEPM+  G      W D WT +T DG  SAQFEHT+L+T  G EILT+
Sbjct:  157 VKSGITTEEIDHAVHLACISRNCYPSPLNYYNFPKSCCTSVNEVICHGIPDRRPLQDGDIVNVDITVYRDGYHGDLNETFYVGDVDEGAKRLVETTYECLMQAIDEVKPGVRYRELGNIIQKHAQANGFSVVRSYCGHGIHKLFHTAPNVPHYAKNKAVGVMKPGHVFTIEPMICEGGWQDETWPDGWTAITRDGKRSAQFEHTLLVTETGCEILTR 373          
BLAST of CX047178 vs. ExPASy Swiss-Prot
Match: AMPM1_DANRE (Methionine aminopeptidase 1 OS=Danio rerio GN=metap1 PE=2 SV=2)

HSP 1 Score: 244.973 bits (624), Expect = 4.674e-64
Identity = 118/217 (54.38%), Postives = 144/217 (66.36%), Query Frame = -3
Query:  285 VKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHY-RNNDHGRMVLNQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILTQ 932
            VKPG+TT+EID AVH        YPSPL Y  FPKS CTSVNE ICHGIPD R L++GD +NID+TVY NGYHGD + TFF G+VD+ A+ LV+ T +CL +AI    PG+ Y+++G  IQ HA    + VVR + GHGI ++FH  P V HY +N   G M     FTIEPM+  G      W D WT VT DG  SAQFEHT+L+T  G EILT+
Sbjct:  156 VKPGVTTEEIDHAVHLACTARNCYPSPLNYYNFPKSCCTSVNEVICHGIPDRRHLQEGDILNIDITVYHNGYHGDLNETFFVGEVDEGAKRLVQTTYECLMQAIDSVKPGIRYRELGNIIQKHAQANGFSVVRSYCGHGIHKLFHTAPNVPHYAKNKAVGVMKPGHVFTIEPMICEGGWQDETWPDGWTAVTRDGKRSAQFEHTLLVTETGCEILTR 372          
BLAST of CX047178 vs. ExPASy Swiss-Prot
Match: AMPM1_XENLA (Methionine aminopeptidase 1 OS=Xenopus laevis GN=metap1 PE=2 SV=2)

HSP 1 Score: 244.588 bits (623), Expect = 6.105e-64
Identity = 116/216 (53.70%), Postives = 143/216 (66.20%), Query Frame = -3
Query:  288 VKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHY-RNNDHGRMVLNQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILT 932
            VK GITT+EID AVH   I    YPSPL Y  FPKS CTSVNE ICHGIPD R L+DGD +N+D+TVY +GYHGD + TF+ GDVD+ A+ LV+ T +CL +AI    PG+ Y+++G  IQ HA    + +VR + GHGI ++FH  P V HY +N   G M     FTIEPM+  G      W D WT +T DG  SAQFEHT+L+T  G EILT
Sbjct:  157 VKSGITTEEIDHAVHLACISRNCYPSPLNYYNFPKSCCTSVNEVICHGIPDRRPLQDGDIVNVDITVYRDGYHGDLNETFYVGDVDEGAKRLVETTYECLMQAIDEVKPGVRYRELGNIIQKHAQANGFSIVRSYCGHGIHKLFHTAPNVPHYGKNKAVGVMKPGHVFTIEPMICEGGWQDETWPDGWTAITRDGKRSAQFEHTLLVTETGCEILT 372          
BLAST of CX047178 vs. ExPASy Swiss-Prot
Match: AMPM1_CHICK (Methionine aminopeptidase 1 OS=Gallus gallus GN=METAP1 PE=2 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 1.360e-63
Identity = 116/217 (53.46%), Postives = 144/217 (66.36%), Query Frame = -3
Query:  285 VKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHY-RNNDHGRMVLNQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILTQ 932
            VK G+TT+EID AVH   I    YPSPL Y  FPKS CTSVNE ICHGIPD R L++GD +N+D+TVY NGYHGD + TF+ G+VD+ A+ LV+ T +CL +AI    PG+ Y+++G  IQ HA    + VVR + GHGI ++FH  P V HY +N   G M     FTIEPM+  G      W D WT VT DG  SAQFEHT+L+T  G EILT+
Sbjct:  157 VKAGVTTEEIDHAVHLACIARNCYPSPLNYYNFPKSCCTSVNEVICHGIPDRRPLQEGDIVNVDITVYRNGYHGDLNETFYVGEVDEGAKRLVQTTYECLMQAIDAVKPGVRYRELGNIIQKHAQANGFSVVRSYCGHGIHKLFHTAPNVPHYAKNKAVGVMKPGHVFTIEPMICEGGWQDETWPDGWTAVTRDGKRSAQFEHTLLVTDTGCEILTR 373          
BLAST of CX047178 vs. ExPASy Swiss-Prot
Match: AMP1D_DANRE (Methionine aminopeptidase 1D, mitochondrial OS=Danio rerio GN=map1d PE=2 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 2.565e-62
Identity = 117/216 (54.17%), Postives = 144/216 (66.67%), Query Frame = -3
Query:  285 VKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYRNNDHGRMVLNQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILTQ 932
            +K G+TTDEID  VHQ  I +  YPSPL YGGFPKSVCTSVN  +CHGIPDSR L+DGD INIDVTVYL GYHGDTS TF  G V+D+ R LV V + C  +AI+ C PG     IG  I + A+   + V   F+GHGIG  FH  P + H+ N++  +M    +FTIEP+L  G+    +  D WT V+ D   SAQFEHT++IT DG EILT+
Sbjct:  118 LKVGMTTDEIDFIVHQEAIRHNGYPSPLHYGGFPKSVCTSVNNVVCHGIPDSRPLQDGDIINIDVTVYLEGYHGDTSETFLIGSVNDQGRKLVDVARQCRDQAIAACGPGQPLCVIGNIISNIANSNGFRVCPYFIGHGIGEYFHGHPEIWHHANDNDLKMEEGMSFTIEPILMEGTSGFRILSDKWTAVSVDDKRSAQFEHTVVITSDGVEILTK 333          
BLAST of CX047178 vs. ExPASy Swiss-Prot
Match: AMP1D_HUMAN (Methionine aminopeptidase 1D, mitochondrial OS=Homo sapiens GN=MAP1D PE=1 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 4.375e-62
Identity = 117/216 (54.17%), Postives = 146/216 (67.59%), Query Frame = -3
Query:  285 VKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYRNNDHGRMVLNQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILTQ 932
            +K  +TT+EID  VH+ II + AYPSPLGYGGFPKSVCTSVN  +CHGIPDSR L+DGD INIDVTVY NGYHGDTS TF  G+VD+  + LV+V + C  +AI+ C  G  +  IG TI     +  + V   FVGHGIG  FH  P + H+ N+    M     FTIEP++T GS    + +D WT+V+ D   SAQFEHT+LIT  GA+ILT+
Sbjct:  115 LKVDMTTEEIDALVHREIISHNAYPSPLGYGGFPKSVCTSVNNVLCHGIPDSRPLQDGDIINIDVTVYYNGYHGDTSETFLVGNVDECGKKLVEVARRCRDEAIAACRAGAPFSVIGNTISHITHQNGFQVCPHFVGHGIGSYFHGHPEIWHHANDSDLPMEEGMAFTIEPIITEGSPEFKVLEDAWTVVSLDNQRSAQFEHTVLITSRGAQILTK 330          
BLAST of CX047178 vs. ExPASy Swiss-Prot
Match: AMPM1_YEAST (Methionine aminopeptidase 1 OS=Saccharomyces cerevisiae GN=MAP1 PE=1 SV=2)

HSP 1 Score: 234.187 bits (596), Expect = 8.251e-61
Identity = 107/217 (49.31%), Postives = 144/217 (66.36%), Query Frame = -3
Query:  288 VKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGD-VDDEARNLVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHY-RNNDHGRMVLNQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILT 932
            V+PGITTDE+D+ VH   I  GAYPSPL Y  FPKS+CTSVNE ICHG+PD   L++GD +N+DV++Y  GYH D + T++ G+ +  EA N  + +++CL  AI +C PG  ++++G  I+ HA      VVR + GHG+G  FH  P + HY +N   G M     FTIEPM+  G+   + W D+WT  T+DG LSAQFEHT+L+T  G EILT
Sbjct:  156 VRPGITTDELDEIVHNETIKRGAYPSPLNYYNFPKSLCTSVNEVICHGVPDKTVLKEGDIVNLDVSLYYQGYHADLNETYYVGENISKEALNTTETSRECLKLAIKMCKPGTTFQELGDHIEKHATENKCSVVRTYCGHGVGEFFHCSPNIPHYAKNRTPGVMKPGMVFTIEPMINEGTWKDMTWPDDWTSTTQDGKLSAQFEHTLLVTEHGVEILT 372          
BLAST of CX047178 vs. ExPASy Swiss-Prot
Match: AMP1D_MOUSE (Methionine aminopeptidase 1D, mitochondrial OS=Mus musculus GN=Map1d PE=2 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 3.135e-60
Identity = 116/216 (53.70%), Postives = 143/216 (66.20%), Query Frame = -3
Query:  285 VKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYRNNDHGRMVLNQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILTQ 932
            +K  +TT+EID  VH  II + AYPSPLGYG FPKSVCTSVN  +CHGIPDSR L+DGD INIDVTVY NGYHGDTS TF  G+VD+  + LV+V + C  +AI+ C  G  +  IG TI     +    V   FVGHGIG  FH  P + H+ N++   M     FTIEP++T GS    + +D WT+V+ D   SAQFEHT+LIT  G EILT+
Sbjct:  115 LKVDMTTEEIDALVHWEIIRHDAYPSPLGYGRFPKSVCTSVNNVLCHGIPDSRPLQDGDIINIDVTVYYNGYHGDTSETFLVGNVDESGKKLVEVARRCRDEAIAACRAGAPFSVIGNTISRITHQNGLQVCPHFVGHGIGSYFHGHPEIWHHANDNDLPMEEGMAFTIEPIITEGSPEFKVLEDAWTVVSLDNQRSAQFEHTVLITPRGVEILTK 330          
The following BLAST results are available for this feature:
BLAST of CX047178 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
AMP1A_ARATH2.478e-6554.63Methionine aminopeptidase 1A OS=Arabidopsis thalia... [more]
AMPM1_MOUSE2.098e-6453.92Methionine aminopeptidase 1 OS=Mus musculus GN=Met... [more]
AMPM1_XENTR3.579e-6453.92Methionine aminopeptidase 1 OS=Xenopus tropicalis ... [more]
AMPM1_DANRE4.674e-6454.38Methionine aminopeptidase 1 OS=Danio rerio GN=meta... [more]
AMPM1_XENLA6.105e-6453.70Methionine aminopeptidase 1 OS=Xenopus laevis GN=m... [more]
AMPM1_CHICK1.360e-6353.46Methionine aminopeptidase 1 OS=Gallus gallus GN=ME... [more]
AMP1D_DANRE2.565e-6254.17Methionine aminopeptidase 1D, mitochondrial OS=Dan... [more]
AMP1D_HUMAN4.375e-6254.17Methionine aminopeptidase 1D, mitochondrial OS=Hom... [more]
AMPM1_YEAST8.251e-6149.31Methionine aminopeptidase 1 OS=Saccharomyces cerev... [more]
AMP1D_MOUSE3.135e-6053.70Methionine aminopeptidase 1D, mitochondrial OS=Mus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_12F03_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12F03-K5-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047178 ID=CX047178; Name=CX047178; organism=Citrus sinensis; type=EST; length=934bp
CTTTTTTTTGACAAACGATGCAAATACCATTTAAGAATTATTGATTCTCA
GTACAAGCAAAATTATATGTTCATTGTCTGTAAAATCACCAATCAAAGAT
TAAAAAGTAGCACTTACAGAAAAGATGAAAAAGAAACAATGATAAAAACA
AGAATGCAATGCCTCCACCAACAACAAAATTTTGATTAGGAAGAGGCAAT
CCAATGACATCCAATTGGTGTATATTCTCCGAATGGGCAGATCTGCAACT
ATTTAATGTAATGGTACGAATTCCATGTTTAACACTGCGTTAATATCTCA
GCACCGTCCCTGGTAATAAGAATAGTGTGCTCAAATTGTGCTGACAGGCT
CCCGTCTTCTGTAACAATTGTCCAGTTGTCATCCCACATAACAGGATTTA
TGCTACCTATTGTCAGCATCGGTTCTATGGTGAAAGTTTGATTCAACACC
ATGCGTCCATGATCATTGTTCCTATAGTGTAAAACAACAGGATCCGCATG
GAAAACACGTCCAATCCCATGGCCAACGAATTGTCGAACAACGCCATAAT
TATATCTATCTGCATGGTCCTGAATGGTTTTGCCAATTTTCTTGTACTCC
ATTCCCGGTGCACATACCGATATAGCTTTATGTAGACAATCTTTGGTTAC
CTTCACCAGATTTCTGGCTTCATCATCAACATCTCCACAAAAGAAAGTCG
CTGATGTATCACCATGATAACCATTTAGATAAACAGTCACATCAATATTT
ATAGTATCACCATCCTCAAGTGCACGGGAATCCGGTATTCCGTGGCAGAT
ACATTCATTCACTGATGTACAGACACTCTTTGGAAACCCACCATAGCCAA
GAGGTGAGGGATATGCTCCATTATCAATAATCATTTGATGAACTGCTTTG
TCAATTTCATCTGTTGTAATACCTGGCTTAACTA
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