CX047178

Overview
NameCX047178
Unique NameCX047178
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length934
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047178 vs. ExPASy Swiss-Prot
Match: AMPM1_SYNY3 (Putative methionine aminopeptidase A OS=Synechocystis sp. (strain PCC 6803) GN=slr0918 PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 8.538e-58
Identity = 112/217 (51.61%), Postives = 139/217 (64.06%), Query Frame = -3
Query:  288 VKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPD-SRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYRNNDHG-RMVLNQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILT 932
            V+PGITT E++    +    +GA  +PLGY GFPKS+CTS+NE ICHGIP   R L+ GD IN+DVT  ++GYHGD S TFF G     A  LVKVT++CL   I    PG +   IG  IQ HA+   + VVR FVGHGI ++FH  P + HY     G R+     FTIEPM+  G+   V+ DD WT +T+DG LSAQFEHTI +T DG EILT
Sbjct:   34 VQPGITTLELNDEAEKWTKAHGAISAPLGYNGFPKSICTSINEVICHGIPHRKRVLQAGDIINVDVTPIVDGYHGDCSRTFFVGTPSPVAEKLVKVTEECLRLGIEAVKPGGKIGDIGAAIQSHAEAQGFSVVRDFVGHGISKIFHTAPQIPHYGKAGKGKRLRPGMVFTIEPMINEGTWEAVLLDDGWTAITKDGKLSAQFEHTIAVTEDGVEILT 250          
BLAST of CX047178 vs. ExPASy Swiss-Prot
Match: AMPM_RICPR (Methionine aminopeptidase OS=Rickettsia prowazekii GN=map PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 5.534e-57
Identity = 104/217 (47.93%), Postives = 146/217 (67.28%), Query Frame = -3
Query:  288 VKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYRNNDHG-RMVLNQTFTIEPMLTIGSINPVMWD-DNWTIVTEDGSLSAQFEHTILITRDGAEILT 932
            VKP +TT+ ++   H  I  + A P+PL Y GFPKS+CTS+N  +CHGIP+ + L++GD +NIDVTV L+G++GDTS  ++ GDV  + + L++VT D + K I V  PG +   IG  IQ +A+++NY VVR + GHGIGRVFH  P +L+Y  N  G  +     FT+EPM+  G+ + ++   D WT+ T D SLSAQFEHTI +T+DG EI T
Sbjct:   32 VKPNVTTNSLNDLCHNFITSHNAIPAPLNYKGFPKSICTSINHVVCHGIPNDKPLKNGDIVNIDVTVILDGWYGDTSRMYYVGDVAIKPKRLIQVTYDAMMKGIEVVRPGAKLGDIGYAIQSYAEKHNYSVVRDYTGHGIGRVFHDKPSILNYGRNGTGLTLKEGMFFTVEPMINAGNYDTILSKLDGWTVTTRDKSLSAQFEHTIGVTKDGFEIFT 248          
BLAST of CX047178 vs. ExPASy Swiss-Prot
Match: AMPM1_SCHPO (Probable methionine aminopeptidase 1 OS=Schizosaccharomyces pombe GN=SPBC3E7.10 PE=1 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 3.966e-55
Identity = 107/222 (48.20%), Postives = 140/222 (63.06%), Query Frame = -3
Query:  288 VKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGD---VDDEARNLVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHAD---RYNYGVVRQFVGHGIGRVFHADPVVLHYRNND-HGRMVLNQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILT 932
            V+PG TTDE+D  VH   I+   +PS L Y  FPKSVCTSVNE ICHGIPD R LEDGD +NIDV++Y NG+HGD + T++ GD    + +   LV+ T+  L KAI+   PG+ +++ G  I+ H +        VVR + GHGI ++FH  P + HY +N   G      TFTIEPMLT+G    + W D+WT  T  G  SAQFEHT+L+T  G E+LT
Sbjct:  146 VRPGTTTDELDSIVHNACIERDCFPSTLNYYAFPKSVCTSVNEIICHGIPDQRPLEDGDIVNIDVSLYHNGFHGDLNETYYVGDKAKANPDLVCLVENTRIALDKAIAAVKPGVLFQEFGNIIEKHTNSITEKQISVVRTYCGHGINQLFHCSPSIPHYSHNKAPGIARPGMTFTIEPMLTLGPARDITWPDDWTSSTASGRCSAQFEHTLLVTETGCEVLT 367          
BLAST of CX047178 vs. ExPASy Swiss-Prot
Match: AMPM_BUCAP (Methionine aminopeptidase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=map PE=3 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 5.180e-55
Identity = 99/216 (45.83%), Postives = 143/216 (66.20%), Query Frame = -3
Query:  288 VKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPD-SRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYRNNDHGRMVLNQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILT 932
            +KP I+T+EI+   H  II   A  + LGY GFPKS+C SVN+ +CHGIP+ ++ L+ GD +NIDVT+    YH DTS  F  G  +  ++ L K+ ++ L+K++++  PG+   KIG+ IQ++ +  N+ VV+++ GHGIGR FH +P VLHY+N  H  +     FTIEPM+  GS       D WT+ T+D SLSAQ+EHT+LIT +G +ILT
Sbjct:   32 IKPNISTEEINNICHNFIIKKKAVSACLGYHGFPKSICISVNDVVCHGIPNKNQILKSGDIVNIDVTIIKKNYHADTSKMFLVGQTNILSQRLCKIAQESLYKSLNILKPGIPLYKIGEVIQNYVENNNFSVVKEYCGHGIGRAFHEEPYVLHYKNKSHVILEKGMIFTIEPMINAGSHEVKCMKDGWTVKTKDHSLSAQYEHTVLITENGCDILT 247          
BLAST of CX047178 vs. ExPASy Swiss-Prot
Match: AMPM_SALTY (Methionine aminopeptidase OS=Salmonella typhimurium GN=map PE=1 SV=2)

HSP 1 Score: 203.756 bits (517), Expect = 1.194e-51
Identity = 105/219 (47.95%), Postives = 143/219 (65.30%), Query Frame = -3
Query:  288 VKPGITTDEIDKAVHQMII-DNGAYPSPLGYGGFPKSVCTSVNECICHGIPD-SRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYRNNDHGRMVL--NQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILT 932
            +KPG+TT E+D+  +  I+ +  A  + LGY G+PKSVC S+NE +CHGIPD ++ L+DGD +NIDVTV  + +HGDTS  F  G        L +VT++ L+  I +  PG+  + IG  IQ +A+   + VVR++ GHGIGR FH +P VLHY + D G +VL    TFTIEPML  G        D WT+ T+D SLSAQ+EHTI++T +G EILT
Sbjct:   32 IKPGVTTGELDRICNDYIVNEQHAISACLGYHGYPKSVCISINEVVCHGIPDDAKHLKDGDIVNIDVTVIKDEFHGDTSKMFIVGKPTILGERLCRVTQESLYLGIKMVKPGIRLRTIGAAIQKYAEGEGFSVVREYCGHGIGRGFHEEPQVLHY-DADDGGVVLQPGMTFTIEPMLNAGDYRIRTMKDGWTVKTKDRSLSAQYEHTIVVTENGCEILT 249          
BLAST of CX047178 vs. ExPASy Swiss-Prot
Match: AMPM_SALTI (Methionine aminopeptidase OS=Salmonella typhi GN=map PE=3 SV=2)

HSP 1 Score: 203.756 bits (517), Expect = 1.194e-51
Identity = 105/219 (47.95%), Postives = 143/219 (65.30%), Query Frame = -3
Query:  288 VKPGITTDEIDKAVHQMII-DNGAYPSPLGYGGFPKSVCTSVNECICHGIPD-SRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYRNNDHGRMVL--NQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILT 932
            +KPG+TT E+D+  +  I+ +  A  + LGY G+PKSVC S+NE +CHGIPD ++ L+DGD +NIDVTV  + +HGDTS  F  G        L +VT++ L+  I +  PG+  + IG  IQ +A+   + VVR++ GHGIGR FH +P VLHY + D G +VL    TFTIEPML  G        D WT+ T+D SLSAQ+EHTI++T +G EILT
Sbjct:   32 IKPGVTTGELDRICNDYIVNEQHAISACLGYHGYPKSVCISINEVVCHGIPDDAKHLKDGDIVNIDVTVIKDEFHGDTSKMFIVGKPTILGERLCRVTQESLYLGIKMVKPGIRLRTIGAAIQKYAEGEGFSVVREYCGHGIGRGFHEEPQVLHY-DADDGGVVLQPGMTFTIEPMLNAGDYRIRTMKDGWTVKTKDRSLSAQYEHTIVVTENGCEILT 249          
BLAST of CX047178 vs. ExPASy Swiss-Prot
Match: AMPM_SHIFL (Methionine aminopeptidase OS=Shigella flexneri GN=map PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.941e-50
Identity = 99/218 (45.41%), Postives = 142/218 (65.14%), Query Frame = -3
Query:  288 VKPGITTDEIDKAVHQMII-DNGAYPSPLGYGGFPKSVCTSVNECICHGIPD-SRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYRNNDHGRMVL-NQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILT 932
            VKPG++T E+D+  +  I+ +  A  + LGY G+PKSVC S+NE +CHGIPD ++ L+DGD +NIDVTV  +G+HGDTS  F  G        L ++T++ L+ A+ +  PG+  ++IG  IQ   +   + VVR++ GHGIGR FH +P VLHY + +   ++    TFTIEPM+  G        D WT+ T+D SLSAQ+EHTI++T +G EILT
Sbjct:   32 VKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQVLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEILT 249          
BLAST of CX047178 vs. ExPASy Swiss-Prot
Match: AMPM_ECOLI (Methionine aminopeptidase OS=Escherichia coli (strain K12) GN=map PE=1 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.941e-50
Identity = 99/218 (45.41%), Postives = 142/218 (65.14%), Query Frame = -3
Query:  288 VKPGITTDEIDKAVHQMII-DNGAYPSPLGYGGFPKSVCTSVNECICHGIPD-SRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYRNNDHGRMVL-NQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILT 932
            VKPG++T E+D+  +  I+ +  A  + LGY G+PKSVC S+NE +CHGIPD ++ L+DGD +NIDVTV  +G+HGDTS  F  G        L ++T++ L+ A+ +  PG+  ++IG  IQ   +   + VVR++ GHGIGR FH +P VLHY + +   ++    TFTIEPM+  G        D WT+ T+D SLSAQ+EHTI++T +G EILT
Sbjct:   32 VKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQVLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEILT 249          
BLAST of CX047178 vs. ExPASy Swiss-Prot
Match: AMPM_ECOL6 (Methionine aminopeptidase OS=Escherichia coli O6 GN=map PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.941e-50
Identity = 99/218 (45.41%), Postives = 142/218 (65.14%), Query Frame = -3
Query:  288 VKPGITTDEIDKAVHQMII-DNGAYPSPLGYGGFPKSVCTSVNECICHGIPD-SRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYRNNDHGRMVL-NQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILT 932
            VKPG++T E+D+  +  I+ +  A  + LGY G+PKSVC S+NE +CHGIPD ++ L+DGD +NIDVTV  +G+HGDTS  F  G        L ++T++ L+ A+ +  PG+  ++IG  IQ   +   + VVR++ GHGIGR FH +P VLHY + +   ++    TFTIEPM+  G        D WT+ T+D SLSAQ+EHTI++T +G EILT
Sbjct:   32 VKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQVLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEILT 249          
BLAST of CX047178 vs. ExPASy Swiss-Prot
Match: AMPM_ECO57 (Methionine aminopeptidase OS=Escherichia coli O157:H7 GN=map PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.941e-50
Identity = 99/218 (45.41%), Postives = 142/218 (65.14%), Query Frame = -3
Query:  288 VKPGITTDEIDKAVHQMII-DNGAYPSPLGYGGFPKSVCTSVNECICHGIPD-SRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYRNNDHGRMVL-NQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILT 932
            VKPG++T E+D+  +  I+ +  A  + LGY G+PKSVC S+NE +CHGIPD ++ L+DGD +NIDVTV  +G+HGDTS  F  G        L ++T++ L+ A+ +  PG+  ++IG  IQ   +   + VVR++ GHGIGR FH +P VLHY + +   ++    TFTIEPM+  G        D WT+ T+D SLSAQ+EHTI++T +G EILT
Sbjct:   32 VKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQVLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEILT 249          
The following BLAST results are available for this feature:
BLAST of CX047178 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
AMPM1_SYNY38.538e-5851.61Putative methionine aminopeptidase A OS=Synechocys... [more]
AMPM_RICPR5.534e-5747.93Methionine aminopeptidase OS=Rickettsia prowazekii... [more]
AMPM1_SCHPO3.966e-5548.20Probable methionine aminopeptidase 1 OS=Schizosacc... [more]
AMPM_BUCAP5.180e-5545.83Methionine aminopeptidase OS=Buchnera aphidicola s... [more]
AMPM_SALTY1.194e-5147.95Methionine aminopeptidase OS=Salmonella typhimuriu... [more]
AMPM_SALTI1.194e-5147.95Methionine aminopeptidase OS=Salmonella typhi GN=m... [more]
AMPM_SHIFL2.941e-5045.41Methionine aminopeptidase OS=Shigella flexneri GN=... [more]
AMPM_ECOLI2.941e-5045.41Methionine aminopeptidase OS=Escherichia coli (str... [more]
AMPM_ECOL62.941e-5045.41Methionine aminopeptidase OS=Escherichia coli O6 G... [more]
AMPM_ECO572.941e-5045.41Methionine aminopeptidase OS=Escherichia coli O157... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_12F03_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12F03-K5-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047178 ID=CX047178; Name=CX047178; organism=Citrus sinensis; type=EST; length=934bp
CTTTTTTTTGACAAACGATGCAAATACCATTTAAGAATTATTGATTCTCA
GTACAAGCAAAATTATATGTTCATTGTCTGTAAAATCACCAATCAAAGAT
TAAAAAGTAGCACTTACAGAAAAGATGAAAAAGAAACAATGATAAAAACA
AGAATGCAATGCCTCCACCAACAACAAAATTTTGATTAGGAAGAGGCAAT
CCAATGACATCCAATTGGTGTATATTCTCCGAATGGGCAGATCTGCAACT
ATTTAATGTAATGGTACGAATTCCATGTTTAACACTGCGTTAATATCTCA
GCACCGTCCCTGGTAATAAGAATAGTGTGCTCAAATTGTGCTGACAGGCT
CCCGTCTTCTGTAACAATTGTCCAGTTGTCATCCCACATAACAGGATTTA
TGCTACCTATTGTCAGCATCGGTTCTATGGTGAAAGTTTGATTCAACACC
ATGCGTCCATGATCATTGTTCCTATAGTGTAAAACAACAGGATCCGCATG
GAAAACACGTCCAATCCCATGGCCAACGAATTGTCGAACAACGCCATAAT
TATATCTATCTGCATGGTCCTGAATGGTTTTGCCAATTTTCTTGTACTCC
ATTCCCGGTGCACATACCGATATAGCTTTATGTAGACAATCTTTGGTTAC
CTTCACCAGATTTCTGGCTTCATCATCAACATCTCCACAAAAGAAAGTCG
CTGATGTATCACCATGATAACCATTTAGATAAACAGTCACATCAATATTT
ATAGTATCACCATCCTCAAGTGCACGGGAATCCGGTATTCCGTGGCAGAT
ACATTCATTCACTGATGTACAGACACTCTTTGGAAACCCACCATAGCCAA
GAGGTGAGGGATATGCTCCATTATCAATAATCATTTGATGAACTGCTTTG
TCAATTTCATCTGTTGTAATACCTGGCTTAACTA
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