CX047178

Overview
NameCX047178
Unique NameCX047178
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length934
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047178 vs. ExPASy Swiss-Prot
Match: AMPM_BUCBP (Methionine aminopeptidase OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=map PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 5.547e-49
Identity = 95/219 (43.38%), Postives = 137/219 (62.56%), Query Frame = -3
Query:  288 VKPGITTDEIDKAVHQMII-DNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRA-LEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYRNNDHGRMVL--NQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILT 932
            + PGITT+E++   H  I     A P+ LGY GFPKS+CTS+N+ +CHGIP+  + L++GD INIDV +  + Y+ D S  FF G   +  + L  V K  L+ A+    PG+  +K+GK IQ++  + N+ +V+++ GHGIGR FH  P +LH+        +L    TFT+EPM+  GS      +D WT+ T+D SLSAQ+EHTIL+  +G EILT
Sbjct:   33 IVPGITTEELNNICHNYITYKQHAKPACLGYQGFPKSICTSINDIVCHGIPNKNSILKNGDIINIDVAILKDKYYSDASKMFFVGKPTELGKKLCYVAKKSLYLALYTIRPGINLQKLGKVIQNYVKKQNFSIVKEYCGHGIGRSFHEPPQILHHNYYKSNTTILQSGMTFTVEPMINSGSCEVQCTNDGWTVKTKDKSLSAQYEHTILVNEEGCEILT 251          
BLAST of CX047178 vs. ExPASy Swiss-Prot
Match: AMPM1_BACSU (Methionine aminopeptidase 1 OS=Bacillus subtilis GN=map PE=1 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 1.236e-48
Identity = 96/217 (44.24%), Postives = 133/217 (61.29%), Query Frame = -3
Query:  285 VKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYRNNDHG-RMVLNQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILTQ 932
            +KPGI+T E+D+   + I   GA PS  GY GF  S+C SVNE + HGIP SR L+DGD I+ID+   LNGYHGD++ T+  G++ D+ + L++VT++ L+K +    PG     I   IQ + +   + VVR++VGHG+G+  H DP + HY   + G R+       IEPM+  GS       DNWT+VT DG   A FEHTI IT  G +ILT+
Sbjct:   31 IKPGISTKELDQIAERFIKKQGAIPSFKGYNGFRGSICVSVNEELVHGIPGSRVLKDGDIISIDIGAKLNGYHGDSAWTYPVGNISDDDKKLLEVTEESLYKGLQEAKPGERLSNISHAIQTYVENEQFSVVREYVGHGVGQDLHEDPQIPHYGPPNKGPRLKPGMVLAIEPMVNAGSRYVKTLADNWTVVTVDGKKCAHFEHTIAITETGFDILTR 247          
BLAST of CX047178 vs. ExPASy Swiss-Prot
Match: AMPM_CLOAB (Methionine aminopeptidase OS=Clostridium acetobutylicum GN=map PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.614e-48
Identity = 94/218 (43.12%), Postives = 133/218 (61.01%), Query Frame = -3
Query:  282 KPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDS-RALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYRNNDHG-RMVLNQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILTQC 929
            KPG+TT ++D+     I    A PS  GYGGFP S+CTS+NE + HGIP   R L +GD I++D    LNGY GD + TF  G++ +EA  L+KVTK+   K +     G     I  +IQ++ + + YGVVR +VGHGIG+  H DP V +Y     G ++V      IEPM+ +G+       ++WT+VT+DGSL+A +E+T+ I  +G EILT C
Sbjct:   32 KPGVTTADLDRLAEDFIKKYNAIPSFKGYGGFPASICTSINEEVIHGIPSKHRVLHEGDIISVDCGAILNGYQGDAARTFAIGEISEEAAKLIKVTKESFFKGVEKAVIGNRLTDISHSIQEYVESFGYGVVRDYVGHGIGKEMHEDPEVPNYGRPGRGPKLVHGMVLAIEPMVDVGTYMVKTQSNDWTVVTQDGSLAAHYENTVAILDNGPEILTLC 249          
BLAST of CX047178 vs. ExPASy Swiss-Prot
Match: AMPM_BUCAI (Methionine aminopeptidase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=map PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 6.133e-48
Identity = 90/218 (41.28%), Postives = 143/218 (65.60%), Query Frame = -3
Query:  288 VKPGITTDEIDKAVHQMII-DNGAYPSPLGYGGFPKSVCTSVNECICHGIPD-SRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYRNNDHGRMV-LNQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILT 932
            ++P I+T++I++  H  I+    A  + LGY GFPKS+C S+N+ +CHGIP  ++  ++GD +NID+ +  +GYHGDTS  F+ G     ++ L +V ++ L+ ++ +  PG+   KIG+ IQ++ +  N+ VV+++ GHGIGR FH +P VLHY+N  +  ++     FTIEPM+  G+       D WT+ T+D SLSAQ+EHT+L+T  G +ILT
Sbjct:   32 LQPKISTEDINQICHDYIVYKKKAISACLGYHGFPKSICISINDVVCHGIPSKNQVFKEGDIVNIDIAIIKDGYHGDTSKMFYIGKTSILSKRLCQVARESLYLSLKLVKPGIPLYKIGEIIQNYVESNNFSVVKEYCGHGIGRNFHEEPHVLHYKNKKNNIILKKGMIFTIEPMINSGNPEVKCMKDGWTVKTKDRSLSAQYEHTVLVTEYGCDILT 249          
BLAST of CX047178 vs. ExPASy Swiss-Prot
Match: AMPM2_SYNY3 (Putative methionine aminopeptidase B OS=Synechocystis sp. (strain PCC 6803) GN=slr0786 PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 2.331e-47
Identity = 97/222 (43.69%), Postives = 137/222 (61.71%), Query Frame = -3
Query:  288 VKPGITTDEIDKAVHQMIIDNGAYPSPLGYG--GFPK---SVCTSVNECICHGIPDSRA-LEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYRNNDHG-RMVLNQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILT 932
            V+PG++T  ++    + + D+GA  + LGY   G+P    ++CTS+NE +CHGIP+ +  L+DGD INIDVT+ L GYHGDTS TF  G V   AR LV+ T++ + + I+   PG     IG  IQ +A+   + VVR  VGHGIGR  H +  + HY     G ++     FT+EPML  G+       D WT++T+D  LSAQFEHT+++T +G EILT
Sbjct:   51 VQPGVSTQALNDEATRWMEDHGAISATLGYAPPGYPPFTGAICTSINEVVCHGIPNPKQILKDGDIINIDVTLRLAGYHGDTSRTFLVGSVSATARKLVEATQESMMRGIAEIKPGARIGDIGAAIQAYAEASGFSVVRDMVGHGIGRQMHTELQIPHYGKRGSGLKLRPGMVFTVEPMLNEGTYELTFLADGWTVITKDKKLSAQFEHTVVVTEEGVEILT 272          
BLAST of CX047178 vs. ExPASy Swiss-Prot
Match: AMPM_BACHD (Methionine aminopeptidase OS=Bacillus halodurans GN=map PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 1.157e-46
Identity = 93/217 (42.86%), Postives = 130/217 (59.91%), Query Frame = -3
Query:  285 VKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYRNNDHG-RMVLNQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILTQ 932
            ++PGITT ++D+     I  +GA PS  GY GF  S+C SVNE + HGIP +R L++GD I++D+    NGYHGD++ T+  G++ DE ++L+ VT+  L+K +     G     I   IQ +A+   Y +VR++VGHG+G+  H DP + HY     G R+       IEPM+  GS       DNWT+VT DG   A FEHTI IT  G EILT+
Sbjct:   31 IQPGITTKKLDEIAETFIRSHGATPSFKGYNGFTGSICASVNEELVHGIPGNRVLKEGDIISVDIGAKYNGYHGDSAWTYAVGNISDEDQDLLDVTETSLYKGLEQAKAGARLSDISHAIQSYAEPRGYAIVREYVGHGVGQNLHEDPQIPHYGPPGKGPRLKPGMVLAIEPMVNAGSRYVRTLSDNWTVVTVDGKKCAHFEHTIAITETGYEILTK 247          
BLAST of CX047178 vs. ExPASy Swiss-Prot
Match: AMPM_HAEIN (Methionine aminopeptidase OS=Haemophilus influenzae GN=map PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.670e-45
Identity = 88/219 (40.18%), Postives = 135/219 (61.64%), Query Frame = -3
Query:  288 VKPGITTDEIDKAVHQ-MIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIP-DSRALEDGDTINIDVTVYLNGYHGDTSATFFCG-DVDDEARNLVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYRNNDHGRMVL-NQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILT 932
            VK G+TT E+D+  H+ M+ +    P+ L Y GFPK+ C S+NE +CHGIP D + L++GD +NIDVTV  +GY GD S  +  G + +  ++ LV+  ++ L+  I    P +   +IGK +Q + +   + VVR++ GHG+G  FH +P VLHY  +D G ++     FTIEPM+  G     +  D WT+ T+D S SAQ+EH +++T  G E++T
Sbjct:   32 VKAGVTTGELDRICHEYMVNEQKVIPACLNYHGFPKATCISINEVVCHGIPSDDKVLKNGDIVNIDVTVIKDGYFGDNSKMYIVGGETNIRSKKLVEAAQEALYVGIRTVKPDIRLNEIGKAVQKYTESQTFSVVREYCGHGVGTEFHCEPQVLHYYADDGGVILKPGMVFTIEPMINAGKKEVRVMGDGWTVKTKDRSHSAQYEHQLIVTETGCEVMT 250          
BLAST of CX047178 vs. ExPASy Swiss-Prot
Match: AMPM_CLOPE (Methionine aminopeptidase OS=Clostridium perfringens GN=map PE=3 SV=2)

HSP 1 Score: 181.03 bits (458), Expect = 8.289e-45
Identity = 91/216 (42.13%), Postives = 126/216 (58.33%), Query Frame = -3
Query:  288 VKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYRNNDHG-RMVLNQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILT 932
            V+PGITT E+D+   + I  +GA PS  G  GFP S+C SVN  + HG P S  L+DGD ++ID  V LNG+H D + TF  G++ +EA  L+++T++   K I           I   IQ + +   + VVR FVGHGIGR  H DP V ++     G +++      IEPM+ +GS      DD WT+VT DG LSA +E+T+ I  +G EILT
Sbjct:   31 VRPGITTTELDRIAEEFITKHGATPSFKGLYGFPASLCISVNNQVIHGFPGSYELKDGDIVSIDCGVCLNGFHSDAARTFGVGNISEEAEKLIRITEESFFKGIEKAYVDNRLTDISNEIQQYVEANGFSVVRDFVGHGIGRKVHEDPEVPNFGRPGRGPKLMAGMVLAIEPMVNMGSYRVKTLDDGWTVVTADGKLSAHYENTVAILPNGPEILT 246          
BLAST of CX047178 vs. ExPASy Swiss-Prot
Match: AMPM_CHLPN (Methionine aminopeptidase OS=Chlamydia pneumoniae GN=map PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 2.412e-44
Identity = 92/215 (42.79%), Postives = 131/215 (60.93%), Query Frame = -3
Query:  288 GITTDEIDKAVHQMIIDNGAYPSPLGYGG--FPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYRNNDHGRMVLNQTFTIEPMLTIGSINPVMWDDN-WTIVTEDGSLSAQFEHTILITRDGAEILT 923
            G+TT+E+D+   ++     A  +P  YG   FPK++CTS+NE ICHGIP+   L+DGD +NIDV+  ++GY+GD S     G+V +  + + +   +CL+ +I++  PG+   +IG+ I+  AD Y + VV QFVGHG+G  FH +P V HYRN     +     FTIEPM+ +G    V+   N W   T D   SAQ+EHTI IT  G EILT
Sbjct:   73 GVTTNELDELSQELHKKYDAIAAPFHYGSPPFPKTICTSLNEVICHGIPNDIPLKDGDIMNIDVSCIVDGYYGDCSRMVMIGEVPEIKKKICQAALECLNDSIAILKPGIPLCEIGEAIEARADTYGFSVVDQFVGHGVGIEFHENPYVPHYRNRSMIPLAPGMIFTIEPMINVGKKEGVVDPKNQWEARTCDNQPSAQWEHTIAITETGYEILT 287          
BLAST of CX047178 vs. ExPASy Swiss-Prot
Match: AMPM_CHLTR (Methionine aminopeptidase OS=Chlamydia trachomatis GN=map PE=1 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.197e-43
Identity = 91/220 (41.36%), Postives = 138/220 (62.73%), Query Frame = -3
Query:  288 KPGITTDEIDKAVHQMIIDNGAYPSPLGYGG--FPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYRNNDHGRMVLNQTFTIEPMLTIGS----INPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILT 929
            K G+TT+E+D    ++   + A P+PL YG   FPK++CTS+NE ICHGIP+   L++GD +NIDV+  ++G++GD S     G+V +  R + + + + L+ AIS+  P +   +IG+ I++ A +Y + VV QFVGHG+G  FH +P V H+RN+    +     FTIEPM+ +G     I+P+   ++W   T D   SAQ+EH ILIT  G E+LT
Sbjct:   71 KEGVTTNELDLLSRELHKRHNAIPAPLNYGHPPFPKTICTSLNEVICHGIPNDIPLQNGDIMNIDVSCIVDGFYGDCSRMVMIGEVSEIKRKVCEASLEALNAAISILEPNLPLYEIGEVIENCAAKYGFSVVDQFVGHGVGVKFHENPFVAHHRNSCKIPLAPGMIFTIEPMINVGKKEGFIDPI---NHWEARTCDHQPSAQWEHAILITDSGCEVLT 287          
The following BLAST results are available for this feature:
BLAST of CX047178 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
AMPM_BUCBP5.547e-4943.38Methionine aminopeptidase OS=Buchnera aphidicola s... [more]
AMPM1_BACSU1.236e-4844.24Methionine aminopeptidase 1 OS=Bacillus subtilis G... [more]
AMPM_CLOAB1.614e-4843.12Methionine aminopeptidase OS=Clostridium acetobuty... [more]
AMPM_BUCAI6.133e-4841.28Methionine aminopeptidase OS=Buchnera aphidicola s... [more]
AMPM2_SYNY32.331e-4743.69Putative methionine aminopeptidase B OS=Synechocys... [more]
AMPM_BACHD1.157e-4642.86Methionine aminopeptidase OS=Bacillus halodurans G... [more]
AMPM_HAEIN1.670e-4540.18Methionine aminopeptidase OS=Haemophilus influenza... [more]
AMPM_CLOPE8.289e-4542.13Methionine aminopeptidase OS=Clostridium perfringe... [more]
AMPM_CHLPN2.412e-4442.79Methionine aminopeptidase OS=Chlamydia pneumoniae ... [more]
AMPM_CHLTR1.197e-4341.36Methionine aminopeptidase OS=Chlamydia trachomatis... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS09_12F03_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12F03-K5-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047178 ID=CX047178; Name=CX047178; organism=Citrus sinensis; type=EST; length=934bp
CTTTTTTTTGACAAACGATGCAAATACCATTTAAGAATTATTGATTCTCA
GTACAAGCAAAATTATATGTTCATTGTCTGTAAAATCACCAATCAAAGAT
TAAAAAGTAGCACTTACAGAAAAGATGAAAAAGAAACAATGATAAAAACA
AGAATGCAATGCCTCCACCAACAACAAAATTTTGATTAGGAAGAGGCAAT
CCAATGACATCCAATTGGTGTATATTCTCCGAATGGGCAGATCTGCAACT
ATTTAATGTAATGGTACGAATTCCATGTTTAACACTGCGTTAATATCTCA
GCACCGTCCCTGGTAATAAGAATAGTGTGCTCAAATTGTGCTGACAGGCT
CCCGTCTTCTGTAACAATTGTCCAGTTGTCATCCCACATAACAGGATTTA
TGCTACCTATTGTCAGCATCGGTTCTATGGTGAAAGTTTGATTCAACACC
ATGCGTCCATGATCATTGTTCCTATAGTGTAAAACAACAGGATCCGCATG
GAAAACACGTCCAATCCCATGGCCAACGAATTGTCGAACAACGCCATAAT
TATATCTATCTGCATGGTCCTGAATGGTTTTGCCAATTTTCTTGTACTCC
ATTCCCGGTGCACATACCGATATAGCTTTATGTAGACAATCTTTGGTTAC
CTTCACCAGATTTCTGGCTTCATCATCAACATCTCCACAAAAGAAAGTCG
CTGATGTATCACCATGATAACCATTTAGATAAACAGTCACATCAATATTT
ATAGTATCACCATCCTCAAGTGCACGGGAATCCGGTATTCCGTGGCAGAT
ACATTCATTCACTGATGTACAGACACTCTTTGGAAACCCACCATAGCCAA
GAGGTGAGGGATATGCTCCATTATCAATAATCATTTGATGAACTGCTTTG
TCAATTTCATCTGTTGTAATACCTGGCTTAACTA
back to top