CX047178

Overview
NameCX047178
Unique NameCX047178
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length934
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047178 vs. ExPASy Swiss-Prot
Match: AMPM_CHLMU (Methionine aminopeptidase OS=Chlamydia muridarum GN=map PE=3 SV=2)

HSP 1 Score: 177.178 bits (448), Expect = 1.197e-43
Identity = 92/220 (41.82%), Postives = 138/220 (62.73%), Query Frame = -3
Query:  288 KPGITTDEIDKAVHQMIIDNGAYPSPLGYGG--FPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYRNNDHGRMVLNQTFTIEPMLTIGS----INPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILT 929
            K G+TT+E+D+    +     A P+PL YG   FPK++CTS+NE ICHGIP+   L++GD +NIDV+  ++G++GD S     G+V +  + + + + + L+ AI++  P +   +IG+ I++ A RY + VV QFVGHG+G  FH +P V H+RN+    +    TFTIEPM+ +G     I+P    ++W   T D   SAQ+EHT+LIT  G EILT
Sbjct:   71 KEGVTTNELDQLSCNLHKQYNAIPAPLNYGQPPFPKTICTSLNEVICHGIPNDTPLQNGDIMNIDVSCIVDGFYGDCSRMVMIGEVPEIKKKVCEASLEALNAAIAILEPNLPLYEIGEVIENCAARYGFSVVDQFVGHGVGVRFHENPYVAHHRNSCKIPLAPGMTFTIEPMINVGKKEGFIDPT---NHWEARTCDHQPSAQWEHTVLITDSGYEILT 287          
BLAST of CX047178 vs. ExPASy Swiss-Prot
Match: AMPM_MYCCT (Methionine aminopeptidase OS=Mycoplasma capricolum subsp. capricolum (strain California kid / ATCC 27343 / NCTC 10154) GN=map PE=3 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 6.568e-42
Identity = 83/218 (38.07%), Postives = 130/218 (59.63%), Query Frame = -3
Query:  285 VKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARN-LVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYRNNDHG-RMVLNQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILTQ 932
            +KPG+   ++DKA  + I  NG   +   Y GFPK++C S+N+ + HGIP  R L DGD ++ID       +H D++ T  CG   ++  + L++VT++ L  AI+   PG+    IG  IQ++ + +++ V R + GHGIG   H DP + +Y   + G R+       IEPM+ +G+    + DD WT+ + D S++A FEHTILIT+DG E+LT+
Sbjct:   31 IKPGVNCLDLDKAFEEFIKQNGCESNFKNYQGFPKTICISINDQLIHGIPRDRVLLDGDVVSIDAGCMYEKWHADSAFTMVCGIAKNKKNDILIRVTEEALELAIAELKPGIRVGTIGSIIQNYVESFDFSVPRDYTGHGIGLALHEDPYIPNYGIPNTGIRLQEGMVICIEPMVQMGTYKTKIADDKWTVYSADHSITAHFEHTILITKDGCEVLTK 248          
BLAST of CX047178 vs. ExPASy Swiss-Prot
Match: AMPM3_SYNY3 (Putative methionine aminopeptidase C OS=Synechocystis sp. (strain PCC 6803) GN=sll0555 PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.618e-40
Identity = 87/218 (39.91%), Postives = 120/218 (55.05%), Query Frame = -3
Query:  288 VKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRA-LEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYRNNDHGRMVL--NQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILT 932
            V+PG+TT ++D+   + I   GA PS  GY GFP S+C  VN  + HGIP  R  +  GD + +D   Y  GYHGD+  T   G V  +A+ L++V +  L+  I    PG     I   I+D+     Y +V +F GHG+G+  H DP V + R  D   + L    T  IEP++  GS       D WT+VT D +LSAQFEHT+L+T  G E+LT
Sbjct:   83 VQPGMTTGDLDQLAEERIRSLGATPSFKGYHGFPASICACVNNEVVHGIPRRRKKIRSGDLLKVDTGAYFQGYHGDSCITIAVGKVSPQAQRLMEVAEGALYAGIEQVKPGNYLMDIAGAIEDYVKPTGYTIVEEFTGHGVGQALHEDPHVFNVRCRDLPNVKLKPGMTLAIEPIVNAGSRFTRTLGDRWTVVTVDNALSAQFEHTVLVTATGYELLT 300          
BLAST of CX047178 vs. ExPASy Swiss-Prot
Match: AMPM_TREPA (Methionine aminopeptidase OS=Treponema pallidum GN=map PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.851e-36
Identity = 77/218 (35.32%), Postives = 117/218 (53.67%), Query Frame = -3
Query:  285 VKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHY--RNNDHGRMVLNQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILTQ 932
            VKPG+ T E+D    + I   G  P+    G FP + C S+NE + HG+P +R ++DGD +++DV + LNGY  D   T   G V  E   L++VT +CL   I  C  G   + + + +   A R+ +GVV ++ GHG+G   H +P + +       + R +      IEPMLT+G+       D WT+VT DGS +   EHT+ +  D  E+LT+
Sbjct:   31 VKPGVQTQELDAFCQRFIRSVGGVPAWFSEG-FPAAACISINEEVIHGLPSARVIQDGDLVSLDVGINLNGYISDACRTVPVGGVAHERLELLRVTTECLRAGIKACRAGARVRAVSRAVYAVAARHRFGVVYEYCGHGVGLAVHEEPNIPNVPGLEGPNPRFLPGMVVAIEPMLTLGTDEVRTSADGWTVVTADGSCACHVEHTVAVFADHTEVLTE 247          
BLAST of CX047178 vs. ExPASy Swiss-Prot
Match: AMPM_BORBU (Methionine aminopeptidase OS=Borrelia burgdorferi GN=map PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 7.033e-36
Identity = 80/216 (37.04%), Postives = 119/216 (55.09%), Query Frame = -3
Query:  291 VKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYRNN--DHGRMVLNQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEIL 932
            + PGI+T E+D   +  II N A P+  GY GF  ++C SVNE + HGIP  R L DGD ++ID  V L+G++ D + TF  G+VD     L++VT   L+K I+    G     I K I+D+   + +G+VR++ GHG+G   H +P V +Y      + R+       IEPM+ +      +  D WT+   D S SA FEHT+ +  DG  ++
Sbjct:   33 IVPGISTKELDLIAYDFIIKNRAKPAFKGYRGFKGTICASVNEEVIHGIPGKRKLADGDIVSIDCGVILDGFYSDMAKTFKVGNVDSSIDKLLEVTNASLYKGIAEMKVGNRILNISKAIEDYIKPFGFGIVREYTGHGVGFELHEEPSVPNYYAPFFKNIRIQEGMVLAIEPMVNLRGHKVSIKSDGWTVFASDLSYSAHFEHTVAVV-DGLPLI 247          
BLAST of CX047178 vs. ExPASy Swiss-Prot
Match: AMPM_AQUAE (Methionine aminopeptidase OS=Aquifex aeolicus GN=map PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.567e-35
Identity = 79/226 (34.96%), Postives = 128/226 (56.64%), Query Frame = -3
Query:  285 VKPGITTDEIDKAVHQMIIDNGAYPSPLGYGG------FPKSVCTSVNECICHGIPDS-RALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVV---LHYRNNDHGRMVLNQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILTQ 932
            VKPG++T +++    +     GA P+ LGY        +P ++C S+N+ + HG+P   + +++GD ++ID     +GY GD++ T   G    EA+ L++ TK+ L+ AI    PG +   I K I + A++Y +  + ++ GHG+GR  H +P V   +      + R+       IEPML+IG+   V   D WT+ T+DGSL+A FEHT+ IT+ G  ILT+
Sbjct:   32 VKPGVSTWDLEMIARKETEKRGAKPAFLGYKPPFSDVRYPAALCISINDEVVHGLPKKEKVIKEGDVVSIDFGAIYDGYAGDSAITVIAGKGSPEAQKLLEATKEALYNAIEKALPGKKVGDITKAIHETAEKYGFKTILRYGGHGVGRKVHQEPFVPNNVKDIGKKNPRLRQGMVIAIEPMLSIGTEETVEDGDGWTVKTKDGSLAAHFEHTVAITKKGPVILTE 257          
BLAST of CX047178 vs. ExPASy Swiss-Prot
Match: AMPM_STAAW (Methionine aminopeptidase OS=Staphylococcus aureus (strain MW2) GN=map PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.242e-32
Identity = 73/218 (33.49%), Postives = 111/218 (50.92%), Query Frame = -3
Query:  285 KPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLV-KVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADP--VVLHYRNNDHGRMVLNQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILTQ 929
            KPGITT E+D    ++  + GA  +P+    FP   C SVNE + HGIP  R + +GD +NIDV+   NGY+ DT  +F  G+ DD  +  V  V       AI+   PG +   IGK + + A + +  V++   GHG+G   H  P  V+ ++   D   +       IEP ++  +       + W   T D S  AQ EHT+++T+DG  + T+
Sbjct:   31 KPGITTKELDNIAKELFEEYGAISAPIHDENFPGQTCISVNEEVAHGIPSKRVIREGDLVNIDVSALKNGYYADTGISFVVGESDDPMKQKVCDVATMAFENAIAKVKPGTKLSNIGKAVHNTARQNDLKVIKNLTGHGVGLSLHEAPAHVLNYFDPKDKTLLTEGMVLAIEPFISSNASFVTEGKNEWAFETSDKSFVAQIEHTVIVTKDGPILTTK 248          
BLAST of CX047178 vs. ExPASy Swiss-Prot
Match: AMPM_STAAS (Methionine aminopeptidase OS=Staphylococcus aureus (strain MSSA476) GN=map PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.242e-32
Identity = 73/218 (33.49%), Postives = 111/218 (50.92%), Query Frame = -3
Query:  285 KPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLV-KVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADP--VVLHYRNNDHGRMVLNQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILTQ 929
            KPGITT E+D    ++  + GA  +P+    FP   C SVNE + HGIP  R + +GD +NIDV+   NGY+ DT  +F  G+ DD  +  V  V       AI+   PG +   IGK + + A + +  V++   GHG+G   H  P  V+ ++   D   +       IEP ++  +       + W   T D S  AQ EHT+++T+DG  + T+
Sbjct:   31 KPGITTKELDNIAKELFEEYGAISAPIHDENFPGQTCISVNEEVAHGIPSKRVIREGDLVNIDVSALKNGYYADTGISFVVGESDDPMKQKVCDVATMAFENAIAKVKPGTKLSNIGKAVHNTARQNDLKVIKNLTGHGVGLSLHEAPAHVLNYFDPKDKTLLTEGMVLAIEPFISSNASFVTEGKNEWAFETSDKSFVAQIEHTVIVTKDGPILTTK 248          
BLAST of CX047178 vs. ExPASy Swiss-Prot
Match: AMPM_STAAR (Methionine aminopeptidase OS=Staphylococcus aureus (strain MRSA252) GN=map PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.242e-32
Identity = 73/218 (33.49%), Postives = 111/218 (50.92%), Query Frame = -3
Query:  285 KPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLV-KVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADP--VVLHYRNNDHGRMVLNQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILTQ 929
            KPGITT E+D    ++  + GA  +P+    FP   C SVNE + HGIP  R + +GD +NIDV+   NGY+ DT  +F  G+ DD  +  V  V       AI+   PG +   IGK + + A + +  V++   GHG+G   H  P  V+ ++   D   +       IEP ++  +       + W   T D S  AQ EHT+++T+DG  + T+
Sbjct:   31 KPGITTKELDNIAKELFEEYGAISAPIHDENFPGQTCISVNEEVAHGIPSKRVIREGDLVNIDVSALKNGYYADTGISFVVGESDDPMKQKVCDVATMAFENAIAKVKPGTKLSNIGKAVHNTARQNDLKVIKNLTGHGVGLSLHEAPAHVLNYFDPKDKTLLTEGMVLAIEPFISSNASFVTEGKNEWAFETSDKSFVAQIEHTVIVTKDGPILTTK 248          
BLAST of CX047178 vs. ExPASy Swiss-Prot
Match: AMPM_STAAN (Methionine aminopeptidase OS=Staphylococcus aureus (strain N315) GN=map PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.242e-32
Identity = 73/218 (33.49%), Postives = 111/218 (50.92%), Query Frame = -3
Query:  285 KPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLV-KVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADP--VVLHYRNNDHGRMVLNQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILTQ 929
            KPGITT E+D    ++  + GA  +P+    FP   C SVNE + HGIP  R + +GD +NIDV+   NGY+ DT  +F  G+ DD  +  V  V       AI+   PG +   IGK + + A + +  V++   GHG+G   H  P  V+ ++   D   +       IEP ++  +       + W   T D S  AQ EHT+++T+DG  + T+
Sbjct:   31 KPGITTKELDNIAKELFEEYGAISAPIHDENFPGQTCISVNEEVAHGIPSKRVIREGDLVNIDVSALKNGYYADTGISFVVGESDDPMKQKVCDVATMAFENAIAKVKPGTKLSNIGKAVHNTARQNDLKVIKNLTGHGVGLSLHEAPAHVLNYFDPKDKTLLTEGMVLAIEPFISSNASFVTEGKNEWAFETSDKSFVAQIEHTVIVTKDGPILTTK 248          
The following BLAST results are available for this feature:
BLAST of CX047178 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
AMPM_CHLMU1.197e-4341.82Methionine aminopeptidase OS=Chlamydia muridarum G... [more]
AMPM_MYCCT6.568e-4238.07Methionine aminopeptidase OS=Mycoplasma capricolum... [more]
AMPM3_SYNY31.618e-4039.91Putative methionine aminopeptidase C OS=Synechocys... [more]
AMPM_TREPA1.851e-3635.32Methionine aminopeptidase OS=Treponema pallidum GN... [more]
AMPM_BORBU7.033e-3637.04Methionine aminopeptidase OS=Borrelia burgdorferi ... [more]
AMPM_AQUAE1.567e-3534.96Methionine aminopeptidase OS=Aquifex aeolicus GN=m... [more]
AMPM_STAAW1.242e-3233.49Methionine aminopeptidase OS=Staphylococcus aureus... [more]
AMPM_STAAS1.242e-3233.49Methionine aminopeptidase OS=Staphylococcus aureus... [more]
AMPM_STAAR1.242e-3233.49Methionine aminopeptidase OS=Staphylococcus aureus... [more]
AMPM_STAAN1.242e-3233.49Methionine aminopeptidase OS=Staphylococcus aureus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_12F03_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12F03-K5-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047178 ID=CX047178; Name=CX047178; organism=Citrus sinensis; type=EST; length=934bp
CTTTTTTTTGACAAACGATGCAAATACCATTTAAGAATTATTGATTCTCA
GTACAAGCAAAATTATATGTTCATTGTCTGTAAAATCACCAATCAAAGAT
TAAAAAGTAGCACTTACAGAAAAGATGAAAAAGAAACAATGATAAAAACA
AGAATGCAATGCCTCCACCAACAACAAAATTTTGATTAGGAAGAGGCAAT
CCAATGACATCCAATTGGTGTATATTCTCCGAATGGGCAGATCTGCAACT
ATTTAATGTAATGGTACGAATTCCATGTTTAACACTGCGTTAATATCTCA
GCACCGTCCCTGGTAATAAGAATAGTGTGCTCAAATTGTGCTGACAGGCT
CCCGTCTTCTGTAACAATTGTCCAGTTGTCATCCCACATAACAGGATTTA
TGCTACCTATTGTCAGCATCGGTTCTATGGTGAAAGTTTGATTCAACACC
ATGCGTCCATGATCATTGTTCCTATAGTGTAAAACAACAGGATCCGCATG
GAAAACACGTCCAATCCCATGGCCAACGAATTGTCGAACAACGCCATAAT
TATATCTATCTGCATGGTCCTGAATGGTTTTGCCAATTTTCTTGTACTCC
ATTCCCGGTGCACATACCGATATAGCTTTATGTAGACAATCTTTGGTTAC
CTTCACCAGATTTCTGGCTTCATCATCAACATCTCCACAAAAGAAAGTCG
CTGATGTATCACCATGATAACCATTTAGATAAACAGTCACATCAATATTT
ATAGTATCACCATCCTCAAGTGCACGGGAATCCGGTATTCCGTGGCAGAT
ACATTCATTCACTGATGTACAGACACTCTTTGGAAACCCACCATAGCCAA
GAGGTGAGGGATATGCTCCATTATCAATAATCATTTGATGAACTGCTTTG
TCAATTTCATCTGTTGTAATACCTGGCTTAACTA
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