CX047178

Overview
NameCX047178
Unique NameCX047178
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length934
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047178 vs. ExPASy Swiss-Prot
Match: AMPM_MYCGE (Methionine aminopeptidase OS=Mycoplasma genitalium GN=map PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 9.229e-20
Identity = 59/208 (28.37%), Postives = 94/208 (45.19%), Query Frame = -3
Query:  288 IDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHKAIS-VCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYRNNDHG-RMVLNQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILT 905
            ID+ + Q I    A  +  GY GFP   C S+N+ + HG+ D    +D D + +D+ +  +GY  D + T      D +A  L+   +    K I            +   IQ + +   Y +V++F GHG G   H DP++L++   + G R+       IEPM+   S    M  +NW ++T     +   E    IT +G E LT
Sbjct:   40 IDRLIKQFIEQKQAKCAFHGYLGFPGFNCLSLNQTVIHGVADQTVFKDSDKLTLDIGIDYHGYLCDAAFTLLGNKADPKAVKLLNDVEQAFSKVIEPELFVNNPIGNLSNAIQTYFENKGYFLVKEFGGHGCGIKIHEDPLILNWGEKNQGVRLQEGMVICIEPMVMTDSSEITMAANNWNVLTLKSKFNCHVEQMYHITNNGFECLT 247          
BLAST of CX047178 vs. ExPASy Swiss-Prot
Match: AMPM_PYRFU (Methionine aminopeptidase OS=Pyrococcus furiosus GN=map PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.629e-16
Identity = 58/181 (32.04%), Postives = 99/181 (54.70%), Query Frame = -3
Query:  402 KPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIP---DSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRV-FHADPVVLH-YRNNDHGRMVLNQTFTIEPMLTIGS 929
            +PG+   E+ +++ +MI++ G  P+      FP ++  S+NE   H  P   D+  L++GD + IDV V+++G+  DT+ T   G  +DE   L++  K+ L+ AISV   G+E K++GK I++   +  +  +    GH I R   HA   + + YR +D+  +     F IEP  TIG+
Sbjct:   25 RPGMLLLELAESIEKMIMELGGKPA------FPVNL--SINEIAAHYTPYKGDTTVLKEGDYLKIDVGVHIDGFIADTAVTVRVGMEEDE---LMEAAKEALNAAISVARAGVEIKELGKAIENEIRKRGFKPIVNLSGHKIERYKLHAGISIPNIYRPHDNYVLKEGDVFAIEPFATIGA 194          
BLAST of CX047178 vs. ExPASy Swiss-Prot
Match: AMPM_PYRAB (Methionine aminopeptidase OS=Pyrococcus abyssi GN=map PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.629e-16
Identity = 57/181 (31.49%), Postives = 96/181 (53.04%), Query Frame = -3
Query:  402 KPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIP---DSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRV-FHADPVVLH-YRNNDHGRMVLNQTFTIEPMLTIGS 929
            KPG++  E+ + +   II+ GA P+      FP ++  S+NE   H  P   D   L++GD + ID+ V+++GY  DT+ T   G  +D+   L++  ++ L  AISV   G+E K++G+ I+D   +  +  +    GH I R   HA   + + YR +D+ ++     F IEP  T G+
Sbjct:   25 KPGVSLLELAEKIEGRIIELGAKPA------FPVNL--SLNEIAAHYTPYKGDETTLKEGDYLKIDIGVHIDGYIADTAVTVRVGMEEDD---LMEAAREALESAISVARAGVEIKELGRAIEDEIRKRGFNPIVNLSGHKIERYKLHAGISIPNIYRPHDNYKLREGDVFAIEPFATTGA 194          
BLAST of CX047178 vs. ExPASy Swiss-Prot
Match: AMPM_PYRHO (Methionine aminopeptidase OS=Pyrococcus horikoshii GN=map PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 4.012e-15
Identity = 57/181 (31.49%), Postives = 93/181 (51.38%), Query Frame = -3
Query:  402 KPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIP---DSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRV-FHADPVVLH-YRNNDHGRMVLNQTFTIEPMLTIGS 929
            KPG++  E+ + +   I++ G  P+      FP ++  S+NE   H  P   D   L++GD + ID+ V+++GY  DT+ T   G   DE   L++  K+ L  AISV   G+E K++GK I++   +  +  +    GH I R   HA   + + YR +D+  +     F IEP  T G+
Sbjct:   25 KPGVSLLELAEKIESRIVELGGKPA------FPANL--SLNEVAAHYTPYKGDQTVLKEGDYLKIDLGVHIDGYIADTAVTVRVGMDFDE---LMEAAKEALESAISVARAGVEVKELGKAIENEIRKRGFNPIVNLSGHKIERYKLHAGVSIPNIYRPHDNYVLQEGDVFAIEPFATTGA 194          
BLAST of CX047178 vs. ExPASy Swiss-Prot
Match: AMPM_ARCFU (Methionine aminopeptidase OS=Archaeoglobus fulgidus GN=map PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.991e-14
Identity = 53/180 (29.44%), Postives = 83/180 (46.11%), Query Frame = -3
Query:  405 VKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIP---DSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHG-IGRVFHADPVVLHYRNNDHGRMVLNQTFTIEPMLTIG 932
            + PG+   E+ + V   II+ GA P+      FP ++  S+N    H  P   D R  ++GD + +DV  +++GY  D + T   GD  +    LVK  K+ L  A+ V   G+   +IGK I+D    Y +  +    GHG +  + HA P + +Y       +       IEP  T G
Sbjct:   27 IAPGVKILEVAEFVENRIIELGAKPA------FPANI--SINSDAAHFTPKKNDERTFKEGDVVKLDVGAHIDGYIADMAVTVDLGDNTE----LVKAAKEALEAAMEVVRAGVSVSEIGKAIEDAITNYGFKPIVNLTGHGLLPYLNHAPPSIYNYATEKGVTLEEGMVVAIEPFATNG 194          
BLAST of CX047178 vs. ExPASy Swiss-Prot
Match: AMPM_METTH (Methionine aminopeptidase OS=Methanobacterium thermoautotrophicum GN=map PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.366e-13
Identity = 48/180 (26.67%), Postives = 83/180 (46.11%), Query Frame = -3
Query:  405 VKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIP---DSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGR-VFHADPVVLHYRNNDHGRMVLNQTFTIEPMLTIG 932
            ++ G+   E+   V   II+ G  P+      FP +V  SVNE   H      D   + DGD + +D+  +++G+  DT+ T   GDVDD+   ++   ++ L  AIS    G+E  +IG+ I++    +    V    GH + R + H+   + +    +  ++       IEP  T G
Sbjct:   26 IRDGLPIIELVNYVEDRIIEEGGRPA------FPCNV--SVNEVTAHYTSPPGDDSVIGDGDLVKLDLGAHVDGFIADTAITVPVGDVDDKCHQMMDAAREALENAISTIRAGVEVGEIGRVIEETIHSHGMNPVSNLTGHSMERWILHSGLSIPNINERNTHQLEEGDVLAIEPFATDG 197          
BLAST of CX047178 vs. ExPASy Swiss-Prot
Match: AMPM_PYRKO (Methionine aminopeptidase OS=Pyrococcus kodakaraensis GN=map PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.208e-11
Identity = 51/182 (28.02%), Postives = 88/182 (48.35%), Query Frame = -3
Query:  402 VKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIP---DSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRV-FHADPVVLH-YRNNDHGRMVLNQTFTIEPMLTIGS 932
            +KPG    +I + V + I++ G  P+      FP ++  S+NE   H  P   D   L++GD + +D+ V+++GY  DT+ TF  G  +DE   L++  ++ L  AI+    G+  + + + I++      +  +    GH + R   HA   V + YR  D   +     F IEP  T G+
Sbjct:   25 IKPGAKLYDIAEFVERRIVELGGKPA------FPCNL--SINEIAAHYTPYKGDGTVLKEGDYLKLDIGVHVDGYIADTAVTFRVGMEEDE---LMEAAREALENAIATVRAGVMIRDVARAIEETIRGKGFNPIVNLSGHKVERYKLHAGVSVPNVYREADTYVLQEGDVFAIEPFATTGA 195          
BLAST of CX047178 vs. ExPASy Swiss-Prot
Match: PEPQ_PYRFU (Xaa-Pro dipeptidase OS=Pyrococcus furiosus GN=pepQ PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.691e-11
Identity = 45/185 (24.32%), Postives = 79/185 (42.70%), Query Frame = -3
Query:  285 FPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYG-VVRQFVGHGIGRVFHADPVVLHYRNNDHGRMVLNQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILTQ 836
            F   + +     + HG+   + +E GD + ID+    N Y+ D + T   G  +++ R + ++  +   +A+    PGM  K++    ++    Y YG      +GHG+G   H  P +  Y   D   +      TIEP + I  +  V                 + E T+LIT +GA+ LT+
Sbjct:  178 FDTIIASGHRSALPHGVASDKRIERGDLVVIDLGALYNHYNSDITRTIVVGSPNEKQREIYEIVLEAQKRAVEAAKPGMTAKELDSIAREIIKEYGYGDYFIHSLGHGVGLEIHEWPRISQY---DETVLKEGMVITIEPGIYIPKLGGV-----------------RIEDTVLITENGAKRLTK 342          
The following BLAST results are available for this feature:
BLAST of CX047178 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
AMPM_MYCGE9.229e-2028.37Methionine aminopeptidase OS=Mycoplasma genitalium... [more]
AMPM_PYRFU3.629e-1632.04Methionine aminopeptidase OS=Pyrococcus furiosus G... [more]
AMPM_PYRAB3.629e-1631.49Methionine aminopeptidase OS=Pyrococcus abyssi GN=... [more]
AMPM_PYRHO4.012e-1531.49Methionine aminopeptidase OS=Pyrococcus horikoshii... [more]
AMPM_ARCFU1.991e-1429.44Methionine aminopeptidase OS=Archaeoglobus fulgidu... [more]
AMPM_METTH8.366e-1326.67Methionine aminopeptidase OS=Methanobacterium ther... [more]
AMPM_PYRKO1.208e-1128.02Methionine aminopeptidase OS=Pyrococcus kodakaraen... [more]
PEPQ_PYRFU2.691e-1124.32Xaa-Pro dipeptidase OS=Pyrococcus furiosus GN=pepQ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_12F03_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12F03-K5-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047178 ID=CX047178; Name=CX047178; organism=Citrus sinensis; type=EST; length=934bp
CTTTTTTTTGACAAACGATGCAAATACCATTTAAGAATTATTGATTCTCA
GTACAAGCAAAATTATATGTTCATTGTCTGTAAAATCACCAATCAAAGAT
TAAAAAGTAGCACTTACAGAAAAGATGAAAAAGAAACAATGATAAAAACA
AGAATGCAATGCCTCCACCAACAACAAAATTTTGATTAGGAAGAGGCAAT
CCAATGACATCCAATTGGTGTATATTCTCCGAATGGGCAGATCTGCAACT
ATTTAATGTAATGGTACGAATTCCATGTTTAACACTGCGTTAATATCTCA
GCACCGTCCCTGGTAATAAGAATAGTGTGCTCAAATTGTGCTGACAGGCT
CCCGTCTTCTGTAACAATTGTCCAGTTGTCATCCCACATAACAGGATTTA
TGCTACCTATTGTCAGCATCGGTTCTATGGTGAAAGTTTGATTCAACACC
ATGCGTCCATGATCATTGTTCCTATAGTGTAAAACAACAGGATCCGCATG
GAAAACACGTCCAATCCCATGGCCAACGAATTGTCGAACAACGCCATAAT
TATATCTATCTGCATGGTCCTGAATGGTTTTGCCAATTTTCTTGTACTCC
ATTCCCGGTGCACATACCGATATAGCTTTATGTAGACAATCTTTGGTTAC
CTTCACCAGATTTCTGGCTTCATCATCAACATCTCCACAAAAGAAAGTCG
CTGATGTATCACCATGATAACCATTTAGATAAACAGTCACATCAATATTT
ATAGTATCACCATCCTCAAGTGCACGGGAATCCGGTATTCCGTGGCAGAT
ACATTCATTCACTGATGTACAGACACTCTTTGGAAACCCACCATAGCCAA
GAGGTGAGGGATATGCTCCATTATCAATAATCATTTGATGAACTGCTTTG
TCAATTTCATCTGTTGTAATACCTGGCTTAACTA
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