CX047176

Overview
NameCX047176
Unique NameCX047176
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length935
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX047176 vs. ExPASy Swiss-Prot
Match: DAPH_STRZT (2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase OS=Streptococcus pneumoniae (strain Taiwan19F-14) GN=dapH PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.871e-11
Identity = 36/101 (35.64%), Postives = 55/101 (54.46%), Query Frame = -2 
Query:  206 IHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLV 508
            I+  A+IG G + D   G ++G  A++G N  +     L G  +       ++GD VLIGA A ++  V+IG G+ V AG++V  DVP      G PAR++
Sbjct:  114 INIGAEIGAGTMID--MGAILGGRAIVGKNSHVGAGAVLAGVIEPVSAEPVRVGDNVLIGANAVVIEGVQIGSGSVVAAGAIVTQDVPENVVVAGVPARII 212
[Close]
BLAST of CX047176 vs. ExPASy Swiss-Prot
Match: DAPH_STRTD (2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) GN=dapH PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.871e-11
Identity = 36/101 (35.64%), Postives = 55/101 (54.46%), Query Frame = -2 
Query:  206 IHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLV 508
            I+  A+IG G + D   G ++G  A +G N  I     L G  + +     +IGD VL+GA A ++  V++G G+ V AG++V  DVP      G PAR++
Sbjct:  114 INIGAEIGAGTMID--MGAILGGRATVGKNSHIGAGAVLAGVIEPASAEPVRIGDNVLVGANAVVIEGVQVGNGSVVAAGAIVTQDVPENVVVAGVPARII 212
[Close]
BLAST of CX047176 vs. ExPASy Swiss-Prot
Match: DAPH_STRT2 (2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=dapH PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.871e-11
Identity = 36/101 (35.64%), Postives = 55/101 (54.46%), Query Frame = -2 
Query:  206 IHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLV 508
            I+  A+IG G + D   G ++G  A +G N  I     L G  + +     +IGD VL+GA A ++  V++G G+ V AG++V  DVP      G PAR++
Sbjct:  114 INIGAEIGAGTMID--MGAILGGRATVGKNSHIGAGAVLAGVIEPASAEPVRIGDNVLVGANAVVIEGVQVGNGSVVAAGAIVTQDVPENVVVAGVPARII 212
[Close]
BLAST of CX047176 vs. ExPASy Swiss-Prot
Match: DAPH_STRT1 (2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase OS=Streptococcus thermophilus (strain CNRZ 1066) GN=dapH PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.871e-11
Identity = 36/101 (35.64%), Postives = 55/101 (54.46%), Query Frame = -2 
Query:  206 IHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLV 508
            I+  A+IG G + D   G ++G  A +G N  I     L G  + +     +IGD VL+GA A ++  V++G G+ V AG++V  DVP      G PAR++
Sbjct:  114 INIGAEIGAGTMID--MGAILGGRATVGKNSHIGAGAVLAGVIEPASAEPVRIGDNVLVGANAVVIEGVQVGNGSVVAAGAIVTQDVPENVVVAGVPARII 212
[Close]
BLAST of CX047176 vs. ExPASy Swiss-Prot
Match: DAPH_STRSY (2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase OS=Streptococcus suis (strain 05ZYH33) GN=dapH PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 7.871e-11
Identity = 36/101 (35.64%), Postives = 55/101 (54.46%), Query Frame = -2 
Query:  206 IHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLV 508
            I+  A+IG G + D   G ++G  A +G N  I     L G  + +     ++GD VL+GA A ++  V+IG G+ V AG++V  DVP      G PAR++
Sbjct:  114 INIGAEIGPGTMID--MGAILGGRATVGKNSHIGAGAVLAGVIEPASAEPVRVGDNVLVGANAVVIEGVQIGSGSVVAAGAIVTQDVPENVVVAGVPARII 212
[Close]
BLAST of CX047176 vs. ExPASy Swiss-Prot
Match: DAPH_STRS2 (2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase OS=Streptococcus suis (strain 98HAH33) GN=dapH PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.871e-11
Identity = 36/101 (35.64%), Postives = 55/101 (54.46%), Query Frame = -2 
Query:  206 IHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLV 508
            I+  A+IG G + D   G ++G  A +G N  I     L G  + +     ++GD VL+GA A ++  V+IG G+ V AG++V  DVP      G PAR++
Sbjct:  114 INIGAEIGPGTMID--MGAILGGRATVGKNSHIGAGAVLAGVIEPASAEPVRVGDNVLVGANAVVIEGVQIGSGSVVAAGAIVTQDVPENVVVAGVPARII 212
The following BLAST results are available for this feature:
BLAST of CX047176 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
DAPH_STRZT7.871e-1135.642,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-ace... [more]
DAPH_STRTD7.871e-1135.642,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-ace... [more]
DAPH_STRT27.871e-1135.642,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-ace... [more]
DAPH_STRT17.871e-1135.642,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-ace... [more]
DAPH_STRSY7.871e-1135.642,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-ace... [more]
DAPH_STRS27.871e-1135.642,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-ace... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_12F02_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12F02-K3-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047176 ID=CX047176; Name=CX047176; organism=Citrus sinensis; type=EST; length=935bp
AAAAAACTAAATATCTGTAACAGCTGCAACATTGTAATGCAATATTACCA
CAATCTTCTTATACATACATAATACAGTCACTACTAGATAGCAAAATGAG
ATCAATTGATCAAATAATATAATCTGACCACTCAGAGATGAAGGATGTAT
GATCCATGGACTCCCCTGGACATTCCTCATTTGAAGAGGTCTTCTCCTTT
CCTCCCACCAACCTTGCTGGGTTCCCCACTGCAGTGGCTCTTGCTGGCAC
ATCAATCAGTACCACCGACCCAGCCCCAACTTTCGCACCCTCTCCAATCT
TCACGTTCCCTAATATGGTTGCTCCAGCCCCGATCAACACCCCATCTCCA
ATCTTCGGGTGCCGATCCCCGCTTGCCTTCCCCGTACCGCCAAGTGTAAC
ATGATGCAAGATTGACACATTGTTGCCAATAACTGCGGTCTCACCTATTA
CCACACCTGTTGCATGATCAAACAAAATCCCTTTCCCTATTTTTGCAGCT
GGGTGTATATCAACAGCAAACACATCAGAGATACGGGATTGTAATGCTAG
TGCCAGCGGCCTACGTGACTGAGTCCAGAGCTTGTGTGCTACTCGGTGAG
CCTGGCAAGCCAAGAAGCCTTTGTAATTGAGGAGGCAGTGAGAGAAGGAA
ACGCAAGCAGGGTCACGGACACGGGCGGCGCGAAGATCGGCGACGGCCGC
GGCGCGGAGAGCGGGGTCGGAGGAGAAAGTGTCCAGAAAGAGATCGTACA
AGAGAGTGGAGAGAAGCGTGGAGGAGCAGAGCTTGTTTCCCAAATGAAAC
GCCAGCGATCTCTCCAAGGAAGAGTGAGAGAGGATGGTCGAGTAGAGGTA
GCTGGCTAAAGCCGGCTCAGACTCGGCGTCGCGGCGTGCCTCGGGCTTTA
TCTGGGCCCACACCCAAGCCTCGTCGTCACCGGCG
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