CX047172

Overview
NameCX047172
Unique NameCX047172
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length539
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX047172 vs. ExPASy Swiss-Prot
Match: H4_OLILU (Histone H4 OS=Olisthodiscus luteus PE=1 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 8.900e-37
Identity = 77/78 (98.72%), Postives = 78/78 (100.00%), Query Frame = 1 
Query:  136 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 369
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CX047172 vs. ExPASy Swiss-Prot
Match: H4_SOLLC (Histone H4 OS=Solanum lycopersicum PE=3 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 1.518e-36
Identity = 77/78 (98.72%), Postives = 78/78 (100.00%), Query Frame = 1 
Query:  136 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 369
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CX047172 vs. ExPASy Swiss-Prot
Match: H4_SOLCH (Histone H4 OS=Solanum chacoense PE=3 SV=3)

HSP 1 Score: 152.14 bits (383), Expect = 1.518e-36
Identity = 77/78 (98.72%), Postives = 78/78 (100.00%), Query Frame = 1 
Query:  136 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 369
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CX047172 vs. ExPASy Swiss-Prot
Match: H4_CAPAN (Histone H4 OS=Capsicum annuum PE=3 SV=3)

HSP 1 Score: 152.14 bits (383), Expect = 1.518e-36
Identity = 77/78 (98.72%), Postives = 78/78 (100.00%), Query Frame = 1 
Query:  136 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 369
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CX047172 vs. ExPASy Swiss-Prot
Match: H4_XENTR (Histone H4 OS=Xenopus tropicalis GN=TGas006m08.1 PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.983e-36
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = 1 
Query:  136 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 369
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CX047172 vs. ExPASy Swiss-Prot
Match: H4_XENLA (Histone H4 OS=Xenopus laevis PE=1 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 1.983e-36
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = 1 
Query:  136 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 369
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CX047172 vs. ExPASy Swiss-Prot
Match: H4_XENBO (Histone H4 OS=Xenopus borealis PE=3 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 1.983e-36
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = 1 
Query:  136 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 369
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CX047172 vs. ExPASy Swiss-Prot
Match: H4_URECA (Histone H4 OS=Urechis caupo PE=3 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 1.983e-36
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = 1 
Query:  136 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 369
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CX047172 vs. ExPASy Swiss-Prot
Match: H4_TIGCA (Histone H4 OS=Tigriopus californicus GN=His4 PE=3 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 1.983e-36
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = 1 
Query:  136 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 369
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CX047172 vs. ExPASy Swiss-Prot
Match: H4_RHYAM (Histone H4 OS=Rhynchosciara americana GN=His4 PE=3 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 1.983e-36
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = 1 
Query:  136 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 369
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
The following BLAST results are available for this feature:
BLAST of CX047172 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
H4_OLILU8.900e-3798.72Histone H4 OS=Olisthodiscus luteus PE=1 SV=2[more]
H4_SOLLC1.518e-3698.72Histone H4 OS=Solanum lycopersicum PE=3 SV=2[more]
H4_SOLCH1.518e-3698.72Histone H4 OS=Solanum chacoense PE=3 SV=3[more]
H4_CAPAN1.518e-3698.72Histone H4 OS=Capsicum annuum PE=3 SV=3[more]
H4_XENTR1.983e-3697.44Histone H4 OS=Xenopus tropicalis GN=TGas006m08.1 P... [more]
H4_XENLA1.983e-3697.44Histone H4 OS=Xenopus laevis PE=1 SV=2[more]
H4_XENBO1.983e-3697.44Histone H4 OS=Xenopus borealis PE=3 SV=2[more]
H4_URECA1.983e-3697.44Histone H4 OS=Urechis caupo PE=3 SV=2[more]
H4_TIGCA1.983e-3697.44Histone H4 OS=Tigriopus californicus GN=His4 PE=3 ... [more]
H4_RHYAM1.983e-3697.44Histone H4 OS=Rhynchosciara americana GN=His4 PE=3... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_12E12_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12E12-I23-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047172 ID=CX047172; Name=CX047172; organism=Citrus sinensis; type=EST; length=539bp
GGCACATTCAAATTTCTCTATCCAAATTCTCTTTCGAGGAACAGCGGAAA
GTCTTTTAAGTTCCTCGCTAAAATGTCTGGGCGCGGTAAGGGAGGCAAGG
GATTGGGAAAGGGAGGCGCCAAGCGTCACCGTAAGGTGCTTCGCGATAAC
ATTCAGGGTATCACAAAGCCGGCAATCCGGCGTTTGGCTCGTAGAGGTGG
AGTCAAGCGTATCAGCGGCTTGATCTACGAGGAGACACGTGGCGTCCTGA
AGATATTCTTGGAGAACGTCATCCGTGACGCCGTGACCTACACTGAGCAC
GCCAGGAGAAAGACCGTGACCGCGATGGACGTCGTTTACGCTCTCAAGAG
GCAGGGCAGGACTCTTTATGGATTTGGGGGTTAATTGTCTTAGGGTTCTG
GAATTAAATGTTAATAGATCTTGACTCTAGATCTTGATCTGGTAGATGGG
GCTCTTAGTAGTTTGTTATTAGGTTGCTGCTTTGTAATTCTATCAAGTTA
AATCTTATCTTTATATTTGAGGCAAAAAAAAAAAAAAAA
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