CX047152

Overview
NameCX047152
Unique NameCX047152
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length833
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047152 vs. ExPASy Swiss-Prot
Match: DCHS_MORMO (Histidine decarboxylase OS=Morganella morganii GN=hdc PE=1 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 3.868e-27
Identity = 61/143 (42.66%), Postives = 90/143 (62.94%), Query Frame = 1
Query:  403 HLGYPYNLDFDYGALAQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLISGEIDCAGFKAKLLQNKDKPAIINVN 831
            ++GYP + DFDY  L +   FSINN GD     NY ++S  FE  V+++FA L+++   + WGY+TN GTEGN+ G  +GRE+FPDG LY S+++HYSV K  ++ R++   V+   +GEID      K+  +K+   II  N
Sbjct:   25 NIGYPESADFDYTNLERFLRFSINNCGDWGEYCNYLLNSFDFEKEVMEYFADLFKIPFEQSWGYVTNGGTEGNMFGCYLGREIFPDGTLYYSKDTHYSVAKIVKLLRIKSQVVESQPNGEIDYDDLMKKIADDKEAHPIIFAN 167          
BLAST of CX047152 vs. ExPASy Swiss-Prot
Match: DCHS_VIBAN (Histidine decarboxylase OS=Vibrio anguillarum GN=hdc PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.277e-26
Identity = 61/148 (41.22%), Postives = 89/148 (60.14%), Query Frame = 1
Query:  388 ERTKHHLGYPYNLDFDYGALAQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLISGEIDCAGFKAKLLQNKDKPAIINVN 831
            E    ++GYP +  FDY  L +   FSINN GD   ESNY ++S +FE  V+ +F++L+++  N+ WGYI+N GTEGN+    + RE+FP   +Y S E+HYSV K  R+  +   K+  L SGEID      ++ ++K K  II  N
Sbjct:   20 ENQYFNVGYPESAAFDYSILEKFMKFSINNCGDWREESNYKLNSFEFEKEVMRFFSQLFKIPYNDSWGYISNGGTEGNMFSCYLAREIFPTAYIYYSEETHYSVDKIVRLLNIPARKIRSLPSGEIDYQNLVDQIQKDKQKNPIIFAN 167          
BLAST of CX047152 vs. ExPASy Swiss-Prot
Match: DCHS_VIBHB (Histidine decarboxylase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=hdc PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.586e-26
Identity = 61/143 (42.66%), Postives = 87/143 (60.84%), Query Frame = 1
Query:  403 HLGYPYNLDFDYGALAQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLISGEIDCAGFKAKLLQNKDKPAIINVN 831
            ++GYP + DFDY  L +   FSINN GD   ESNY ++S  FE  V+ +F++L+ + + E WGYI+N GTEGNL    + RE+FP   LY S E+HYSV K AR+  +   K+  L +GEID      ++ +++    II  N
Sbjct:   25 NVGYPESADFDYSELEKFMKFSINNCGDWREESNYKLNSFDFEKDVMRYFSQLFNIPHQESWGYISNGGTEGNLFSCYLARELFPTAYLYYSEETHYSVDKIARLLNIPSRKIPALSNGEIDYQQLVTQIERDQQGNPIIFAN 167          
BLAST of CX047152 vs. ExPASy Swiss-Prot
Match: DCHS_ENTAE (Histidine decarboxylase OS=Enterobacter aerogenes GN=hdc PE=3 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 6.828e-24
Identity = 56/143 (39.16%), Postives = 88/143 (61.54%), Query Frame = 1
Query:  403 HLGYPYNLDFDYGALAQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLISGEIDCAGFKAKLLQNKDKPAIINVN 831
            ++GYP + DFDY  L +   FSINN GD     NY ++S  FE  V+++F+ ++++   E WGY+TN GTE N+ G  +GRE+FP+G LY S+++HYSV K  ++ R++   V+    GE+D      K+  + ++  II  N
Sbjct:   25 NIGYPESADFDYTMLERFLRFSINNCGDWGEYCNYLLNSFDFEKEVMEYFSGIFKIPFAESWGYVTNGGTESNMFGCYLGRELFPEGTLYYSKDTHYSVAKIVKLLRIKSQLVESQPDGEMDYDDLINKIRTSGERHPIIFAN 167          
The following BLAST results are available for this feature:
BLAST of CX047152 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
DCHS_MORMO3.868e-2742.66Histidine decarboxylase OS=Morganella morganii GN=... [more]
DCHS_VIBAN4.277e-2641.22Histidine decarboxylase OS=Vibrio anguillarum GN=h... [more]
DCHS_VIBHB5.586e-2642.66Histidine decarboxylase OS=Vibrio harveyi (strain ... [more]
DCHS_ENTAE6.828e-2439.16Histidine decarboxylase OS=Enterobacter aerogenes ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_12D12_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12D12-G23-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047152 ID=CX047152; Name=CX047152; organism=Citrus sinensis; type=EST; length=833bp
CTCTCGTGTCTGATTGAACGAGTACACCGCCTCTTAGTCCACCAATCAAA
TCAAAGGACTCTCATTTCCATTCTCAGATCAAAGGATCAGTTATTTTTAG
CAAGTTATATGGCTGAAGCGATGATGAAGCAGGTGAACGGAGGGTTGGCC
GAGAAATTTGGTCCGGTCTTCGATCCAACGGCCGTGGTGGCGGAACCGGT
GCCTCCGGTGGTGACGGAAAACGGCCATGAGCTGAAGCATAAGACCGCCG
AGAAAGAGATTGTGCTTGGGAAGAACGTACACGCGTCGTGCTTCTCTGTC
ACGGAACCCGAGGCAGACGACGAGTTCACTGGCGACAAGGAGGCTTACAT
GGCTGGGGTCTTGGCTCGATATAGGAAGACCTTAATGGAACGGACCAAAC
ACCATTTAGGTTATCCTTATAATCTGGACTTCGATTATGGTGCTCTTGCT
CAGTTGCAGCATTTCTCCATCAATAATCTTGGGGATCCATTTATTGAGAG
CAACTATGGTGTTCATTCAAGACAGTTTGAAGTTGGTGTTTTGGATTGGT
TTGCCCGTCTTTGGGAACTAGAGAATAATGAGTACTGGGGATACATTACA
AACTGTGGTACAGAAGGCAACCTTCATGGAATATTAGTTGGGAGAGAGGT
GTTTCCTGATGGAATTCTTTATGCATCACGAGAATCGCATTATTCTGTCT
TTAAAGCAGCACGTATGTATCGAATGGAATGTGTGAAGGTTGACTGTTTG
ATCTCCGGTGAAATTGATTGTGCTGGTTTTAAAGCTAAATTACTCCAGAA
CAAGGACAAGCCAGCTATCATTAATGTTAATAT
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