CX047132

Overview
NameCX047132
Unique NameCX047132
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length850
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047132 vs. ExPASy Swiss-Prot
Match: GPDA_DROME (Glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic OS=Drosophila melanogaster GN=Gpdh PE=1 SV=3)

HSP 1 Score: 151.369 bits (381), Expect = 6.112e-36
Identity = 76/135 (56.30%), Postives = 98/135 (72.59%), Query Frame = -1
Query:  446 LFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMRAFSKLLFSSVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSHR 850
            LF   +F V  V D + VE+CG LKN+VA  AGFVDGL++G+NTKAA++R+GL EM  F  + +   K STFFESCGVADLITTC GGRNR+V+EAF  +   ++ ++LE EML GQKLQG  TA EV  +L ++
Sbjct:  182 LFQANHFRVVVVDDADAVEVCGALKNIVACGAGFVDGLKLGDNTKAAVIRLGLMEMIRFVDVFYPGSKLSTFFESCGVADLITTCYGGRNRRVSEAFVTS--GKTIEELEKEMLNGQKLQGPPTAEEVNYMLKNK 314          
BLAST of CX047132 vs. ExPASy Swiss-Prot
Match: GPD2_SCHPO (Glycerol-3-phosphate dehydrogenase [NAD+] 2 OS=Schizosaccharomyces pombe GN=gpd2 PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.362e-35
Identity = 80/146 (54.79%), Postives = 101/146 (69.18%), Query Frame = -1
Query:  413 LFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMRAFSKLLFSSVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSHRQP*LNTVSANP 850
            LF+ PYF V  V+DV GV L G LKN+VA+AAG +DGLE+G+NTK+A+MRIGL EM+ F ++ F     +   ESCG+ADLITTCLGGRN K A AF K    +    +E E+L GQKLQG +TA+EVYE L ++    N VS  P
Sbjct:  212 LFNRPYFRVNIVEDVPGVALGGALKNIVAVAAGIIDGLELGDNTKSAVMRIGLLEMQKFGRMFFDCKPLTMSEESCGIADLITTCLGGRNHKCAVAFVKT--GKPMHVVEQELLDGQKLQGAATAKEVYEFLDNQ----NKVSEFP 351          
BLAST of CX047132 vs. ExPASy Swiss-Prot
Match: GPD1_SCHPO (Glycerol-3-phosphate dehydrogenase [NAD+] 1 OS=Schizosaccharomyces pombe GN=gpd1 PE=1 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 1.079e-32
Identity = 73/132 (55.30%), Postives = 92/132 (69.70%), Query Frame = -1
Query:  455 LFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMRAFSKLLFSSVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVL 850
            +F  PYF V +V DV GV L G LKNVVA+A GF DGLE G NTKAAIMR GL EM+ F+   F S   +   +SCG+ADL+T+CLGGRN + AEAF K    +S + LE E+L GQ LQG +T+++V+E L
Sbjct:  208 VFDRPYFSVVSVDDVAGVALGGALKNVVAMAVGFADGLEWGGNTKAAIMRRGLLEMQKFATTFFDSDPRTMVEQSCGIADLVTSCLGGRNNRCAEAFVKT--GKSLETLEKELLGGQLLQGAATSKDVHEFL 337          
BLAST of CX047132 vs. ExPASy Swiss-Prot
Match: GPDH2_CAEEL (Probable glycerol-3-phosphate dehydrogenase 2 OS=Caenorhabditis elegans GN=gpdh-2 PE=2 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 1.409e-32
Identity = 73/129 (56.59%), Postives = 86/129 (66.67%), Query Frame = -1
Query:  464 LFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMRAFSKLLFSSVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVY 850
            LF T  F +  V+D   VELCG LKNVVA AAGF DGL  G+NTKAA++R+GL E   F +  +      TFFESCG+ADLITTC GGRNRKV EAF K    +S  ++E E+L GQ  QG  TA EVY
Sbjct:  224 LFHTDNFRINVVEDAHTVELCGALKNVVACAAGFTDGLGYGDNTKAAVIRLGLMETTKFVEHYYPGSNLQTFFESCGIADLITTCYGGRNRKVCEAFVKT--GKSMAEVEKELLNGQSAQGPLTAEEVY 350          
BLAST of CX047132 vs. ExPASy Swiss-Prot
Match: GPD1_YARLI (Glycerol-3-phosphate dehydrogenase [NAD+] 1 OS=Yarrowia lipolytica GN=GPD1 PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 7.732e-31
Identity = 74/137 (54.01%), Postives = 89/137 (64.96%), Query Frame = -1
Query:  446 LFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMRAFSKLLFSSVKDSTF-FESCGVADLITTCLGGRNRKVAEAFAKNEGK-RSFDDLEAEMLQGQKLQGVSTAREVYEVLSHR 850
            LF  PYF V  VQDV GV + G LKNVVA+ AGFV+G   G+N KAAIMR G+ EM  FSK  F     +T   ES GVADLIT+C GGRN KV  AF K  G  ++  D+E E+L GQ  QGV T  EV+E+L ++
Sbjct:  229 LFHRPYFHVRCVQDVAGVSIGGALKNVVALCAGFVEGKNWGDNAKAAIMRRGMLEMINFSKRFFPETDINTLTVESAGVADLITSCAGGRNFKVGRAFGKESGSGKTIQDVEKELLNGQSAQGVITCNEVHELLKNK 365          
BLAST of CX047132 vs. ExPASy Swiss-Prot
Match: GPD1_YEAST (Glycerol-3-phosphate dehydrogenase [NAD+] 1 OS=Saccharomyces cerevisiae GN=GPD1 PE=1 SV=4)

HSP 1 Score: 130.183 bits (326), Expect = 1.458e-29
Identity = 68/133 (51.13%), Postives = 90/133 (67.67%), Query Frame = -1
Query:  455 LFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMRAFSKLLFSSVKDSTFF-ESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVL 850
            LF  PYF V+ ++DV G+ +CG LKNVVA+  GFV+GL  GNN  AAI R+GL E+  F ++ F   ++ T++ ES GVADLITTC GGRN KVA   A   GK ++ + E E+L GQ  QG+ T +EV+E L
Sbjct:  221 LFHRPYFHVSVIEDVAGISICGALKNVVALGCGFVEGLGWGNNASAAIQRVGLGEIIRFGQMFFPESREETYYQESAGVADLITTCAGGRNVKVARLMA-TSGKDAW-ECEKELLNGQSAQGLITCKEVHEWL 351          
BLAST of CX047132 vs. ExPASy Swiss-Prot
Match: GPD1_SACBA (Glycerol-3-phosphate dehydrogenase [NAD+] 1 OS=Saccharomyces bayanus GN=GPD1 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.458e-29
Identity = 68/133 (51.13%), Postives = 90/133 (67.67%), Query Frame = -1
Query:  455 LFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMRAFSKLLFSSVKDSTFF-ESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVL 850
            LF  PYF V+ ++DV G+ +CG LKNVVA+  GFV+GL  GNN  AAI R+GL E+  F ++ F   ++ T++ ES GVADLITTC GGRN KVA   A   GK ++ + E E+L GQ  QG+ T +EV+E L
Sbjct:  221 LFHRPYFHVSVIEDVAGISICGALKNVVALGCGFVEGLGWGNNASAAIQRVGLGEIIRFGQMFFPESREETYYQESAGVADLITTCAGGRNVKVARLMA-TSGKDAW-ECEKELLNGQSAQGLITCKEVHEWL 351          
BLAST of CX047132 vs. ExPASy Swiss-Prot
Match: GPD_ASHGO (Glycerol-3-phosphate dehydrogenase [NAD+] OS=Ashbya gossypii GN=GPD PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.904e-29
Identity = 70/133 (52.63%), Postives = 87/133 (65.41%), Query Frame = -1
Query:  455 LFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMRAFSKLLFSSVKDSTFF-ESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVL 850
            LF  PYF V  V DV G+ + G LKNVVA+A GFV GL  GNN  AA+ R+GL EM  F+++ F   K  TF+ ES GVADLITTC GGRN ++  A A  E  +S  +LE E+L GQ  QG+ T +EV+E L
Sbjct:  259 LFHRPYFHVNVVDDVAGISVAGALKNVVALACGFVLGLGWGNNAAAAVQRVGLSEMIKFARMFFPESKVETFYQESAGVADLITTCAGGRNVRIGRAMA--ETGKSAQELEKELLNGQSSQGIYTTQEVHEWL 389          
BLAST of CX047132 vs. ExPASy Swiss-Prot
Match: GPD_PICAN (Glycerol-3-phosphate dehydrogenase [NAD+] OS=Pichia angusta GN=GPD PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.487e-29
Identity = 71/134 (52.99%), Postives = 89/134 (66.42%), Query Frame = -1
Query:  452 LFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMRAFSKLLFSSVKDSTF-FESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLS 850
            LF  PYF V  + DV GV L G LKNV+A+AAGFV+GL  G+N K+A+MRIGL EM  F+ + F   + +TF  ES GVAD+ITTC GGRN +V    A  E K S  + E  +L GQ  QG+ T REVYE+L+
Sbjct:  214 LFHRPYFHVRVIDDVAGVSLSGALKNVIAMAAGFVEGLGWGDNAKSAVMRIGLVEMIKFAHMFFEDCQSTTFTHESAGVADIITTCAGGRNVRVGRYMA--EHKVSGFEAEKVLLNGQSCQGLHTTREVYELLA 345          
BLAST of CX047132 vs. ExPASy Swiss-Prot
Match: GPD2_CANGA (Glycerol-3-phosphate dehydrogenase [NAD+] 2 OS=Candida glabrata GN=GPD2 PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 4.242e-29
Identity = 69/134 (51.49%), Postives = 88/134 (65.67%), Query Frame = -1
Query:  452 LFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMRAFSKLLFSSVKDSTFF-ESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLS 850
            LF  PYF V+ + DV G+ + G LKNVVA+  GFV+GL  GNN  AAI R+GL E+  F ++ F   +  T++ ES GVADLITTC GGRN +VA   AK    +S +D E E+L GQ  QGV T +EV+E LS
Sbjct:  249 LFHRPYFHVSVIDDVAGISIAGALKNVVALGCGFVEGLGWGNNAAAAIQRVGLGEIIKFGQMFFPESRVETYYQESAGVADLITTCSGGRNVRVATHMAKT--GKSAEDSEKELLNGQSAQGVITCKEVHEWLS 380          
The following BLAST results are available for this feature:
BLAST of CX047132 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 315
Match NameE-valueIdentityDescription
GPDA_DROME6.112e-3656.30Glycerol-3-phosphate dehydrogenase [NAD+], cytopla... [more]
GPD2_SCHPO1.362e-3554.79Glycerol-3-phosphate dehydrogenase [NAD+] 2 OS=Sch... [more]
GPD1_SCHPO1.079e-3255.30Glycerol-3-phosphate dehydrogenase [NAD+] 1 OS=Sch... [more]
GPDH2_CAEEL1.409e-3256.59Probable glycerol-3-phosphate dehydrogenase 2 OS=C... [more]
GPD1_YARLI7.732e-3154.01Glycerol-3-phosphate dehydrogenase [NAD+] 1 OS=Yar... [more]
GPD1_YEAST1.458e-2951.13Glycerol-3-phosphate dehydrogenase [NAD+] 1 OS=Sac... [more]
GPD1_SACBA1.458e-2951.13Glycerol-3-phosphate dehydrogenase [NAD+] 1 OS=Sac... [more]
GPD_ASHGO1.904e-2952.63Glycerol-3-phosphate dehydrogenase [NAD+] OS=Ashby... [more]
GPD_PICAN2.487e-2952.99Glycerol-3-phosphate dehydrogenase [NAD+] OS=Pichi... [more]
GPD2_CANGA4.242e-2951.49Glycerol-3-phosphate dehydrogenase [NAD+] 2 OS=Can... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_12C09_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12C09-E17-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047132 ID=CX047132; Name=CX047132; organism=Citrus sinensis; type=EST; length=850bp
TTTTTTTTTTTTTTCTAACATTTGATAAGAAGGTATTATGCACTCTGAAT
ATCAGATTCTGCGTCACATTTGGCACTCTGAACATCAAAAGAGAACACTT
TGAATATCTAAAACAATGCAAAAACAGAAGATACTAGTAGTAAAAGCTTT
TGAAGGCTAAAGGCATCTCTGAAGCTTGAAGGTTCCTGACACGCTGCATT
TTCAGTTCCTTTGATCGATCTCACTGTTACGGCAACTGATTTTGCATGAG
TTAATTAGCAGCCAGAAGTTTGTCTAGGCTTTGCTTCTGTTCATGCTGCA
CAACTTAGAAAAAGTTTACTTTCAAAACTGTACCTCAAATACGTGAAATA
TATTACTTCTATCTGTGGGAAGAGTCAGTAGTACTGAGTAGAGCCTTCCA
GTAGAGACAATCTGGGTTTGCGCTCACTGTATTCAACTATGGCTGACGGT
GGCTTAGCACTTCATAAACTTCTCTTGCAGTTGAGACTCCCTGTAATTTC
TGGCCCTGAAGCATCTCTGCTTCTAGATCATCGAAAGACCTTTTCCCTTC
GTTCTTAGCAAAAGCCTCGGCAACTTTTCTGTTTCTTCCTCCCAAGCATG
TTGTGATGAGATCAGCTACACCACAGCTCTCAAAGAAGGTGCTGTCCTTA
ACAGATGAAAACAACAACTTGGAAAAGGCTCTCATCTCTCTGAGACCAAT
TCTCATTATTGCAGCCTTAGTGTTATTTCCCATTTCAAGGCCATCAACGA
AACCTGCAGCGATTGCTACAACATTTTTCAAGGTCCCACATAGTTCAACT
CCTTCCACGTCTTGGACAGCAGTGACCATAAAATAAGGAGTACTAAATAG
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