CX047132

Overview
NameCX047132
Unique NameCX047132
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length850
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX047132 vs. ExPASy Swiss-Prot
Match: GPDA_STRR6 (Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=gpsA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.730e-14
Identity = 53/133 (39.85%), Postives = 72/133 (54.14%), Query Frame = -1 
Query:  458 LFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMRAFSKLLFSSVKDSTFFESCGVADLIT--TCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEV 850
            LFS  YF +    DV GVE  G LKN++A+ AG + GL  G+N KAAI+  GL E+      L +S    T+    GV DLI   T +  RN +  +A  + E   S  D+EA M  G  ++G+ST R  YE+
Sbjct:  170 LFSNHYFRLYTNTDVIGVETAGALKNIIAVGAGALHGLGFGDNAKAAIIARGLAEITRLGVALGAS--PLTYSGLSGVGDLIVTGTSIHSRNWRAGDALGRGE---SLADIEANM--GMVIEGISTTRAAYEL 295
[Close]
BLAST of CX047132 vs. ExPASy Swiss-Prot
Match: GPDA_STRPS (Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Streptococcus pneumoniae (strain CGSP14) GN=gpsA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.730e-14
Identity = 53/133 (39.85%), Postives = 72/133 (54.14%), Query Frame = -1 
Query:  458 LFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMRAFSKLLFSSVKDSTFFESCGVADLIT--TCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEV 850
            LFS  YF +    DV GVE  G LKN++A+ AG + GL  G+N KAAI+  GL E+      L +S    T+    GV DLI   T +  RN +  +A  + E   S  D+EA M  G  ++G+ST R  YE+
Sbjct:  170 LFSNHYFRLYTNTDVIGVETAGALKNIIAVGAGALHGLGFGDNAKAAIIARGLAEITRLGVALGAS--PLTYSGLSGVGDLIVTGTSIHSRNWRAGDALGRGE---SLADIEANM--GMVIEGISTTRAAYEL 295
[Close]
BLAST of CX047132 vs. ExPASy Swiss-Prot
Match: GPDA_STRPN (Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Streptococcus pneumoniae GN=gpsA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.730e-14
Identity = 53/133 (39.85%), Postives = 72/133 (54.14%), Query Frame = -1 
Query:  458 LFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMRAFSKLLFSSVKDSTFFESCGVADLIT--TCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEV 850
            LFS  YF +    DV GVE  G LKN++A+ AG + GL  G+N KAAI+  GL E+      L +S    T+    GV DLI   T +  RN +  +A  + E   S  D+EA M  G  ++G+ST R  YE+
Sbjct:  170 LFSNHYFRLYTNTDVIGVETAGALKNIIAVGAGALHGLGFGDNAKAAIIARGLAEITRLGVALGAS--PLTYSGLSGVGDLIVTGTSIHSRNWRAGDALGRGE---SLADIEANM--GMVIEGISTTRAAYEL 295
[Close]
BLAST of CX047132 vs. ExPASy Swiss-Prot
Match: GPDA_STRPJ (Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Streptococcus pneumoniae (strain ATCC 700669 / Spain 23F-1) GN=gpsA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.730e-14
Identity = 53/133 (39.85%), Postives = 72/133 (54.14%), Query Frame = -1 
Query:  458 LFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMRAFSKLLFSSVKDSTFFESCGVADLIT--TCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEV 850
            LFS  YF +    DV GVE  G LKN++A+ AG + GL  G+N KAAI+  GL E+      L +S    T+    GV DLI   T +  RN +  +A  + E   S  D+EA M  G  ++G+ST R  YE+
Sbjct:  170 LFSNHYFRLYTNTDVIGVETAGALKNIIAVGAGALHGLGFGDNAKAAIIARGLAEITRLGVALGAS--PLTYSGLSGVGDLIVTGTSIHSRNWRAGDALGRGE---SLADIEANM--GMVIEGISTTRAAYEL 295
[Close]
BLAST of CX047132 vs. ExPASy Swiss-Prot
Match: GPDA_STRPI (Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Streptococcus pneumoniae (strain Hungary19A-6) GN=gpsA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.730e-14
Identity = 53/133 (39.85%), Postives = 72/133 (54.14%), Query Frame = -1 
Query:  458 LFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMRAFSKLLFSSVKDSTFFESCGVADLIT--TCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEV 850
            LFS  YF +    DV GVE  G LKN++A+ AG + GL  G+N KAAI+  GL E+      L +S    T+    GV DLI   T +  RN +  +A  + E   S  D+EA M  G  ++G+ST R  YE+
Sbjct:  170 LFSNHYFRLYTNTDVIGVETAGALKNIIAVGAGALHGLGFGDNAKAAIIARGLAEITRLGVALGAS--PLTYSGLSGVGDLIVTGTSIHSRNWRAGDALGRGE---SLADIEANM--GMVIEGISTTRAAYEL 295
[Close]
BLAST of CX047132 vs. ExPASy Swiss-Prot
Match: GPDA_STRP7 (Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Streptococcus pneumoniae (strain 70585) GN=gpsA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.730e-14
Identity = 53/133 (39.85%), Postives = 72/133 (54.14%), Query Frame = -1 
Query:  458 LFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMRAFSKLLFSSVKDSTFFESCGVADLIT--TCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEV 850
            LFS  YF +    DV GVE  G LKN++A+ AG + GL  G+N KAAI+  GL E+      L +S    T+    GV DLI   T +  RN +  +A  + E   S  D+EA M  G  ++G+ST R  YE+
Sbjct:  170 LFSNHYFRLYTNTDVIGVETAGALKNIIAVGAGALHGLGFGDNAKAAIIARGLAEITRLGVALGAS--PLTYSGLSGVGDLIVTGTSIHSRNWRAGDALGRGE---SLADIEANM--GMVIEGISTTRAAYEL 295
[Close]
BLAST of CX047132 vs. ExPASy Swiss-Prot
Match: GPDA_STRP2 (Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) GN=gpsA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.730e-14
Identity = 53/133 (39.85%), Postives = 72/133 (54.14%), Query Frame = -1 
Query:  458 LFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMRAFSKLLFSSVKDSTFFESCGVADLIT--TCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEV 850
            LFS  YF +    DV GVE  G LKN++A+ AG + GL  G+N KAAI+  GL E+      L +S    T+    GV DLI   T +  RN +  +A  + E   S  D+EA M  G  ++G+ST R  YE+
Sbjct:  170 LFSNHYFRLYTNTDVIGVETAGALKNIIAVGAGALHGLGFGDNAKAAIIARGLAEITRLGVALGAS--PLTYSGLSGVGDLIVTGTSIHSRNWRAGDALGRGE---SLADIEANM--GMVIEGISTTRAAYEL 295
[Close]
BLAST of CX047132 vs. ExPASy Swiss-Prot
Match: GPDA_PELPB (Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=gpsA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.730e-14
Identity = 53/134 (39.55%), Postives = 77/134 (57.46%), Query Frame = -1 
Query:  458 LFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREM-RAFSKLLFSSVKDSTFFESCGVADLITTCLG--GRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEV 850
            +F T  F V    D+ GVE+ G++KN++AIAAG  DG+  G+N KAAI+  G+ E+ R  SKL   +V   T     G+ DL+ TCL    RNR V E   +    RS D++ ++M      +GV ++R VYE+
Sbjct:  167 VFHTSMFRVYVNTDIVGVEIAGSVKNIIAIAAGISDGIGFGDNAKAAIITRGMAEISRLCSKLGGEAV---TISGLAGIGDLVVTCLSRHSRNRYVGEEIGRG---RSLDEVISQM--NMIAEGVHSSRAVYEL 292
[Close]
BLAST of CX047132 vs. ExPASy Swiss-Prot
Match: GPDA_THET8 (Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=gpsA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.260e-14
Identity = 45/109 (41.28%), Postives = 65/109 (59.63%), Query Frame = -1 
Query:  530 LFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMRAFSKLLFSSVKDSTFFESCGVADLITTC--LGGRNRKVAEAFAKNEGKRSFD 850
            LFS P F V   +D  GVEL G +KNV+A+AAG VDGL +G+N KAA++  GL+EM  F   L    +++TF+   G+ DL+ T   L  RNR   E+  +   + + +
Sbjct:  160 LFSGPTFRVYTSRDRRGVELGGAVKNVLALAAGMVDGLRLGDNAKAALLTRGLKEMVRFGTAL--GGEEATFYGLAGLGDLLATAYSLHSRNRMAGESLVRGVDREALE 266
[Close]
BLAST of CX047132 vs. ExPASy Swiss-Prot
Match: GPDA_THET2 (Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=gpsA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.260e-14
Identity = 45/109 (41.28%), Postives = 65/109 (59.63%), Query Frame = -1 
Query:  530 LFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMRAFSKLLFSSVKDSTFFESCGVADLITTC--LGGRNRKVAEAFAKNEGKRSFD 850
            LFS P F V   +D  GVEL G +KNV+A+AAG VDGL +G+N KAA++  GL+EM  F   L    +++TF+   G+ DL+ T   L  RNR   E+  +   + + +
Sbjct:  160 LFSGPTFRVYTSRDRRGVELGGAVKNVLALAAGMVDGLRLGDNAKAALLTRGLKEMVRFGTAL--GGEEATFYGLAGLGDLLATAYSLHSRNRMAGESLVRGVDREALE 266
The following BLAST results are available for this feature:
BLAST of CX047132 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 315
Match NameE-valueIdentityDescription
GPDA_STRR61.730e-1439.85Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=St... [more]
GPDA_STRPS1.730e-1439.85Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=St... [more]
GPDA_STRPN1.730e-1439.85Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=St... [more]
GPDA_STRPJ1.730e-1439.85Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=St... [more]
GPDA_STRPI1.730e-1439.85Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=St... [more]
GPDA_STRP71.730e-1439.85Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=St... [more]
GPDA_STRP21.730e-1439.85Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=St... [more]
GPDA_PELPB1.730e-1439.55Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Pe... [more]
GPDA_THET82.260e-1441.28Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Th... [more]
GPDA_THET22.260e-1441.28Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Th... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS09_12C09_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12C09-E17-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047132 ID=CX047132; Name=CX047132; organism=Citrus sinensis; type=EST; length=850bp
TTTTTTTTTTTTTTCTAACATTTGATAAGAAGGTATTATGCACTCTGAAT
ATCAGATTCTGCGTCACATTTGGCACTCTGAACATCAAAAGAGAACACTT
TGAATATCTAAAACAATGCAAAAACAGAAGATACTAGTAGTAAAAGCTTT
TGAAGGCTAAAGGCATCTCTGAAGCTTGAAGGTTCCTGACACGCTGCATT
TTCAGTTCCTTTGATCGATCTCACTGTTACGGCAACTGATTTTGCATGAG
TTAATTAGCAGCCAGAAGTTTGTCTAGGCTTTGCTTCTGTTCATGCTGCA
CAACTTAGAAAAAGTTTACTTTCAAAACTGTACCTCAAATACGTGAAATA
TATTACTTCTATCTGTGGGAAGAGTCAGTAGTACTGAGTAGAGCCTTCCA
GTAGAGACAATCTGGGTTTGCGCTCACTGTATTCAACTATGGCTGACGGT
GGCTTAGCACTTCATAAACTTCTCTTGCAGTTGAGACTCCCTGTAATTTC
TGGCCCTGAAGCATCTCTGCTTCTAGATCATCGAAAGACCTTTTCCCTTC
GTTCTTAGCAAAAGCCTCGGCAACTTTTCTGTTTCTTCCTCCCAAGCATG
TTGTGATGAGATCAGCTACACCACAGCTCTCAAAGAAGGTGCTGTCCTTA
ACAGATGAAAACAACAACTTGGAAAAGGCTCTCATCTCTCTGAGACCAAT
TCTCATTATTGCAGCCTTAGTGTTATTTCCCATTTCAAGGCCATCAACGA
AACCTGCAGCGATTGCTACAACATTTTTCAAGGTCCCACATAGTTCAACT
CCTTCCACGTCTTGGACAGCAGTGACCATAAAATAAGGAGTACTAAATAG
back to top