CX047127

Overview
NameCX047127
Unique NameCX047127
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length784
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047127 vs. ExPASy Swiss-Prot
Match: PSB1_RAT (Proteasome subunit beta type-1 OS=Rattus norvegicus GN=Psmb1 PE=1 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 3.146e-12
Identity = 54/206 (26.21%), Postives = 90/206 (43.69%), Query Frame = -3
Query:  213 GKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVFALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEP-----------------DELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 779
            G++   +ASD RL         D  +  K+ D+  IG SG   D  TL + +  R K+Y+    + M     A+++  +LY +RF PY+   +I GL +E K  + + D +G+ +  +D   AG       G+  AM +P ++                  D     V    +S+ +RD  +G    + IVT   I+E  +  R D
Sbjct:   44 GEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIEGLDEEGKGAVYSFDPVGSYQ--RDSFKAG-------GSASAMLQPLLDNQVGFKNMQNVEHVPLTLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGIREETVPLRKD 240          
BLAST of CX047127 vs. ExPASy Swiss-Prot
Match: PSB1_ARATH (Proteasome subunit beta type-1 OS=Arabidopsis thaliana GN=PBF1 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 3.146e-12
Identity = 38/115 (33.04%), Postives = 60/115 (52.17%), Query Frame = -3
Query:  435 GKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVFALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKE 779
            G +   IA+D R+      ++ D+ +I K+ DR  +  SG   D + L + L  RH +YQ +  + M     A L+   LY KRF PY+   V+ GL +E K  + T D++G+ E
Sbjct:   23 GSDYCVIAADTRMSTGYSILSRDYSKIHKLADRAVLSSSGFQADVKALQKVLKSRHLIYQHQHNKQMSCPAMAQLLSNTLYFKRFFPYYAFNVLGGLDEEGKGCVFTYDAVGSYE 137          
BLAST of CX047127 vs. ExPASy Swiss-Prot
Match: PSB1B_CARAU (Proteasome subunit beta type-1-B OS=Carassius auratus GN=psmb1-B PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.109e-12
Identity = 49/199 (24.62%), Postives = 93/199 (46.73%), Query Frame = -3
Query:  213 GKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVFALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESL----------YGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 779
            G++   +ASD RL       + D  +  K+ D   IG SG   D  TL + +  R K+Y+    + M     A+++  +LY +RF PY+   +I GL +E +  + + D +G+ +  +D   AG +  ++          +   E + +  +  ++  + V    +S+ +RD  +G    + I+T   I+E I+  R D
Sbjct:   41 GEDFALVASDTRLSEGYSIHSRDSPKCYKLTDTTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKSMTSGAIAAMLSTILYGRRFFPYYVYNIIGGLDEEGRGAVYSFDPVGSYQ--RDTYKAGGSASAMLQPLLDNQIGFKNMENVEQVPLSQEKAVQLVKDVFISAAERDVYTGDALKICIITKEGIREEIVPLRKD 237          
BLAST of CX047127 vs. ExPASy Swiss-Prot
Match: PSB1A_CARAU (Proteasome subunit beta type-1-A OS=Carassius auratus GN=psmb1-A PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.109e-12
Identity = 49/199 (24.62%), Postives = 93/199 (46.73%), Query Frame = -3
Query:  213 GKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVFALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESL----------YGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 779
            G++   +ASD RL       + D  +  K+ D   IG SG   D  TL + +  R K+Y+    + M     A+++  +LY +RF PY+   +I GL +E +  + + D +G+ +  +D   AG +  ++          +   E + +  +  ++  + V    +S+ +RD  +G    + I+T   I+E I+  R D
Sbjct:   42 GEDFALVASDTRLSEGYSIHSRDSPKCYKLTDTTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKSMTSGAIAAMLSTILYGRRFFPYYVYNIIGGLDEEGRGAVYSFDPVGSYQ--RDTYKAGGSASAMLQPLLDNQIGFKNMENVEQVPLSQEKAVQLVKDVFISAAERDVYTGDALKICIITKEGIREEIVPLRKD 238          
BLAST of CX047127 vs. ExPASy Swiss-Prot
Match: PSMB_METTH (Proteasome subunit beta OS=Methanobacterium thermoautotrophicum GN=psmB PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.561e-11
Identity = 52/179 (29.05%), Postives = 89/179 (49.72%), Query Frame = -3
Query:  246 KNCFAIASDRR--LGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVFALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTE 776
            K+    A++RR  +G  +   ATD  +I KI + +   ++G   D+Q+L + L     LY++R    +  E  A+L   +L+  RF P+  Q ++ G+ DE+   I ++D  G   +   FV  G+     YG  E  +  ++  DE  +   +A+ S+++RD  SG G  V  VT  E
Sbjct:   18 KDGVVFATERRASMGNLIAHKATD--KIFKIDEHIAATIAGSVADAQSLMKYLKAEAALYRMRNSEKISIEAAAALAANILHSSRFYPFIVQTLLGGV-DENGAKIYSLDPSGGM-IPDKFVSTGSGSPVAYGVLEDRYSDELYVDEAVDVAIRAIKSAMERDTYSGNGILVATVTEEE 192          
BLAST of CX047127 vs. ExPASy Swiss-Prot
Match: PSB1_BOVIN (Proteasome subunit beta type-1 OS=Bos taurus GN=PSMB1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.561e-11
Identity = 54/206 (26.21%), Postives = 88/206 (42.72%), Query Frame = -3
Query:  213 GKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVFALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKP-----------------DMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 779
            G++   +ASD RL         D  +  K+ D+  IG SG   D  TL + +  R K+Y+    + M     A+++  +LY +RF PY+   +I GL +E K  + + D +G+ +  +D   AG       G+  AM +P                  +  D     V    +S+ +RD  +G    V IVT   I+   +  R D
Sbjct:   45 GEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQ--RDSFKAG-------GSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAAERDVYTGDALKVCIVTKEGIRGETVPLRKD 241          
BLAST of CX047127 vs. ExPASy Swiss-Prot
Match: PSB1_ORYSJ (Proteasome subunit beta type-1 OS=Oryza sativa subsp. japonica GN=PBF1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.039e-11
Identity = 49/202 (24.26%), Postives = 82/202 (40.59%), Query Frame = -3
Query:  213 GKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVFALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFK-------------PDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 779
            G +   +A+D RL V    +  D  +I ++ D+  +  SG   D + L++ L  R  LYQ +  + M     A L+   LY KRF PY+   V+ GL  E K  + T D++G+ E    +   GT    +    +   K               +   E  + V     S+ +RD  +G    + ++     K   +  R D
Sbjct:   21 GADYCVVAADTRLSVGYNILTRDHSKICELADKCALASSGFQGDIKALHKNLAARELLYQHQHNKRMSCPAMAQLLSNTLYYKRFFPYYAFNVLGGLDSEGKGCVFTYDAVGSYE-RTGYSAQGTGSALIMPVLDNQLKSPSPLLLPARDAVTPLSETEAVDLVKDVFASATERDIYTGDKLEIVVINKAGTKREYIDLRKD 221          
BLAST of CX047127 vs. ExPASy Swiss-Prot
Match: PSB9_MUSMB (Proteasome subunit beta type-9 OS=Mus musculus bactrianus GN=Psmb9 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.478e-11
Identity = 46/182 (25.27%), Postives = 88/182 (48.35%), Query Frame = -3
Query:  222 IASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVFALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTE--IKERILKG 761
            + SD R+      +   F ++S +H R+F  LSG A D+Q +     ++ +L+ L  E        A++V  + Y+ R        ++AG    +   +    ++G   + + F ++G+    +YG  +A +KP M P+E     + A+  +++RD  S  GG +Y+VT T   +  R++ G
Sbjct:   34 VGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYR-EDLLAHLIVAGWDQREGGQV--YGTMGGMLIRQPFTISGSGSSYIYGYVDAAYKPGMTPEECRRFTTNAITLAMNRDGSS--GGVIYLVTITAAGVDHRVILG 210          
BLAST of CX047127 vs. ExPASy Swiss-Prot
Match: PB6LB_SALSA (Proteasome subunit beta type-6-B like protein OS=Salmo salar GN=psmb6l-b PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.478e-11
Identity = 42/181 (23.20%), Postives = 90/181 (49.72%), Query Frame = -3
Query:  222 IASDRRLGVQLQTIATD-FQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVFALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKG 761
            I SD R  +    +++    ++ ++HDR+F  ++G   D+Q + +   F+   + ++ E     +  AS++  L Y  +        + AG   +  P + T+ ++G   L++ F + G+    +YG  +A +KPDM  +E  +  + AL  ++ RD +SG   H+ ++T   ++  ++ G
Sbjct:   30 IGSDSRASIGGSYVSSKTINKLIQVHDRIFCCIAGSLADAQAVTKAAKFQISFHSIQMESPPLVKAAASVLKELCYNNK-EELQAGFITAGWDRKKGPQVYTV-ALGGMLLSQPFTIGGSGSTYIYGYADAKYKPDMSKEECLQFATNALALAMGRDNVSGGVAHLVVITEEGVEHVVIPG 208          
BLAST of CX047127 vs. ExPASy Swiss-Prot
Match: PSB9_MUSSI (Proteasome subunit beta type-9 OS=Mus spicilegus GN=Psmb9 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.543e-11
Identity = 46/182 (25.27%), Postives = 87/182 (47.80%), Query Frame = -3
Query:  222 IASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVFALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTE--IKERILKG 761
            + SD R+      +   F ++S +H R+F  LSG A D+Q +     ++ +L+ L  E        A++V  + Y+ R        ++AG    +   +    ++G   + + F + G+    +YG  +A +KP M P+E     + A+  +++RD  S  GG +Y+VT T   +  R++ G
Sbjct:   34 VGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYR-EDLLAHLIVAGWDQREGGQV--YGTMGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTNAITLAMNRDGSS--GGVIYLVTITAAGVDHRVILG 210          
The following BLAST results are available for this feature:
BLAST of CX047127 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
PSB1_RAT3.146e-1226.21Proteasome subunit beta type-1 OS=Rattus norvegicu... [more]
PSB1_ARATH3.146e-1233.04Proteasome subunit beta type-1 OS=Arabidopsis thal... [more]
PSB1B_CARAU4.109e-1224.62Proteasome subunit beta type-1-B OS=Carassius aura... [more]
PSB1A_CARAU4.109e-1224.62Proteasome subunit beta type-1-A OS=Carassius aura... [more]
PSMB_METTH1.561e-1129.05Proteasome subunit beta OS=Methanobacterium thermo... [more]
PSB1_BOVIN1.561e-1126.21Proteasome subunit beta type-1 OS=Bos taurus GN=PS... [more]
PSB1_ORYSJ2.039e-1124.26Proteasome subunit beta type-1 OS=Oryza sativa sub... [more]
PSB9_MUSMB3.478e-1125.27Proteasome subunit beta type-9 OS=Mus musculus bac... [more]
PB6LB_SALSA3.478e-1123.20Proteasome subunit beta type-6-B like protein OS=S... [more]
PSB9_MUSSI4.543e-1125.27Proteasome subunit beta type-9 OS=Mus spicilegus G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_12C06_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12C06-E11-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047127 ID=CX047127; Name=CX047127; organism=Citrus sinensis; type=EST; length=784bp
TTTTTTTTTTTTTTTTTCCAGATAACCGCAAGCCCACGAACTTGGTCAAT
TCAGTTTGAAACTATTTCAAAGTACAACAATTTGAGAGCTATTAAACAAC
ATTCTTCATAAACAAATGAAAGTCAAGTTCAAGTCTACGGTCTTCTAATT
GAAAAATACTGGAGAGCGAACACAAGAAAAGGGGTGGCTTTCAGCACTGC
AGTTATAGATCAATCCATCCTTCCCTTCAAGATTCTTTCCTTTATTTCAG
TTGGTGTTACAATGTAAACATGTCCTCCCCAACCACTCAAACAGTCACGG
TCAACAGATGATAACAAAGCTTGAGATACAGTTTCAAACAACTCATCGGG
TTCCATATCAGGCTTGAACATTGCCTCACAGGCACCATAAAGAGACTCTC
CAGCAGTTCCAGCAACAACAAAATCTTTTGCAAGCTCCTTGGCTCCAATT
GAGTCCATTGTGCAGATAAAGGGCTTGTCTTCATCACTCAATCCAGCAAT
AACAGGTTGACAGAAGTAAGGGCCAAACCTTTTCTCATAAAGCAAAGCAA
AGACTAAGCTAGCAAAAGTTTCAGGCTTCATGTCCCTTTCCTCTCGCAGC
TGATACAATTTGTGACGAAACACCAGCCTTTGATACAAGGTCTGGGAATC
AGTGGCGAGTCCAGAGAGGCCGATAAAAAGGCGATCGTGAATTTTGGAAA
TTCGCTGAAAATCAGTGGCTATTGTCTGAAGCTGAACGCCGAGGCGCCGA
TCGCTGGCAATGGCAAAGCAGTTCTTTCCGACCA
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