CX047127
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX047127 vs. ExPASy Swiss-Prot
Match: PSB1_RAT (Proteasome subunit beta type-1 OS=Rattus norvegicus GN=Psmb1 PE=1 SV=3) HSP 1 Score: 72.4034 bits (176), Expect = 3.146e-12 Identity = 54/206 (26.21%), Postives = 90/206 (43.69%), Query Frame = -3 Query: 213 GKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVFALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEP-----------------DELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 779 G++ +ASD RL D + K+ D+ IG SG D TL + + R K+Y+ + M A+++ +LY +RF PY+ +I GL +E K + + D +G+ + +D AG G+ AM +P ++ D V +S+ +RD +G + IVT I+E + R D Sbjct: 44 GEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIEGLDEEGKGAVYSFDPVGSYQ--RDSFKAG-------GSASAMLQPLLDNQVGFKNMQNVEHVPLTLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGIREETVPLRKD 240
BLAST of CX047127 vs. ExPASy Swiss-Prot
Match: PSB1_ARATH (Proteasome subunit beta type-1 OS=Arabidopsis thaliana GN=PBF1 PE=1 SV=2) HSP 1 Score: 72.4034 bits (176), Expect = 3.146e-12 Identity = 38/115 (33.04%), Postives = 60/115 (52.17%), Query Frame = -3 Query: 435 GKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVFALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKE 779 G + IA+D R+ ++ D+ +I K+ DR + SG D + L + L RH +YQ + + M A L+ LY KRF PY+ V+ GL +E K + T D++G+ E Sbjct: 23 GSDYCVIAADTRMSTGYSILSRDYSKIHKLADRAVLSSSGFQADVKALQKVLKSRHLIYQHQHNKQMSCPAMAQLLSNTLYFKRFFPYYAFNVLGGLDEEGKGCVFTYDAVGSYE 137
BLAST of CX047127 vs. ExPASy Swiss-Prot
Match: PSB1B_CARAU (Proteasome subunit beta type-1-B OS=Carassius auratus GN=psmb1-B PE=2 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 4.109e-12 Identity = 49/199 (24.62%), Postives = 93/199 (46.73%), Query Frame = -3 Query: 213 GKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVFALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESL----------YGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 779 G++ +ASD RL + D + K+ D IG SG D TL + + R K+Y+ + M A+++ +LY +RF PY+ +I GL +E + + + D +G+ + +D AG + ++ + E + + + ++ + V +S+ +RD +G + I+T I+E I+ R D Sbjct: 41 GEDFALVASDTRLSEGYSIHSRDSPKCYKLTDTTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKSMTSGAIAAMLSTILYGRRFFPYYVYNIIGGLDEEGRGAVYSFDPVGSYQ--RDTYKAGGSASAMLQPLLDNQIGFKNMENVEQVPLSQEKAVQLVKDVFISAAERDVYTGDALKICIITKEGIREEIVPLRKD 237
BLAST of CX047127 vs. ExPASy Swiss-Prot
Match: PSB1A_CARAU (Proteasome subunit beta type-1-A OS=Carassius auratus GN=psmb1-A PE=2 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 4.109e-12 Identity = 49/199 (24.62%), Postives = 93/199 (46.73%), Query Frame = -3 Query: 213 GKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVFALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESL----------YGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 779 G++ +ASD RL + D + K+ D IG SG D TL + + R K+Y+ + M A+++ +LY +RF PY+ +I GL +E + + + D +G+ + +D AG + ++ + E + + + ++ + V +S+ +RD +G + I+T I+E I+ R D Sbjct: 42 GEDFALVASDTRLSEGYSIHSRDSPKCYKLTDTTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKSMTSGAIAAMLSTILYGRRFFPYYVYNIIGGLDEEGRGAVYSFDPVGSYQ--RDTYKAGGSASAMLQPLLDNQIGFKNMENVEQVPLSQEKAVQLVKDVFISAAERDVYTGDALKICIITKEGIREEIVPLRKD 238
BLAST of CX047127 vs. ExPASy Swiss-Prot
Match: PSMB_METTH (Proteasome subunit beta OS=Methanobacterium thermoautotrophicum GN=psmB PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.561e-11 Identity = 52/179 (29.05%), Postives = 89/179 (49.72%), Query Frame = -3 Query: 246 KNCFAIASDRR--LGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVFALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTE 776 K+ A++RR +G + ATD +I KI + + ++G D+Q+L + L LY++R + E A+L +L+ RF P+ Q ++ G+ DE+ I ++D G + FV G+ YG E + ++ DE + +A+ S+++RD SG G V VT E Sbjct: 18 KDGVVFATERRASMGNLIAHKATD--KIFKIDEHIAATIAGSVADAQSLMKYLKAEAALYRMRNSEKISIEAAAALAANILHSSRFYPFIVQTLLGGV-DENGAKIYSLDPSGGM-IPDKFVSTGSGSPVAYGVLEDRYSDELYVDEAVDVAIRAIKSAMERDTYSGNGILVATVTEEE 192
BLAST of CX047127 vs. ExPASy Swiss-Prot
Match: PSB1_BOVIN (Proteasome subunit beta type-1 OS=Bos taurus GN=PSMB1 PE=1 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.561e-11 Identity = 54/206 (26.21%), Postives = 88/206 (42.72%), Query Frame = -3 Query: 213 GKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVFALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKP-----------------DMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 779 G++ +ASD RL D + K+ D+ IG SG D TL + + R K+Y+ + M A+++ +LY +RF PY+ +I GL +E K + + D +G+ + +D AG G+ AM +P + D V +S+ +RD +G V IVT I+ + R D Sbjct: 45 GEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQ--RDSFKAG-------GSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAAERDVYTGDALKVCIVTKEGIRGETVPLRKD 241
BLAST of CX047127 vs. ExPASy Swiss-Prot
Match: PSB1_ORYSJ (Proteasome subunit beta type-1 OS=Oryza sativa subsp. japonica GN=PBF1 PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 2.039e-11 Identity = 49/202 (24.26%), Postives = 82/202 (40.59%), Query Frame = -3 Query: 213 GKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVFALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFK-------------PDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 779 G + +A+D RL V + D +I ++ D+ + SG D + L++ L R LYQ + + M A L+ LY KRF PY+ V+ GL E K + T D++G+ E + GT + + K + E + V S+ +RD +G + ++ K + R D Sbjct: 21 GADYCVVAADTRLSVGYNILTRDHSKICELADKCALASSGFQGDIKALHKNLAARELLYQHQHNKRMSCPAMAQLLSNTLYYKRFFPYYAFNVLGGLDSEGKGCVFTYDAVGSYE-RTGYSAQGTGSALIMPVLDNQLKSPSPLLLPARDAVTPLSETEAVDLVKDVFASATERDIYTGDKLEIVVINKAGTKREYIDLRKD 221
BLAST of CX047127 vs. ExPASy Swiss-Prot
Match: PSB9_MUSMB (Proteasome subunit beta type-9 OS=Mus musculus bactrianus GN=Psmb9 PE=1 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.478e-11 Identity = 46/182 (25.27%), Postives = 88/182 (48.35%), Query Frame = -3 Query: 222 IASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVFALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTE--IKERILKG 761 + SD R+ + F ++S +H R+F LSG A D+Q + ++ +L+ L E A++V + Y+ R ++AG + + ++G + + F ++G+ +YG +A +KP M P+E + A+ +++RD S GG +Y+VT T + R++ G Sbjct: 34 VGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYR-EDLLAHLIVAGWDQREGGQV--YGTMGGMLIRQPFTISGSGSSYIYGYVDAAYKPGMTPEECRRFTTNAITLAMNRDGSS--GGVIYLVTITAAGVDHRVILG 210
BLAST of CX047127 vs. ExPASy Swiss-Prot
Match: PB6LB_SALSA (Proteasome subunit beta type-6-B like protein OS=Salmo salar GN=psmb6l-b PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.478e-11 Identity = 42/181 (23.20%), Postives = 90/181 (49.72%), Query Frame = -3 Query: 222 IASDRRLGVQLQTIATD-FQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVFALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKG 761 I SD R + +++ ++ ++HDR+F ++G D+Q + + F+ + ++ E + AS++ L Y + + AG + P + T+ ++G L++ F + G+ +YG +A +KPDM +E + + AL ++ RD +SG H+ ++T ++ ++ G Sbjct: 30 IGSDSRASIGGSYVSSKTINKLIQVHDRIFCCIAGSLADAQAVTKAAKFQISFHSIQMESPPLVKAAASVLKELCYNNK-EELQAGFITAGWDRKKGPQVYTV-ALGGMLLSQPFTIGGSGSTYIYGYADAKYKPDMSKEECLQFATNALALAMGRDNVSGGVAHLVVITEEGVEHVVIPG 208
BLAST of CX047127 vs. ExPASy Swiss-Prot
Match: PSB9_MUSSI (Proteasome subunit beta type-9 OS=Mus spicilegus GN=Psmb9 PE=1 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 4.543e-11 Identity = 46/182 (25.27%), Postives = 87/182 (47.80%), Query Frame = -3 Query: 222 IASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVFALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTE--IKERILKG 761 + SD R+ + F ++S +H R+F LSG A D+Q + ++ +L+ L E A++V + Y+ R ++AG + + ++G + + F + G+ +YG +A +KP M P+E + A+ +++RD S GG +Y+VT T + R++ G Sbjct: 34 VGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYR-EDLLAHLIVAGWDQREGGQV--YGTMGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTNAITLAMNRDGSS--GGVIYLVTITAAGVDHRVILG 210 The following BLAST results are available for this feature:
BLAST of CX047127 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 34
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Sequences
The
following sequences are available for this feature:
EST sequence >CX047127 ID=CX047127; Name=CX047127; organism=Citrus sinensis; type=EST; length=784bpback to top |