CX047115

Overview
NameCX047115
Unique NameCX047115
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length866
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047115 vs. ExPASy Swiss-Prot
Match: RAB10_PONAB (Ras-related protein Rab-10 OS=Pongo abelii GN=RAB10 PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.543e-50
Identity = 99/189 (52.38%), Postives = 133/189 (70.37%), Query Frame = -2
Query:  302 IGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI-KNRMASQPASNNARPPTVQIRGQPVNQKSGCC 865
            IGDSGVGK+C+L RF+DD++  ++ISTIG+DFKI+TVE  GK IKLQIWDTAGQERF TIT+SYYRGA GI++VYD+T+ +SF N+ +WL  ID +A+E+V ++L+GNKCD+   +VV     +  A E GI F ETSAK+  N+E+AF+ +A  I +     +P S N     +   G     KS CC
Sbjct:   15 IGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRKTPVKEPNSENV---DISSGGGVTGWKSKCC 200          
BLAST of CX047115 vs. ExPASy Swiss-Prot
Match: RAB10_MOUSE (Ras-related protein Rab-10 OS=Mus musculus GN=Rab10 PE=1 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.543e-50
Identity = 99/189 (52.38%), Postives = 133/189 (70.37%), Query Frame = -2
Query:  302 IGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI-KNRMASQPASNNARPPTVQIRGQPVNQKSGCC 865
            IGDSGVGK+C+L RF+DD++  ++ISTIG+DFKI+TVE  GK IKLQIWDTAGQERF TIT+SYYRGA GI++VYD+T+ +SF N+ +WL  ID +A+E+V ++L+GNKCD+   +VV     +  A E GI F ETSAK+  N+E+AF+ +A  I +     +P S N     +   G     KS CC
Sbjct:   15 IGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRKTPVKEPNSENV---DISSGGGVTGWKSKCC 200          
BLAST of CX047115 vs. ExPASy Swiss-Prot
Match: RAB10_HUMAN (Ras-related protein Rab-10 OS=Homo sapiens GN=RAB10 PE=1 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.543e-50
Identity = 99/189 (52.38%), Postives = 133/189 (70.37%), Query Frame = -2
Query:  302 IGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI-KNRMASQPASNNARPPTVQIRGQPVNQKSGCC 865
            IGDSGVGK+C+L RF+DD++  ++ISTIG+DFKI+TVE  GK IKLQIWDTAGQERF TIT+SYYRGA GI++VYD+T+ +SF N+ +WL  ID +A+E+V ++L+GNKCD+   +VV     +  A E GI F ETSAK+  N+E+AF+ +A  I +     +P S N     +   G     KS CC
Sbjct:   15 IGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRKTPVKEPNSENV---DISSGGGVTGWKSKCC 200          
BLAST of CX047115 vs. ExPASy Swiss-Prot
Match: RABG2_DICDI (Ras-related protein RabG2 OS=Dictyostelium discoideum GN=rabG2 PE=3 SV=2)

HSP 1 Score: 199.134 bits (505), Expect = 2.632e-50
Identity = 97/167 (58.08%), Postives = 125/167 (74.85%), Query Frame = -2
Query:  368 IGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI-KNRMASQPAS 865
            IGDS VGK+ LLLRFAD+S+ E+ ++   VD+K + +  DG+T  LQIWDTAGQERFRTITSS+YRGAHG++V YDVTDQ ++NNV+ W+ EI RYA   V+++LVGNKCDL   K+V+   A+ +AD +GIPFME SA +  NVE+AFMAMA  I +N M     S
Sbjct:   12 IGDSAVGKTSLLLRFADNSFQETSVNMTSVDYKNKNIVIDGRTFNLQIWDTAGQERFRTITSSFYRGAHGVLVCYDVTDQLTYNNVRLWMQEIQRYAVLGVSRVLVGNKCDLEDRKLVNTSIAREYADSLGIPFMEASAATGVNVEEAFMAMANEIYRNHMGGSKPS 178          
BLAST of CX047115 vs. ExPASy Swiss-Prot
Match: RAB10_CANFA (Ras-related protein Rab-10 OS=Canis familiaris GN=RAB10 PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 3.438e-50
Identity = 99/189 (52.38%), Postives = 132/189 (69.84%), Query Frame = -2
Query:  302 IGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI-KNRMASQPASNNARPPTVQIRGQPVNQKSGCC 865
            IGDSGVGK+C+L RF+DD++  ++ISTIG+DFKI+TVE  GK IKLQIWDTAGQERF TIT+SYYRGA GI++VYD+T+ +SF N+ +WL  ID +A+E+V ++L+GNKCD+   +VV     +  A E GI F ETSAK   N+E+AF+ +A  I +     +P S N     +   G     KS CC
Sbjct:   15 IGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKVNINIEKAFLTLAEDILRKTPVKEPNSENV---DISSGGGVTGWKSKCC 200          
BLAST of CX047115 vs. ExPASy Swiss-Prot
Match: RAB10_CHICK (Ras-related protein Rab-10 OS=Gallus gallus GN=RAB10 PE=2 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 4.490e-50
Identity = 98/189 (51.85%), Postives = 132/189 (69.84%), Query Frame = -2
Query:  302 IGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI-KNRMASQPASNNARPPTVQIRGQPVNQKSGCC 865
            IGDSGVGK+C+L RF+DD++  ++ISTIG+D KI+TVE  GK IKLQIWDTAGQERF TIT+SYYRGA GI++VYD+T+ +SF N+ +WL  ID +A+E+V ++L+GNKCD+   +VV     +  A E GI F ETSAK+  N+E+AF+ +A  I +     +P S N     +   G     KS CC
Sbjct:   15 IGDSGVGKTCVLFRFSDDAFNTTFISTIGIDLKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNAKSFENISKWLRNIDEHANEDVERMLLGNKCDMEDKRVVPKAKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRKTPVKEPNSENV---DISSGGGVTGWKSKCC 200          
BLAST of CX047115 vs. ExPASy Swiss-Prot
Match: SEC4_YEAST (Ras-related protein SEC4 OS=Saccharomyces cerevisiae GN=SEC4 PE=1 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 7.659e-50
Identity = 97/191 (50.79%), Postives = 136/191 (71.20%), Query Frame = -2
Query:  302 IGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQP--ASNNARPPTVQIR-GQPVNQKSGCC 865
            IGDSGVGKSCLL+RF +D +  S+I+TIG+DFKI+TV+ +GK +KLQ+WDTAGQERFRTIT++YYRGA GII+VYDVTD+ +F N+KQW   ++ +A++    LLVGNK D+   +VV+ +  +A A E+GIPF+E+SAK+  NV + F  +A  I+ ++ S       N +   + I  G   + KS CC
Sbjct:   26 IGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDSNKLVGVGNGKEGNISINSGSGNSSKSNCC 215          
BLAST of CX047115 vs. ExPASy Swiss-Prot
Match: SEC4_CANAL (Ras-related protein SEC4 OS=Candida albicans GN=SEC4 PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 8.468e-49
Identity = 89/159 (55.97%), Postives = 119/159 (74.84%), Query Frame = -2
Query:  389 IGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 865
            +GDSGVGKSCLLLRF +D +  S+I+TIG+DFKIRT+E  GK IKLQ+WDTAGQERFRTIT++YYRGA GI+++YDVTD  SF NV+ W   + ++A+E+    LVGNKCD   N+ VS E  +  A ++ +PF+E SAKS  NV+  F  +A+ I+ +
Sbjct:   20 VGDSGVGKSCLLLRFVEDKFNPSFITTIGIDFKIRTIESKGKRIKLQVWDTAGQERFRTITTAYYRGAMGIVLIYDVTDSRSFENVENWFQTVTQHANEDAQIFLVGNKCDDEVNRQVSKEQGQELAAKLNVPFLEASAKSNENVDSIFYELASIIQEK 178          
BLAST of CX047115 vs. ExPASy Swiss-Prot
Match: RAB10_DISOM (Ras-related protein Rab-10 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.887e-48
Identity = 90/156 (57.69%), Postives = 121/156 (77.56%), Query Frame = -2
Query:  398 IGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 865
            IGDSGVGK+C+L RF+DD++  ++ISTIG+DFKI+TVE  GK IKLQIWDTAGQERF TIT+SYYRGA GI++VYD+T+ +SF N+ +WL  ID +A+E+V ++L+GNKCD+   +VV     +  A E  I F ETSAK+  N+E+AF+ +A  I
Sbjct:   15 IGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELHGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNAKSFENISKWLRNIDEHANEDVERMLLGNKCDMEDKRVVLKSKGEQIAREHAIRFFETSAKANINIEKAFLTLAEDI 170          
BLAST of CX047115 vs. ExPASy Swiss-Prot
Match: RAB35_RAT (Ras-related protein Rab-35 OS=Rattus norvegicus GN=Rab35 PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 1.223e-47
Identity = 101/167 (60.48%), Postives = 125/167 (74.85%), Query Frame = -2
Query:  377 IGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI----KNRMASQ 865
            IGDSGVGKS LLLRFAD+++  SYI+TIGVDFKIRTVE +G+ +KLQIWDTAGQERFRTITS+YYRG HG+IVVYDVT  ESF NVK+WL+EI++   ++V ++LVGNK D    KVV  E A  FA ++GI   ETSAK   NVE+ F  +   +    K+ +A Q
Sbjct:   14 IGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC-DDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDNLAKQ 179          
The following BLAST results are available for this feature:
BLAST of CX047115 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB10_PONAB1.543e-5052.38Ras-related protein Rab-10 OS=Pongo abelii GN=RAB1... [more]
RAB10_MOUSE1.543e-5052.38Ras-related protein Rab-10 OS=Mus musculus GN=Rab1... [more]
RAB10_HUMAN1.543e-5052.38Ras-related protein Rab-10 OS=Homo sapiens GN=RAB1... [more]
RABG2_DICDI2.632e-5058.08Ras-related protein RabG2 OS=Dictyostelium discoid... [more]
RAB10_CANFA3.438e-5052.38Ras-related protein Rab-10 OS=Canis familiaris GN=... [more]
RAB10_CHICK4.490e-5051.85Ras-related protein Rab-10 OS=Gallus gallus GN=RAB... [more]
SEC4_YEAST7.659e-5050.79Ras-related protein SEC4 OS=Saccharomyces cerevisi... [more]
SEC4_CANAL8.468e-4955.97Ras-related protein SEC4 OS=Candida albicans GN=SE... [more]
RAB10_DISOM1.887e-4857.69Ras-related protein Rab-10 OS=Discopyge ommata PE=... [more]
RAB35_RAT1.223e-4760.48Ras-related protein Rab-35 OS=Rattus norvegicus GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_12B12_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12B12-C23-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047115 ID=CX047115; Name=CX047115; organism=Citrus sinensis; type=EST; length=866bp
TTTGAGGAGAACAATTGATATATTAGCTACATCGATGACGAACAATATAA
AGAATAGAGGACAGCAAGAAAGATGCCGCTATTCACCAATATTCCTAATT
TGTACAAATGTTTTCTTGAAACCCAATACATTTGAAAAGAATGGAAACTT
TAGTAAAGTAACGAACAACTGACAAGAAAAGCAAATCATGACAATAAACC
TTCATATCAAAGCATATAAGAAGAGAGAACTAGTGTTACATTCCACAAAG
AACATTGATAAACATCAGAAATTCACCAACACTAATTCCCTTCTAAGTGG
AGCAGCAACCAGATTTCTGGTTGACAGGCTGTCCTCGGATCTGCACTGTT
GGCGGCCTAGCATTGTTCGACGCAGGTTGGCTTGCCATCCTATTCTTGAT
TGAAGCAGCCATGGCCATGAAAGCCTGTTCGACGTTGGTGGCACTTTTAG
CACTTGTTTCCATGAAAGGAATCCCAATTTCATCCGCAAATGCCTTGGCT
GTCTCATAGGACACAACTTTGTTCGCTGTGAGATCACACTTGTTACCAAC
TAAAAGCTTGTTCACATTTTCACTTGCATATCGGTCAATTTCATTCAACC
ATTGCTTTACATTGTTGAAGCTCTCTTGATCTGTGACATCATAAACAACA
ATGATGCCATGAGCCCCACGATAGTAGCTGCTGGTTATTGTCCTAAAACG
CTCTTGGCCAGCAGTGTCCCAAATTTGGAGCTTAATGGTTTTGCCATCTT
GTTCCACAGTGCGGATTTTAAAGTCAACTCCAATGGTGCTAATGTAGCTT
TCCAGATAAGAATCATCAGCAAACCTCAAAAGTAGACACGATTTGCCAAC
ACCAGAATCGCCTATG
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