CX047101

Overview
NameCX047101
Unique NameCX047101
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length917
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047101 vs. ExPASy Swiss-Prot
Match: RR8_LEPVR (30S ribosomal protein S8, chloroplastic OS=Lepidium virginicum GN=rps8 PE=3 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 3.651e-53
Identity = 107/136 (78.68%), Postives = 119/136 (87.50%), Query Frame = -3
Query:   70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477
            MGKDTIADIITSIRNADMNRKGTVRI STNITE++VKILLREGFIEN RK    +N + FL+LTLRH+RN+K  Y+ ILNLKRISRPGLRIY N +RIPRIL G+GIVILSTS+GIMTDR AR + IGGEILCYIW
Sbjct:    1 MGKDTIADIITSIRNADMNRKGTVRIRSTNITESIVKILLREGFIENVRK--HRENNQYFLILTLRHKRNKKESYKTILNLKRISRPGLRIYSNSQRIPRILGGIGIVILSTSQGIMTDREARRKSIGGEILCYIW 134          
BLAST of CX047101 vs. ExPASy Swiss-Prot
Match: RR8_DRANE (30S ribosomal protein S8, chloroplastic OS=Draba nemorosa GN=rps8 PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 4.768e-53
Identity = 107/136 (78.68%), Postives = 119/136 (87.50%), Query Frame = -3
Query:   70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477
            MGKDTIADIITSIRNADMNRKG VRI STNITE++VKILLREGF+EN RK  EN +   FL+LTLRHRRN+K  Y+  LNLKRISRPGLRIY N +RIPRIL G+GIVILSTS+GIMTDR ARL++IGGEILCYIW
Sbjct:    1 MGKDTIADIITSIRNADMNRKGMVRIESTNITESIVKILLREGFVENVRKHRENNHY--FLILTLRHRRNKKESYKTFLNLKRISRPGLRIYSNSQRIPRILGGIGIVILSTSQGIMTDREARLKKIGGEILCYIW 134          
BLAST of CX047101 vs. ExPASy Swiss-Prot
Match: RR8_CHLSC (30S ribosomal protein S8, chloroplastic OS=Chloranthus spicatus GN=rps8 PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 6.227e-53
Identity = 113/138 (81.88%), Postives = 119/138 (86.23%), Query Frame = -3
Query:   70 MGKDTIADIITSIRNADMNRKGTVRIASTNI--TENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477
            MGKDTIADIITSIRNADM +KGTVRIASTNI  +EN+V+ILLREGFIEN RK    +N K FLV TLRHRRNRKG YR IL  KRISRPGLRIY NY+RIPRIL GMGIVILSTSRGIMTDR ARLE IGGEILCYIW
Sbjct:    1 MGKDTIADIITSIRNADMEKKGTVRIASTNINISENIVQILLREGFIENVRK--HRENNKYFLVSTLRHRRNRKGAYRNIL--KRISRPGLRIYSNYQRIPRILGGMGIVILSTSRGIMTDREARLEGIGGEILCYIW 134          
BLAST of CX047101 vs. ExPASy Swiss-Prot
Match: RR8_DRIGR (30S ribosomal protein S8, chloroplastic OS=Drimys granadensis GN=rps8 PE=3 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 8.133e-53
Identity = 109/136 (80.15%), Postives = 118/136 (86.76%), Query Frame = -3
Query:   70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477
            M KDTIADIITSIRNADM++KGTVRIASTNITEN++KILLREGFIEN RK    +N K  L+LTLRHRRNRKG YR IL  K ISRPGLRIY NY+RIPRIL G+GIVILSTSRGIMTDR ARL+ IGGEILCYIW
Sbjct:    1 MSKDTIADIITSIRNADMDKKGTVRIASTNITENIIKILLREGFIENVRK--HRENNKYLLILTLRHRRNRKGTYRNIL--KCISRPGLRIYSNYKRIPRILGGIGIVILSTSRGIMTDREARLKGIGGEILCYIW 132          
BLAST of CX047101 vs. ExPASy Swiss-Prot
Match: RR8_ILLOL (30S ribosomal protein S8, chloroplastic OS=Illicium oligandrum GN=rps8 PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.812e-52
Identity = 110/136 (80.88%), Postives = 116/136 (85.29%), Query Frame = -3
Query:   70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477
            MG+DTIADIITSIRNADM  KG VRIASTNITEN+VKILLREGFIEN RK    ++ K FLV TLRHRRNRKG YR IL  KRISRPGLRIY NY+ IPRIL GMG+VILSTSRGIMTDR ARLE IGGEILCYIW
Sbjct:    1 MGRDTIADIITSIRNADMGTKGMVRIASTNITENIVKILLREGFIENVRK--HRESNKYFLVSTLRHRRNRKGTYRNIL--KRISRPGLRIYSNYQGIPRILGGMGVVILSTSRGIMTDREARLEGIGGEILCYIW 132          
BLAST of CX047101 vs. ExPASy Swiss-Prot
Match: RR8_MORIN (30S ribosomal protein S8, chloroplastic OS=Morus indica GN=rps8 PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 4.036e-52
Identity = 109/138 (78.99%), Postives = 118/138 (85.51%), Query Frame = -3
Query:   70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRR--NRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477
            M KDTIA+I+TSIRNADMN+K TVRI  TNITEN++KILLREGFIEN RK  E+ N   F VLTLRHRR  NRKGP + +LNLKRISRPGLRIY NY+RIPRIL GMGIVILSTSRGIMTDR ARLE IGGEILCYIW
Sbjct:    1 MSKDTIANILTSIRNADMNKKRTVRIPYTNITENILKILLREGFIENMRKHQESNNL--FFVLTLRHRRKRNRKGPDKTVLNLKRISRPGLRIYSNYQRIPRILGGMGIVILSTSRGIMTDREARLEGIGGEILCYIW 136          
BLAST of CX047101 vs. ExPASy Swiss-Prot
Match: RR8_PHAVU (30S ribosomal protein S8, chloroplastic OS=Phaseolus vulgaris GN=rps8 PE=3 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 6.885e-52
Identity = 102/136 (75.00%), Postives = 117/136 (86.03%), Query Frame = -3
Query:   70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477
            MGKDTIA+IIT IRNAD+N+KG V++  TNITE +VKILLREGF+EN RK    +N K FLVLTLR+RRNRK  Y+  LNLKRIS PGLRIY+NY++IPRIL GMGIVILSTSRGIMTDR ARLE+IGGE+LCYIW
Sbjct:    1 MGKDTIANIITYIRNADINKKGMVQLPFTNITEKIVKILLREGFVENIRK--HRENDKSFLVLTLRYRRNRKESYKSFLNLKRISTPGLRIYYNYKKIPRILGGMGIVILSTSRGIMTDREARLEKIGGEVLCYIW 134          
BLAST of CX047101 vs. ExPASy Swiss-Prot
Match: RR8_DIOEL (30S ribosomal protein S8, chloroplastic OS=Dioscorea elephantipes GN=rps8 PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.534e-51
Identity = 106/136 (77.94%), Postives = 120/136 (88.24%), Query Frame = -3
Query:   70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477
            MG+DTIA+IITSIRNADM++KGTVRIASTNITEN+VKILLREGFIEN RK    +N++ FLV TLRHRR  KG YR IL  KRISRPGLRIY NY+RIP+IL G+GIVILSTS+GIMTDR ARL++IGGEILCYIW
Sbjct:    1 MGRDTIANIITSIRNADMDKKGTVRIASTNITENIVKILLREGFIENVRK--HQENQRFFLVSTLRHRRTSKGVYRTIL--KRISRPGLRIYSNYQRIPKILGGIGIVILSTSQGIMTDREARLKKIGGEILCYIW 132          
BLAST of CX047101 vs. ExPASy Swiss-Prot
Match: RR8_PLAOC (30S ribosomal protein S8, chloroplastic OS=Platanus occidentalis GN=rps8 PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 2.616e-51
Identity = 106/136 (77.94%), Postives = 116/136 (85.29%), Query Frame = -3
Query:   70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477
            MG+DTIADIITSIRNADM++KG VRI  TNI EN++KILLREGFIEN RK    ++ K FLV TLRHRRNRK PY+ IL  KRISRPGLRIY NY+RIPRIL G+GIVILSTSRGIMTDR ARLE IGGEILCYIW
Sbjct:    1 MGRDTIADIITSIRNADMDKKGRVRIGYTNIAENIIKILLREGFIENVRK--HRESNKYFLVSTLRHRRNRKRPYKTIL--KRISRPGLRIYSNYQRIPRILGGIGIVILSTSRGIMTDREARLEGIGGEILCYIW 132          
BLAST of CX047101 vs. ExPASy Swiss-Prot
Match: RR8_NYMAL (30S ribosomal protein S8, chloroplastic OS=Nymphaea alba GN=rps8 PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 2.616e-51
Identity = 108/136 (79.41%), Postives = 117/136 (86.03%), Query Frame = -3
Query:   70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477
            MG+DTIADIIT IRNADM++KGTVRI STNITEN+VKILLREGFIEN RK    +N K+FLVLTLRHRRNRK  YR IL  KRISRPGLRIY N +RIPRI  G+G+VILSTSRGIMTDR ARLERIGGEIL YIW
Sbjct:    1 MGRDTIADIITYIRNADMDKKGTVRIPSTNITENIVKILLREGFIENVRK--HRENNKDFLVLTLRHRRNRKRAYRNIL--KRISRPGLRIYSNSQRIPRISGGIGVVILSTSRGIMTDREARLERIGGEILFYIW 132          
The following BLAST results are available for this feature:
BLAST of CX047101 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR8_LEPVR3.651e-5378.6830S ribosomal protein S8, chloroplastic OS=Lepidiu... [more]
RR8_DRANE4.768e-5378.6830S ribosomal protein S8, chloroplastic OS=Draba n... [more]
RR8_CHLSC6.227e-5381.8830S ribosomal protein S8, chloroplastic OS=Chloran... [more]
RR8_DRIGR8.133e-5380.1530S ribosomal protein S8, chloroplastic OS=Drimys ... [more]
RR8_ILLOL1.812e-5280.8830S ribosomal protein S8, chloroplastic OS=Illiciu... [more]
RR8_MORIN4.036e-5278.9930S ribosomal protein S8, chloroplastic OS=Morus i... [more]
RR8_PHAVU6.885e-5275.0030S ribosomal protein S8, chloroplastic OS=Phaseol... [more]
RR8_DIOEL1.534e-5177.9430S ribosomal protein S8, chloroplastic OS=Dioscor... [more]
RR8_PLAOC2.616e-5177.9430S ribosomal protein S8, chloroplastic OS=Platanu... [more]
RR8_NYMAL2.616e-5179.4130S ribosomal protein S8, chloroplastic OS=Nymphae... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_12B05_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12B05-C9-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047101 ID=CX047101; Name=CX047101; organism=Citrus sinensis; type=EST; length=917bp
AATCCTCCCTTTTTTTTTCTCACAACATAAAAGTAAGCTCCAAATACAAT
TCGGATAGCAGAATAATTACCATATATAACACAAAATTTCTCCACCGATT
CTTTCCAGTCGAGCCGCTCGGTCTGTCATTATACCCCGAGAAGTAGAGAG
AATTACAATCCCCATCCCATCTAAAATTCTAGGAATTCGTCGATAGTTAA
AATAGATTCGTAGACCGGGTCGACTGATTCGTTTTAAATTTAAAATGGGT
CTATACGGCCCTTTCCTATTCCTTCGATGTCGTAGGGTTAAAACCAAAAA
CTCTTTTTTGTTTTTGTTTTCCACGAGTTTCCTTGCGTTTTCGATAAAAC
CCTCTCGCAAAAGGATTTTAACAACGTTTTCGGTGATGTTAGTAGATGCT
ATTCGAACCGTTCCCTTTCTATTCATGTCAGCATTTCGTATAGAAGTTAT
TATGTCAGCAATAGTGTCCTTGCCCATGATAAACTGAAAATTTTGTTGCT
TCCAAATTTTGATATAATCAACATGTTCTTTTTTTTATGAAAATTATTAA
AAGTATATGCGTGAGACATACTCTACTAAATTTTGATTTATCTATTTTAT
TTTCATACTATCACTATATCGCGGTCCCCTCTTATAATACTTCAGGTGCT
AATGAAACTATTTTAGTAAAATTCAACTGTCTCAATTCCCGGGCGATCGC
ACCAAAAACTCGAGTTCCCTTTGGATTTCCTTCGTGATCAATGACAACTG
CAGCATTGTCATCGTACCGTATTATCATACCGTTATCACGTCTGAGTTCT
TTACAAGTACGTACAATTACAGCTCTGATCACTTCTGATCTTTCTAGAGG
CGTATTGGGTACTGCTTCCTTGATCACAGCAACAATAACGTCACCAATAT
GAGCATATCTACGATTA
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