CX047098

Overview
NameCX047098
Unique NameCX047098
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length839
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX047098 vs. ExPASy Swiss-Prot
Match: GDL43_ARATH (GDSL esterase/lipase At2g31540 OS=Arabidopsis thaliana GN=At2g31540 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.764e-11
Identity = 71/275 (25.82%), Postives = 112/275 (40.73%), Query Frame = 1 
Query:   28 LIFVLLPSLFSALTAATNTLTPRPFNKIYAFGDSFTDTGNTKTATGPSGFGHVSTSPYGSTYFHHPTN-RYSDGRLVIDFVTQSLSL-----PFLPPYLHNKDNATYGVNFAVGGATAINHAFFVKNNLSLDITPQSIQTQLIWFNKFL-ESKGCKAAESSVPQCQAAFDDALFWVGEIGVNDYAYTLGSSVTSDTIRKLAIPSFTNFLQALLKRGAKYVVVQGLPTTGCLPLAMYLAPEDDRDGIGCVKSVNNQSYTHNLVLQAQLQNLRQQFP 831
            L   +  +L +   AA N  T   F  I  FGDS  DTGN      P+ F      PYG        N R+S+G+L+ D +   L++     PFL P L ++D  T GV FA  GA   +        + +   P   ++ +      + + K  +   ++     A  +D +    EI      Y   S      +++L      NF++ L   G + V+V GLP  GCLP+  ++  +       C++  N  S  +N  LQ  L  +    P
Sbjct:    9 LTLFIATTLLAPCNAAANATTKPLFPAILIFGDSTVDTGNNNYPL-PTIF-RAEHFPYGMDLPDGKANGRFSNGKLISDIIATKLNIKEFIPPFLQPNLSDQDILT-GVCFASAGAGYDDLTSLSTQAIRVSEQPNMFKSYIARLKGIVGDKKAMEIINNAFVVVSAGPNDFILNYYEIPSRRLEYPFISGYQDFILKRLE-----NFVRELYSLGVRNVLVGGLPPMGCLPI--HMTAKFRNIFRFCLEHHNKDSVLYNEKLQNLLPQIEASLP 273
The following BLAST results are available for this feature:
BLAST of CX047098 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
GDL43_ARATH8.764e-1125.82GDSL esterase/lipase At2g31540 OS=Arabidopsis thal... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_12B04_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12B04-C7-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047098 ID=CX047098; Name=CX047098; organism=Citrus sinensis; type=EST; length=839bp
TTCGGAGTTTTTTCCTCCCAAACTTTCCTCATCTTCGTACTCTTACCCTC
CCTGTTTTCTGCCCTTACTGCTGCAACCAACACATTAACCCCACGTCCAT
TTAATAAGATCTATGCCTTCGGTGACTCATTCACCGACACTGGTAACACA
AAGACTGCGACTGGCCCTAGTGGCTTTGGCCATGTCTCCACCTCTCCATA
CGGCAGCACATATTTCCACCACCCGACCAACCGATACTCCGATGGGCGGC
TGGTGATTGACTTTGTAACTCAATCCCTGTCACTACCATTCTTGCCACCT
TACCTTCACAACAAAGATAATGCAACATATGGTGTCAACTTTGCTGTTGG
CGGTGCCACTGCTATAAATCATGCTTTCTTTGTCAAAAACAATCTCAGTC
TTGACATTACTCCTCAGTCAATCCAAACTCAGCTCATTTGGTTCAACAAG
TTCTTGGAGAGCAAGGGATGTAAAGCAGCAGAGTCCTCAGTGCCTCAGTG
CCAGGCAGCTTTCGATGATGCATTGTTCTGGGTTGGTGAAATTGGAGTCA
ACGATTATGCATACACTCTAGGATCTTCTGTTACAAGTGACACTATCCGA
AAACTCGCTATCCCTAGTTTTACAAATTTTCTGCAGGCGTTGCTTAAAAG
AGGAGCAAAATATGTTGTTGTTCAAGGTCTGCCGACAACAGGATGCTTGC
CGCTGGCAATGTATTTGGCTCCTGAAGACGATAGAGACGGTATAGGCTGT
GTAAAAAGTGTGAACAATCAAAGCTACACCCATAACCTTGTTCTTCAAGC
CCAATTACAGAATCTTAGACAGCAGTTTCCCCAGGCTGT
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