CX047086

Overview
NameCX047086
Unique NameCX047086
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length842
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047086 vs. ExPASy Swiss-Prot
Match: GPMI_SILST (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Silicibacter sp. (strain TM1040) GN=gpmI PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.360e-32
Identity = 89/226 (39.38%), Postives = 127/226 (56.19%), Query Frame = 3
Query:  123 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFN-YIKPSFET-GTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVK 794
            V + +LDGWG  +P   N  ++A TPT+D+  +S P   RLV  HG  VGLP+   MGNSEVGH  +GAGR+ A     +DLA+  G  Y ++    +I    ET G  HL+GL+SDGGVH  +  +   +K   + G   + LH +TDGRDV   S++ +++ +E  +A        AQIA+  GR Y  MDR +N W+ V   +DA V G       +A +AV+
Sbjct:    7 VVLCILDGWGSAEPGPANAPYLAKTPTLDAIMQSCPTA-RLV-THGPDVGLPS-GQMGNSEVGHTNIGAGRVVAMDLGQIDLAIEDGSFYDNDALQAFIAKLKETGGAAHLMGLVSDGGVHGHVTHILAAIKAIRDAGVP-VWLHAITDGRDVAPKSALTYLDQLEAGMAP------GAQIATVTGR-YFAMDR-DNRWERVSEAYDAMVKGAGQFTAATARDAVE 220          
BLAST of CX047086 vs. ExPASy Swiss-Prot
Match: GPMI_LISIN (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Listeria innocua GN=gpmI PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.360e-32
Identity = 89/241 (36.93%), Postives = 134/241 (55.60%), Query Frame = 3
Query:  123 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFN--YIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPP 839
            VA+++LDG+G+      N +  A+ P  D +  + P     ++A G  VGLP E  MGNSEVGH  +GAGRI  Q    +D A+  G+  +++  N  +         LHL GLLSDGGVHS ++ L  LL+ A ++G K + +H   DGRDV   SS+ ++ET+EK +++L        IA+  GR Y  MDR +  W+ V++ + A V  E   KF+  +E VK      + ND+++ P
Sbjct:    6 VAIIILDGFGKRAETVGNAVAQANKPNFDRYWANFPHGE--LKAAGLDVGLP-EGQMGNSEVGHTNIGAGRIVYQSLTRIDKAIEEGEFQENKALNNAFTHTKENNSDLHLFGLLSDGGVHSHINHLVALLETAKDKGVKNVYIHAFLDGRDVAPQSSLEYLETLEKAISDLN----YGAIATVSGRFY-AMDR-DKRWERVEKAYKAIVSAEG-EKFEDPIELVKASYAN-DKNDEFVVP 235          
BLAST of CX047086 vs. ExPASy Swiss-Prot
Match: GPMI_CELJU (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Cellvibrio japonicus (strain Ueda107) GN=gpmI PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.360e-32
Identity = 90/247 (36.44%), Postives = 136/247 (55.06%), Query Frame = 3
Query:  105 LSRNNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFET----GTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYL 833
            +S    V +++LDG+G  +  KYN ++ A TP  D+  K+ P    L+   G AVGLP    MGNSEVGH  +GAGR+  Q    ++ +++ G  + +    Y+K           +H++GLLS+GGVHS  D L  ++  A ERGAK++ LH   DGRD    S+   ++  +   A+L G G   ++AS  GR Y  +DR +N WD VK  +D  V GEA     +AV+ +K   E+   ND+++
Sbjct:    1 MSAKKPVVLLILDGYGYSERTKYNAVYAAQTPVYDNLWKTCPNT--LIDTSGMAVGLPA-GQMGNSEVGHTTIGAGRVVYQSFTRINKSISDGDFFTNP--EYVKAIDSAIANDRAVHILGLLSEGGVHSHQDHLYAMINMAVERGAKQVYLHAFLDGRDTPPRSAEASLQKAQDVFAKL-GTG---RVASIVGR-YFALDR-DNRWDRVKTAYDVMVTGEAEFDALTAVDGLKAAYER-GENDEFV 235          
BLAST of CX047086 vs. ExPASy Swiss-Prot
Match: GPMI_METMA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Methanosarcina mazei GN=gpmI PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.867e-32
Identity = 86/241 (35.68%), Postives = 136/241 (56.43%), Query Frame = 3
Query:  129 VVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQD----EGFNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPP 839
            +++LDGWG  +  + N I  A TP +D  +K  P  +  +   G AVGLP +  MGNSEVGH  +GAGR+  Q    +++++ +G  +++    +  + +K      +LHL+GL+S GGVHS +  L  L+K A E+G K++ +H+  DGRDV   +++G V    K+L     +    +IA+  GR Y  MDR +  W+  K  +DA  LG AP+K   AV AV +  E+    D+++ P
Sbjct:   16 LMILDGWGYREEKEGNAILAASTPHLDRLQKERPSCF--LETSGEAVGLP-QGQMGNSEVGHLNIGAGRVVYQDLTKINVSIRNGDFFENPVLLDAISNVK--LNNSSLHLMGLVSYGGVHSHMTHLYALIKLAQEKGLKKVYIHVFLDGRDVPPKAALGDV----KELDAFCKENQSVKIATVQGR-YYAMDR-DKRWERTKLAYDALTLGVAPYKTSDAVTAVSEAYER-GETDEFIKP 244          
BLAST of CX047086 vs. ExPASy Swiss-Prot
Match: GPMI_LISW6 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=gpmI PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.867e-32
Identity = 88/241 (36.51%), Postives = 133/241 (55.19%), Query Frame = 3
Query:  123 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFN--YIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPP 839
            VA+++LDG+G+      N +  A+ P  D +    P     ++A G  VGLP E  MGNSEVGH  +GAGRI  Q    +D A+  G+  +++  N  +         LHL GLLSDGGVHS ++ L  LL+ A ++G K + +H   DGRDV   SS+ ++ET++K + +L       +IA+  GR Y  MDR +  W+ V++ + A V  E   KF+  +E VK      + ND+++ P
Sbjct:    6 VAIIILDGFGKRAETVGNAVAQANKPNFDRYWADFPHGE--LKAAGLDVGLP-EGQMGNSEVGHTNIGAGRIVYQSLTRIDKAIEEGEFQENKALNNAFTHTKENNSDLHLFGLLSDGGVHSHINHLVALLETAKDKGVKNVYIHAFLDGRDVAPQSSLEYLETLQKAMNDLN----YGEIATVSGRFY-AMDR-DKRWERVEKAYKAIVSAEG-EKFEDPIELVKASYAN-DKNDEFVVP 235          
BLAST of CX047086 vs. ExPASy Swiss-Prot
Match: GPMI_LISMO (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Listeria monocytogenes GN=gpmI PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.867e-32
Identity = 88/241 (36.51%), Postives = 133/241 (55.19%), Query Frame = 3
Query:  123 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFN--YIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPP 839
            VA+++LDG+G+      N +  A+ P  D +    P     ++A G  VGLP E  MGNSEVGH  +GAGRI  Q    +D A+  G+  +++  N  +         LHL GLLSDGGVHS ++ L  LL+ A ++G K + +H   DGRDV   SS+ ++ET++K +++L        IA+  GR Y  MDR +  W+ V++ + A V  E   KF+  +E VK      + ND+++ P
Sbjct:    6 VAIIILDGFGKRAETVGNAVAQANKPNFDRYWADFPHGE--LKAAGLDVGLP-EGQMGNSEVGHTNIGAGRIVYQSLTRIDKAIEEGEFQENKALNNAFTHTKENNSDLHLFGLLSDGGVHSHINHLVALLETAKDKGVKNVYIHAFLDGRDVAPQSSLEYLETLQKAISDLN----YGAIATVSGRFY-AMDR-DKRWERVEKAYKAIVSAEG-EKFEDPIELVKASYAN-DKNDEFVVP 235          
BLAST of CX047086 vs. ExPASy Swiss-Prot
Match: GPMI_LISMF (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Listeria monocytogenes serotype 4b (strain F2365) GN=gpmI PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.867e-32
Identity = 88/241 (36.51%), Postives = 134/241 (55.60%), Query Frame = 3
Query:  123 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFN--YIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPP 839
            VA+++LDG+G+      N +  A+ P  D +  + P     ++A G  VGLP E  MGNSEVGH  +GAGRI  Q    +D A+  G+  +++  N  +         LHL GLLSDGGVHS ++ L  LL+ A ++G K + +H   DGRDV   SS+ ++ET++K +++L        IA+  GR Y  MDR +  W+ V++ + A V  E   KF+  +E VK      + ND+++ P
Sbjct:    6 VAIIILDGFGKRAETVGNAVAQANKPNFDRYWANFPHGE--LKAAGLDVGLP-EGQMGNSEVGHTNIGAGRIVYQSLTRIDKAIEEGEFQENKALNNAFTHTKENNSDLHLFGLLSDGGVHSHINHLVALLETAKDKGVKNVYIHAFLDGRDVAPQSSLEYLETLQKAISDLN----YGAIATVSGRFY-AMDR-DKRWERVEKAYKAIVNAEG-EKFEDPIELVKASYAN-DKNDEFVVP 235          
BLAST of CX047086 vs. ExPASy Swiss-Prot
Match: GPMI_NATPD (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=gpmI PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.530e-31
Identity = 93/240 (38.75%), Postives = 129/240 (53.75%), Query Frame = 3
Query:  126 AVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFN--YIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPP 839
            A+V+LDGWG    D+ + +  ADTP  D+  +        +  HG +VGLP +  MGNSEVGH  +GAGR+  Q +  V   + +G    +E     +       G +H +GL+SDGGVHS    L  L+  A+ERG + +  H  TDGRD    S VGF+E    DLA    +     +A+  GR Y  MDR EN W+  KR +DA V  EAPH+  SAV AV    ++ +  D+Y+ P
Sbjct:    4 ALVILDGWGLGDGDETDAVAAADTPAFDALAERGATGQ--LETHGRSVGLP-DGQMGNSEVGHLNIGAGRVVKQDSTRVTDDIDAGVFADNEALARAFDHADDHDGRVHFMGLVSDGGVHSYQSHLHALVDLAAERGVEAV-THAFTDGRDTAPKSGVGFIE----DLAATVEEAGTGDVATVCGR-YYAMDRDEN-WERTKRAYDAIVHREAPHEADSAVAAVAASYDRGD-TDEYVEP 232          
BLAST of CX047086 vs. ExPASy Swiss-Prot
Match: GPMI_HALOH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=gpmI PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.408e-31
Identity = 91/248 (36.69%), Postives = 144/248 (58.06%), Query Frame = 3
Query:  105 LSRNNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFN----YIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLP 836
            ++R   +A++++DG+G  +    N I  A TP +D F +  P+   ++ A G AVGLP E  MGNSEVGH  LGAGRI  Q    ++ A+  G + +++       ++K +     LHL+GLLSDGGVHS ++ L  LL+ A  +  +++ +H + DGRD    S+  ++  +E+ LAEL   G+  +IA+  GR Y TMDR +N WD  K+ +DA VLGE   +   A+ A+K+      +++  +P
Sbjct:    1 MNRPKPLALIIMDGFGLSEKSDGNAIKQAHTPNLDKFFEEYPDT--VLDASGEAVGLP-EGQMGNSEVGHLNLGAGRIVYQDYTRINKAIEEGTLPENDALKNAIQHVKDN--NSALHLMGLLSDGGVHSHINHLFGLLEMARVKNIEKVYVHPILDGRDTPPRSAEKYLNQLEEKLAEL---GI-GEIATVSGR-YYTMDR-DNRWDRTKKSYDALVLGEG-LEASDAISALKQSYAADKSDEFVIP 236          
BLAST of CX047086 vs. ExPASy Swiss-Prot
Match: GPMI1_METAC (2,3-bisphosphoglycerate-independent phosphoglycerate mutase 1 OS=Methanosarcina acetivorans GN=gpmI1 PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.408e-31
Identity = 89/239 (37.24%), Postives = 134/239 (56.07%), Query Frame = 3
Query:  129 VVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYI-KPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPP 839
            +++LDGWG  + ++ N +  A TP +D   K  P  W L+ A G AVGLP E  MGNSE GH  +GAGRI  Q    +++++ +G  +++  F N I K      +LHLIGL+S GGVHS    L  L+K A E+G K++ +H   DGRDV   +++G ++ + +   E  G    A+IA+  GR Y  MDR +  WD  K  +D   LG + +K  +A  AV +   +    D+++ P
Sbjct:   10 LIILDGWGYREVEEGNAVLSAGTPNLDRLVKDYP--WCLLEASGGAVGLP-EGMMGNSEDGHLNIGAGRIVYQNLTRINISIRNGDFFKNPVFLNAISKVKANDSSLHLIGLVSCGGVHSYTPHLHALIKLAKEKGLKKVYIHAFLDGRDVPPKTALGDIKKLNEFCKEHGG----AKIATVSGR-YYAMDR-DKRWDRTKLAYDVLTLGASQYKAPNAETAVSEAYGR-GETDEFVKP 238          
The following BLAST results are available for this feature:
BLAST of CX047086 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 275
Match NameE-valueIdentityDescription
GPMI_SILST2.360e-3239.382,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_LISIN2.360e-3236.932,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CELJU2.360e-3236.442,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_METMA6.867e-3235.682,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_LISW66.867e-3236.512,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_LISMO6.867e-3236.512,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_LISMF6.867e-3236.512,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_NATPD1.530e-3138.752,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_HALOH3.408e-3136.692,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI1_METAC3.408e-3137.242,3-bisphosphoglycerate-independent phosphoglycera... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS09_12A09_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12A09-A17-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047086 ID=CX047086; Name=CX047086; organism=Citrus sinensis; type=EST; length=842bp
CACTTGTTTGTTTGTTAGCTTTCTACGGACGCGCGATTCGCCTTCAATCC
AAAACTAATTAAGAGTGAAAGATGGATAACTGGAAATTAAAAGAGCATCC
ACAGCTGTCGAGGAATAACATTGTAGCCGTTGTGGTGCTGGATGGCTGGG
GTGAGTACAAGCCCGACAAGTATAACTGCATCCATGTCGCCGACACTCCC
ACCATGGACTCTTTCAAGAAGTCTGCACCTGAGAGGTGGAGGTTGGTCCG
AGCTCATGGTAGTGCTGTGGGGCTTCCAACTGAAGATGACATGGGTAACA
GTGAAGTCGGTCATAATGCACTCGGTGCTGGTCGCATTTTTGCTCAAGGT
GCAAAGCTTGTTGACCTTGCTCTGGCCTCTGGGAAAATCTATCAAGATGA
GGGATTTAATTACATTAAGCCGTCTTTTGAAACCGGCACATTGCACCTTA
TTGGGTTACTGAGTGATGGTGGAGTACACTCTAGGCTTGATCAACTTCAG
TTGTTGCTAAAAGGAGCTAGTGAGCGTGGTGCTAAAAGAATTCGTCTTCA
TATTCTTACTGACGGGCGTGATGTTTTGGATGGTTCAAGCGTAGGATTCG
TAGAAACTATTGAGAAAGATCTTGCAGAATTGCGTGGGAAAGGTGTTGAC
GCACAGATTGCATCTGGAGGAGGCCGCATGTACGTCACGATGGACCGTTA
TGAGAATGATTGGGATGTTGTCAAACGAGGATGGGATGCCCAAGTTCTTG
GAGAAGCTCCACACAAGTTTAAGAGCGCCGTTGAAGCTGTCAAAAAACTA
AGGGAACAGCCCAATGCCAATGACCAGTACTTACCTCCATTT
back to top