CX047086

Overview
NameCX047086
Unique NameCX047086
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length842
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047086 vs. ExPASy Swiss-Prot
Match: GPMI_COLP3 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=gpmI PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.813e-31
Identity = 87/250 (34.80%), Postives = 137/250 (54.80%), Query Frame = 3
Query:  105 LSRNNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGT--LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAEL-----RGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYL 833
            ++      +++LDGWG  +    N IH A+TP +D+ K   P    L+   G AVGLP E  MGNSEVGH  LGAGR+  Q    +  A++ G   ++    +   +  +    +H+ GLLS GGVHS  + +  +++ A +RGA+++ LH   DGRD    S+   +E  ++  ++L      G+G   QIAS  GR Y  MDR +  WD V+  ++  V GE  H++ SA++A+    E+ N ND+++
Sbjct:    1 MANKKSTVLMILDGWGYREETSSNAIHQANTPVLDNLKAKYPNM--LIDTSGMAVGLP-EGQMGNSEVGHVNLGAGRVVYQDFTRITKAISDGDFIENPTLCHAVDTATSNNKAVHIFGLLSPGGVHSHEEHIFAMMELAKKRGAQKVYLHAFLDGRDTPPRSAQASLEKAQQKFSKLFTETDTGEG---QIASVIGR-YYAMDR-DQRWDRVEAAYNLMVNGEGLHQYNSALDALAAAYER-NENDEFV 241          
BLAST of CX047086 vs. ExPASy Swiss-Prot
Match: GPMI_BACME (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Bacillus megaterium GN=gpmI PE=3 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 5.813e-31
Identity = 92/226 (40.71%), Postives = 130/226 (57.52%), Query Frame = 3
Query:  123 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYIKPSFETGT-LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVK 794
            VA+++LDG+     DK N +  A  P  D F    P     ++A G AVGLP E  MGNSEVGH  +GAGRI  Q    V++A+  G+  Q+E     +K + E GT LHL GLLSDGGVHS ++ L  LL+ A   G +++ +H   DGRDV   S+  +++ + + + E    GV  +IA+  GR Y +MDR +  W+ V++ + A V GE P  + SA E VK
Sbjct:    6 VALIILDGFALRDEDKGNAVTHAKKPNFDRFWNEYPHA--TLQASGEAVGLP-EGQMGNSEVGHLNIGAGRIVYQSLTRVNVAIREGEFEQNETLLAAVKHAKEKGTNLHLFGLLSDGGVHSHIEHLYALLRLAKSEGLEKVYIHGFLDGRDVAPQSAETYLKELNEKIEEY---GV-GEIATLSGR-YYSMDR-DKRWERVEKSYRAMVYGEGP-SYTSAEECVK 221          
BLAST of CX047086 vs. ExPASy Swiss-Prot
Match: GPMI_PROMT (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Prochlorococcus marinus (strain NATL2A) GN=gpmI PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 7.593e-31
Identity = 86/241 (35.68%), Postives = 130/241 (53.94%), Query Frame = 3
Query:  123 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETG--TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPP 839
            V + +LDGWG  +  ++N +  A TP +D+   + P    L+ A G+ VGLP E  MGNSEVGH  +GAGRI  Q    +   +   K+  +   N    S + G  TLH++GL SDGGVHS +  L  L++ A+ +G K + LH+ TDGRD    S+  ++ TIE   A+++  GV  +I+S  GR Y  MDR +N W+   + ++            SA E++ K   Q    D+++ P
Sbjct:   18 VVLAILDGWGYREEIEHNAVRQASTPVIDALWHAYPHT--LIEASGADVGLPDEQ-MGNSEVGHLTIGAGRIIQQELVRISNTVKENKLIANPALNQFSQSLKKGGGTLHIMGLCSDGGVHSHIKHLCGLIEWAASKGLKNVSLHLFTDGRDTSAKSATKYINTIE---AKIKATGV-GEISSLCGR-YWAMDR-DNRWERTSKAYELLTDPRFAISKLSAAESINK-SYQEGITDEFIEP 248          
BLAST of CX047086 vs. ExPASy Swiss-Prot
Match: GPMI_PSEMY (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Pseudomonas mendocina (strain ymp) GN=gpmI PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.295e-30
Identity = 88/236 (37.29%), Postives = 129/236 (54.66%), Query Frame = 3
Query:  123 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNY-IKPSFETG-TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNAND 824
            + +++LDG+G     +YN IH A TP  D  + + P    L+   G  VGLP +  MGNSEVGH  LGAGR+  Q    V  A+  G+ + +   N  +  +   G  +H++GLLSDGGVHS  D +  + + A+ RGA++I LH   DGRD    S+   +E ++   A L GKG   +IAS  GR Y  MDR +N WD V++ +   V G       SAVE ++   E+  +++
Sbjct:    8 LVLIILDGFGHSDKPEYNAIHAASTPVYDRLRATYPHG--LISGSGMDVGLP-DGQMGNSEVGHMNLGAGRVVYQDFTRVTKAIRDGEFFDNAAINQAVDKAVAAGKAVHILGLLSDGGVHSHQDHIVAMAELAARRGAEKIYLHAFLDGRDTPPKSAQPSIELLDAAFARL-GKG---RIASLTGR-YFAMDR-DNRWDRVEQAYHLIVDGAGQFNAASAVEGLQAAYERGESDE 234          
BLAST of CX047086 vs. ExPASy Swiss-Prot
Match: GPMI_PROM1 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Prochlorococcus marinus (strain NATL1A) GN=gpmI PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.295e-30
Identity = 86/241 (35.68%), Postives = 131/241 (54.36%), Query Frame = 3
Query:  123 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETG--TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPP 839
            V + +LDGWG  +  ++N +  A TP +D+   + P    L+ A G+ VGLP E  MGNSEVGH  +GAGRI  Q    +   +   K+  +   N    S + G  TLH++GL SDGGVHS ++ L  L++ A+ +G K + LH+ TDGRD    S+  ++ TIE   A+++  GV  +I+S  GR Y  MDR +N W+   + ++            SA E++ K   Q    D+++ P
Sbjct:   18 VVLAILDGWGYREEIEHNAVRQASTPVIDALWHAYPHT--LIEASGADVGLPDEQ-MGNSEVGHLTIGAGRIIQQELVRISNTVKENKLITNPALNQFSQSLKKGGGTLHIMGLCSDGGVHSHINHLCGLIEWAASKGLKSVSLHLFTDGRDTSAKSANKYINTIE---AKIKSTGV-GEISSLCGR-YWAMDR-DNRWERTSKAYELLTDPRFALSKLSAAESINK-SYQEGITDEFIEP 248          
BLAST of CX047086 vs. ExPASy Swiss-Prot
Match: GPMI_BACHD (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Bacillus halodurans GN=gpmI PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.295e-30
Identity = 89/243 (36.63%), Postives = 140/243 (57.61%), Query Frame = 3
Query:  123 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF----NYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPP 839
            VA+++LDG+      K N +  A+ P  D +    P    L++A G AVGLP E  MGNSEVGH  +GAGRI  Q    V+L++  G+ +++E F    N++K   +  +LH+ GL+SDGG+HS ++ L  LL+ A     +R+ +H   DGRDV   S+  ++  +E  + EL   GV  ++A+  GR Y  MDR +  WD V++ + A V GE P  + SA++ +K   E  + +D+++ P
Sbjct:    6 VALIILDGFAMRDEAKGNAVAQANKPNFDRYWNQYPHA--LLKADGEAVGLP-EGQMGNSEVGHLNIGAGRIVYQSLTRVNLSIREGEFFENETFLNAMNHVKE--KGSSLHIYGLVSDGGIHSHINHLYALLELAKREQVERVYIHGFLDGRDVGPTSAESYLVDLEAKMKEL---GV-GELATLHGR-YYAMDR-DKRWDRVEKSYRAMVYGEGP-AYSSALDVIKDSYEN-SIHDEFVIP 235          
BLAST of CX047086 vs. ExPASy Swiss-Prot
Match: GPMI_BACCN (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=gpmI PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.295e-30
Identity = 91/225 (40.44%), Postives = 131/225 (58.22%), Query Frame = 3
Query:  126 AVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYIKPSFETGT-LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVK 794
            A+++LDG+G  +    N +  A  P  D +    P     + A G AVGLP E  MGNSEVGH  +GAGRI  Q    V++A+  G+  ++E F N IK   E GT LHL GLLSDGGVHS +D +  LL+ A++ G +++ +H   DGRDV   ++ G+++      A ++  GV  Q A+  GR Y +MDR +  WD V++ + A V GE P  +K+A E V+
Sbjct:    6 ALIILDGFGLREETYGNAVAQAKKPNFDRYWNKFPHT--TLTACGEAVGLP-EGQMGNSEVGHLNIGAGRIVYQSLTRVNVAIREGEFDKNETFQNAIKHVKEKGTALHLFGLLSDGGVHSHIDHMFALLRLAAKEGVEKVYIHAFLDGRDVGPQTAKGYIDATN---AVIKETGV-GQFATIAGR-YYSMDR-DKRWDRVEKCYRAMVYGEGP-TYKNAYECVE 220          
BLAST of CX047086 vs. ExPASy Swiss-Prot
Match: GPMI_CLOD6 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Clostridium difficile (strain 630) GN=gpmI PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.691e-30
Identity = 83/239 (34.73%), Postives = 135/239 (56.49%), Query Frame = 3
Query:  123 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPP 839
            VA++++DG+G  K  K N I  + TP +D  KK  P    L+ A G  VGLP +  MGNSEVGH  +GAGRI  Q    +  ++  G  + ++       + +  +LH++GLLSDGGVHS +D L+ ++K A ++G +++ +H  TDGRD    S++ + + ++  + E+   GV  + A+  GR Y  MDR +  W+ V+  ++A V G    K  S  EA++   +    ND+++ P
Sbjct:    6 VALIIMDGFGYNKDVKGNAIAESKTPNLDRIKKEYPNT--LINASGLDVGLP-DGQMGNSEVGHTNIGAGRIVYQDLTRITKSIKDGDFFTNKVLCEAMDNAKENSLHVMGLLSDGGVHSHIDHLKAIIKMAKDKGVQKVYVHAFTDGRDTDPQSALEYAKEVQASMDEI---GV-GEFATVSGR-YYAMDR-DKRWERVELAYNAMVRG-IGEKANSIEEAIQNSYDD-GKNDEFIMP 233          
BLAST of CX047086 vs. ExPASy Swiss-Prot
Match: GPMI_VIBCM (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Vibrio cholerae serotype O1 (strain M66-2) GN=gpmI PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.209e-30
Identity = 92/245 (37.55%), Postives = 137/245 (55.92%), Query Frame = 3
Query:  105 LSRNNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYIKPSFETG-TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYL 833
            +S    +A+V+LDGWG  + +  N I+ A TP MDS   + P    L+ A G  VGLP +  MGNSEVGH  +GAGRI  Q    +  A+  G+   ++     I  +   G  +HL+GL+S GGVHS  D +   ++ A+ RGA++I LH   DGRD    S+   ++  +   A+L GKG   +IAS  GR Y  MDR +N+WD V++ +D   L +    + SAVEA++    +   ND+++
Sbjct:    1 MSAKKPMALVILDGWGYREDNANNAINNARTPVMDSLMANNPHT--LISASGMDVGLP-DGQMGNSEVGHTNIGAGRIVYQDLTRITKAIMDGEFQHNKVLVAAIDKAVAAGKAVHLMGLMSPGGVHSHEDHIYAAVEMAAARGAEKIYLHCFLDGRDTPPRSAEASLKRFQDLFAKL-GKG---RIASIVGR-YYAMDR-DNNWDRVEKAYDLLTLAQGEFTYDSAVEALQAAYAR-EENDEFV 235          
BLAST of CX047086 vs. ExPASy Swiss-Prot
Match: GPMI_VIBCH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Vibrio cholerae GN=gpmI PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.209e-30
Identity = 92/245 (37.55%), Postives = 137/245 (55.92%), Query Frame = 3
Query:  105 LSRNNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYIKPSFETG-TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYL 833
            +S    +A+V+LDGWG  + +  N I+ A TP MDS   + P    L+ A G  VGLP +  MGNSEVGH  +GAGRI  Q    +  A+  G+   ++     I  +   G  +HL+GL+S GGVHS  D +   ++ A+ RGA++I LH   DGRD    S+   ++  +   A+L GKG   +IAS  GR Y  MDR +N+WD V++ +D   L +    + SAVEA++    +   ND+++
Sbjct:    1 MSAKKPMALVILDGWGYREDNANNAINNARTPVMDSLMANNPHT--LISASGMDVGLP-DGQMGNSEVGHTNIGAGRIVYQDLTRITKAIMDGEFQHNKVLVAAIDKAVAAGKAVHLMGLMSPGGVHSHEDHIYAAVEMAAARGAEKIYLHCFLDGRDTPPRSAEASLKRFQDLFAKL-GKG---RIASIVGR-YYAMDR-DNNWDRVEKAYDLLTLAQGEFTYDSAVEALQAAYAR-EENDEFV 235          
The following BLAST results are available for this feature:
BLAST of CX047086 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 275
Match NameE-valueIdentityDescription
GPMI_COLP35.813e-3134.802,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_BACME5.813e-3140.712,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PROMT7.593e-3135.682,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PSEMY1.295e-3037.292,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PROM11.295e-3035.682,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_BACHD1.295e-3036.632,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_BACCN1.295e-3040.442,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CLOD61.691e-3034.732,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_VIBCM2.209e-3037.552,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_VIBCH2.209e-3037.552,3-bisphosphoglycerate-independent phosphoglycera... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS09_12A09_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12A09-A17-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047086 ID=CX047086; Name=CX047086; organism=Citrus sinensis; type=EST; length=842bp
CACTTGTTTGTTTGTTAGCTTTCTACGGACGCGCGATTCGCCTTCAATCC
AAAACTAATTAAGAGTGAAAGATGGATAACTGGAAATTAAAAGAGCATCC
ACAGCTGTCGAGGAATAACATTGTAGCCGTTGTGGTGCTGGATGGCTGGG
GTGAGTACAAGCCCGACAAGTATAACTGCATCCATGTCGCCGACACTCCC
ACCATGGACTCTTTCAAGAAGTCTGCACCTGAGAGGTGGAGGTTGGTCCG
AGCTCATGGTAGTGCTGTGGGGCTTCCAACTGAAGATGACATGGGTAACA
GTGAAGTCGGTCATAATGCACTCGGTGCTGGTCGCATTTTTGCTCAAGGT
GCAAAGCTTGTTGACCTTGCTCTGGCCTCTGGGAAAATCTATCAAGATGA
GGGATTTAATTACATTAAGCCGTCTTTTGAAACCGGCACATTGCACCTTA
TTGGGTTACTGAGTGATGGTGGAGTACACTCTAGGCTTGATCAACTTCAG
TTGTTGCTAAAAGGAGCTAGTGAGCGTGGTGCTAAAAGAATTCGTCTTCA
TATTCTTACTGACGGGCGTGATGTTTTGGATGGTTCAAGCGTAGGATTCG
TAGAAACTATTGAGAAAGATCTTGCAGAATTGCGTGGGAAAGGTGTTGAC
GCACAGATTGCATCTGGAGGAGGCCGCATGTACGTCACGATGGACCGTTA
TGAGAATGATTGGGATGTTGTCAAACGAGGATGGGATGCCCAAGTTCTTG
GAGAAGCTCCACACAAGTTTAAGAGCGCCGTTGAAGCTGTCAAAAAACTA
AGGGAACAGCCCAATGCCAATGACCAGTACTTACCTCCATTT
back to top