CX047085

Overview
NameCX047085
Unique NameCX047085
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length849
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX047085 vs. ExPASy Swiss-Prot
Match: Y4312_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At4g31250 OS=Arabidopsis thaliana GN=At4g31250 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.834e-11
Identity = 52/184 (28.26%), Postives = 89/184 (48.37%), Query Frame = 2 
Query:  320 YKGRLQDGNDNRRWIAVKKFTKHAWPDPKQFADEAWGVGKLRHKRLANLIGYCCDGDERLLVAEYMPNDTLAKHLFHWENQT-----IEWAMRLRVALYIAEALDYCSSEGRPL---YHDLNAYRVLFDENGDPRLSCFGLMKNSRDGKSYSTNLAYTPPEYLRNGRVTPESVIFSFGTVLLDL 847
            YK  L  G    R + VK+F   +    ++F D    +G+L H  L  LI +    +E+LLV  Y+ N +LA +L H  N+T     ++W +RL++   +   L Y       L   +  L +  VL D N +P L+ + L+      +S    +AY  PE+ +  R +  S ++S G ++L++
Sbjct:  381 YKAALSSG----RAVVVKRFRFMSNIGREEFYDHMKKIGRLSHPNLLPLIAFYYRKEEKLLVTNYISNGSLA-NLLH-ANRTPGQVVLDWPIRLKIVRGVTRGLAYLYRVFPDLNLPHGHLKSSNVLLDPNFEPLLTDYALVPVVNRDQSQQFMVAYKAPEFTQQDRTSRRSDVWSLGILILEI 558
The following BLAST results are available for this feature:
BLAST of CX047085 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
Y4312_ARATH8.834e-1128.26Probable LRR receptor-like serine/threonine-protei... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_12A08_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12A08-A15-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047085 ID=CX047085; Name=CX047085; organism=Citrus sinensis; type=EST; length=849bp
TTCAGCTGCTGAGCTGGGGGGTTTGGTTGGTTCATTTCTTCTGAGTCAAC
TCGGCCGAGTTATGGGCTGTTGCGAATCAACCTTCTTAAAAGGACACCTC
TCGGTTGATACCAAAAATCGCCACCACCACCAACAGAATCACCGCAATCA
TCCGACTCAGCCGTCTAATGGTACTGAGGGCTCAGGCGGACTCGCTGCCG
GCTCAGATGGCGCGCCGGCTTTCGCCGAGTTCTCCTTAGCCGACCTCAGA
GCCGCTACGAATAACTTCAGTTCTGATTTTATCGTATCCGAGAGCGGCGA
AAAGGCTCCCAATGTCGTCTATAAAGGCCGCCTTCAAGACGGAAATGATA
ACCGCCGTTGGATCGCCGTTAAAAAATTCACCAAACATGCCTGGCCCGAT
CCCAAACAGTTTGCTGATGAGGCTTGGGGTGTTGGGAAGCTGAGGCATAA
GAGGCTGGCGAATTTGATTGGCTATTGTTGTGATGGTGATGAGAGATTGC
TGGTGGCTGAGTACATGCCAAATGATACTCTTGCTAAACATTTATTTCAC
TGGGAGAATCAAACCATTGAGTGGGCTATGCGTCTAAGAGTTGCTCTGTA
TATTGCTGAAGCTTTAGATTATTGCAGTAGTGAAGGACGTCCATTATACC
ATGATTTGAATGCTTATAGGGTTCTCTTTGATGAGAATGGTGATCCTCGG
CTTTCATGTTTTGGCTTGATGAAAAATAGTAGGGATGGAAAAAGTTACAG
CACAAATCTTGCCTATACTCCTCCAGAGTACCTAAGAAATGGAAGGGTCA
CTCCAGAAAGTGTTATTTTCAGCTTCGGGACTGTCCTTTTGGATCTTCT
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