CX047083

Overview
NameCX047083
Unique NameCX047083
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length919
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA_PSEA6 (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=gpmA PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 9.309e-33
Identity = 65/127 (51.18%), Postives = 89/127 (70.08%), Query Frame = -1
Query:  518 WSQIFSEDPMKQ-SIPVVTAWQLNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPPPNGESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLY 895
            W + F   P ++  + +  + QLNER YG LQGLNK +    +G EQVH WRRSY++ PPNGESL M A RA+AYF+  I P LQ GKNV++ AHGNSLR+IIM+++K+T+ ++ + EL T  P +Y
Sbjct:   86 WYEHFEASPAEELELRIYVSQQLNERYYGDLQGLNKDKARQLFGDEQVHTWRRSYNVAPPNGESLAMTATRAIAYFQSHIVPALQQGKNVLVCAHGNSLRAIIMHIEKMTAAQIAAYELKTASPHIY 212          
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA_PARL1 (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=gpmA PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 9.309e-33
Identity = 64/130 (49.23%), Postives = 98/130 (75.38%), Query Frame = -1
Query:  518 QARTWSQIFSEDPMKQSIPVVTAWQLNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPPPNGESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLY 907
            +A+  ++I  E+  +  I ++    LNER YG L GLNK +  +++G+EQVH+WRRSYDIPPP GESL+M A+R + YF+ +I P++  G+ V+IAAHGNSLRS++M LDKL+ ++V++L ++TG P++Y
Sbjct:   61 RAQETNRIVLEELGQGDIEIIENEALNERDYGDLSGLNKDDAREKWGEEQVHIWRRSYDIPPPGGESLKMTAERVLPYFEKEILPRVLKGERVLIAAHGNSLRSLVMQLDKLSQEQVLALNIATGAPIVY 190          
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA_CHLAB (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Chlamydophila abortus GN=gpmA PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 9.309e-33
Identity = 71/143 (49.65%), Postives = 102/143 (71.33%), Query Frame = -1
Query:  491 NESEQARTWSQIFSEDPMKQSIPVVTAWQLNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPPPNGESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLYIFKEGKFIR 919
            ++  + +  S+I+S D +   IP+  +  LNERMYG LQG NK++TA+++G+EQV +WRRSY   PPNGESL    QR + YF++ I P LQ+ KNV ++AHGNSLRS+IM ++KL+ +EV SLEL TG P++Y++    F R
Sbjct:   80 HDDPEQKHMSKIYS-DEVNHMIPLYRSSALNERMYGELQGKNKKKTAEQFGEEQVKLWRRSYKTAPPNGESLYDTGQRTIPYFQETIFPLLQNSKNVFVSAHGNSLRSLIMDIEKLSEEEVHSLELPTGKPIVYLWTGHTFER 221          
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: PMGY_SCHPO (Phosphoglycerate mutase OS=Schizosaccharomyces pombe GN=gpm1 PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.537e-32
Identity = 65/142 (45.77%), Postives = 101/142 (71.13%), Query Frame = -1
Query:  488 EQARTWSQIFSEDPMKQSIPVVTAWQLNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPPPNGESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLY-IFKEGKFIRR 910
            ++A+   QI  E+  + ++  + + +LNER YG LQGLNK +   ++G EQV +WRRSYDI PPNGESL+  A+R + Y+K  I P +  G+ V+IAAHGNSLR++IM L+ LT  +++  EL+TG+P++Y + K+GK++ +
Sbjct:   65 QRAQKTCQIILEEVGEPNLETIKSEKLNERYYGDLQGLNKDDARKKWGAEQVQIWRRSYDIAPPNGESLKDTAERVLPYYKSTIVPHILKGEKVLIAAHGNSLRALIMDLEGLTGDQIVKRELATGVPIVYHLDKDGKYVSK 206          
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA_RHIME (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Rhizobium meliloti GN=gpmA PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.311e-30
Identity = 61/130 (46.92%), Postives = 89/130 (68.46%), Query Frame = -1
Query:  518 QARTWSQIFSEDPMKQSIPVVTAWQLNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPPPNGESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLY 907
            +A+   Q+  +   + S+  +    LNER YG L GLNK +   ++G+EQVH+WRRSYD+PPP GESL     R   Y+   I P++ SG+ V++AAHGNSLRS++M LDKLT ++++ L L+TG+PM+Y
Sbjct:   61 RAQRTCQLVLDAVGQSSLETIRDQALNERDYGDLSGLNKDDARAKWGEEQVHIWRRSYDVPPPGGESLRDTGARVWPYYLTDILPRVLSGEKVLVAAHGNSLRSLVMVLDKLTKEQILKLNLATGVPMVY 190          
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA_RHISN (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Rhizobium sp. (strain NGR234) GN=gpmA PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 4.324e-30
Identity = 59/119 (49.58%), Postives = 86/119 (72.27%), Query Frame = -1
Query:  509 KQSIPVVTAWQLNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPPPNGESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLYIFK 865
            + S+  +    LNER YG L GLNK +   ++G+EQVH+WRRSYD+PPP GESL     R   Y+  +I P++ +G+ V++AAHGNSLRS++M LD+LT ++V++L L+TG+PM+Y  K
Sbjct:   75 QSSLETICDQALNERDYGDLSGLNKDDARAKWGEEQVHIWRRSYDVPPPGGESLRDTGARVWPYYLTEILPRVLAGEKVLVAAHGNSLRSLVMVLDRLTKEQVLNLNLATGVPMVYKLK 193          
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA_RHILW (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=gpmA PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 4.324e-30
Identity = 60/116 (51.72%), Postives = 83/116 (71.55%), Query Frame = -1
Query:  509 IPVVTAWQLNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPPPNGESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLYIFK 856
            +P +    LNER YG L GLNK +   ++G+EQVH+WRRSYD+PPP GESL     R   Y+  +I P++  G+ V++AAHGNSLRS++M LDKLT + V++L L+TG+PM+Y  K
Sbjct:   78 LPTIRDQALNERDYGDLSGLNKDDARAKWGEEQVHIWRRSYDVPPPGGESLRDTGARVWPYYLTEILPRVLRGEKVLVAAHGNSLRSLVMVLDKLTKEGVLALNLATGVPMVYKLK 193          
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA_CYTH3 (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=gpmA PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 4.324e-30
Identity = 58/116 (50.00%), Postives = 87/116 (75.00%), Query Frame = -1
Query:  512 SIPVVTAWQLNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPPPNGESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLYIF 859
            +IP++    LNER YG LQGLNK E  ++YG +Q+  WRRSY   PP GESLE   QR + Y++++IEP+L+ G+NV+I AHGNSLR+++M+L+K++ +++  ++L+TG P LY F
Sbjct:   73 TIPIIENEALNERNYGDLQGLNKAEVGEKYGAQQLIAWRRSYTEVPPGGESLENTCQRVIPYYQEKIEPELKDGRNVLIVAHGNSLRALMMHLEKISPEDIAHVDLATGAPRLYEF 188          
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA2_LACPL (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase 2 OS=Lactobacillus plantarum GN=gpmA2 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 7.376e-30
Identity = 62/142 (43.66%), Postives = 93/142 (65.49%), Query Frame = -1
Query:  506 IPVVTAWQLNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPPP-------------------------NGESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLYIFKE 856
            IP    W+LNER YG LQGLNK+ETA++YG +QVH+WRRSYD+ PP                          GE+L++  +R + +++DQI P+L  GKNV+IAAHGNSLR++  Y+++++  +++ LE++TG P++Y F E
Sbjct:   77 IPETKTWRLNERHYGALQGLNKKETAEKYGDDQVHIWRRSYDVLPPLLSADDEGSAVNDRRYADLDPNIVPGGENLKVTLERVMPFWEDQIAPKLLDGKNVIIAAHGNSLRALSKYIEQISDDDIMDLEMATGEPVVYDFDE 218          
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA_CLOPH (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=gpmA PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 9.633e-30
Identity = 67/149 (44.97%), Postives = 96/149 (64.43%), Query Frame = -1
Query:  488 IPVVTAWQLNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPPPN-------------------------GESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLY-IFKEGKFIRR 856
            +PVV +W+LNER YG LQGLNK ETA+RYG+EQV +WRRSYDI PP                          GESL+    R V Y+ + I   + +GK V+IAAHGNSLR+++ YL+ ++ ++++++ L TGIP++Y + +EGKFI +
Sbjct:   76 LPVVKSWKLNERHYGTLQGLNKSETAERYGEEQVKIWRRSYDIAPPLLKEEDERNPRFQEQYRQEKCEILPLGESLKDTIARVVPYYNEVILKDMMAGKRVLIAAHGNSLRALMKYLEDMSPEDILNVNLPTGIPLVYELDEEGKFISK 224          
The following BLAST results are available for this feature:
BLAST of CX047083 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 435
Match NameE-valueIdentityDescription
GPMA_PSEA69.309e-3351.182,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_PARL19.309e-3349.232,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_CHLAB9.309e-3349.652,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
PMGY_SCHPO3.537e-3245.77Phosphoglycerate mutase OS=Schizosaccharomyces pom... [more]
GPMA_RHIME3.311e-3046.922,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_RHISN4.324e-3049.582,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_RHILW4.324e-3051.722,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_CYTH34.324e-3050.002,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA2_LACPL7.376e-3043.662,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_CLOPH9.633e-3044.972,3-bisphosphoglycerate-dependent phosphoglycerate... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_12A07_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12A07-A13-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047083 ID=CX047083; Name=CX047083; organism=Citrus sinensis; type=EST; length=919bp
TTTTTAATCGGAAGGAAAAGCTTCTATTTCCTGTCAATTCTTATTTCTTC
AAAGTATTTGCATAACTCCATTACAGACATACAAGAAAATACAGCACCCA
AAATTCTCTTAGTTCAGTCCCTCTTATACATATCTTTCTTTCACACTGAA
ACATACATCTATCTCTTAGTTCATGCCAGAGAGATGTTGGATTGATCAAC
TACTGAAAAAGTACAAAAGGCAATAGCCACTACCCAGCCTTCTGACCCAC
TATCAAGAACTACATCAATACATTTCCTGAAACTAGCTTTTGCACATGTG
CGTTTCATTCCCTTGCAATCTAGTAATGAAACCAGCAGGACAGCAGAAGT
GAAGCAATGGGAATCGGGAGGTAAGCCCCTAAGCTTCAAAGATGTTAATG
CAACATCTCGTCTAACTTCTGTCTATATTGAGCTAAACGCCGTGTATAAG
CATAGACTCCAGCCTCCGCTGGTCCCGCTGGACTTCCCCTTCTAATGAAC
TTTCCCTCTTTGAATATGTAAAGCATGGGTATTCCAGTTGATAGTTCTAA
ACTGATCACCTCTTGGGAAGTTAATTTGTCAAGATACATAATGATGGACC
TCAGTGAATTCCCATGGGCAGCAATCATTACATTCTTTCCTGATTGAAGT
TGCGGTTCAATCTGATCTTTAAAATAAGCAACGGCTCTTTGAGCACACAT
TTCCAAGCTCTCACCATTTGGTGGAGGAATGTCATAACTCCGACGCCACA
CGTGGACTTGTTCCTTTCCATATCTATCAGCCGTTTCCTGCTTATTTAGA
CCCTGTAATTACCCATACATTCTTTCATTCAATTGCCAAGCTGTTACAAC
GGGAATGGACTGCTTCATGGGGTCTTCGCTGAAGATCTGACTCCAGGTCC
TTGCCTGTTCACTTTCATT
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