CX047083

Overview
NameCX047083
Unique NameCX047083
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length919
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA_AGRVS (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=gpmA PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.258e-29
Identity = 58/105 (55.24%), Postives = 80/105 (76.19%), Query Frame = -1
Query:  518 LNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPPPNGESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLY 832
            LNER YG L GLNK +   ++G+EQVH+WRRSYDIPPP GESL     R   Y+  +I P++  G+ V++AAHGNSLRS++M LDKLT ++++S+ L+TG+PM+Y
Sbjct:   86 LNERDYGDLSGLNKDDARAKWGEEQVHIWRRSYDIPPPGGESLRDTGARVWPYYLTEILPRVLRGEKVLVAAHGNSLRSLVMVLDKLTKEQILSVNLATGVPMVY 190          
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA_CYAP7 (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Cyanothece sp. (strain PCC 7424) GN=gpmA PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.643e-29
Identity = 63/122 (51.64%), Postives = 87/122 (71.31%), Query Frame = -1
Query:  518 FSEDPMKQSIPVVTAWQLNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPPPNGESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLY 883
            +  DP K+ +P+  +  L+ER YG LQGLNK +TA +YG EQVH WRRSY   PP GESLE   +R + YF+++I   +  G  VM+AAHGNSLR++IM L+ L  ++V +LEL+TGIP++Y
Sbjct:   98 YDGDP-KEELPIFPSQALDERYYGDLQGLNKAQTAQKYGSEQVHEWRRSYFTRPPGGESLEDTQKRVIPYFENRILTHIAHGDTVMVAAHGNSLRAMIMRLENLQPEDVPNLELATGIPLIY 218          
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA_SINMW (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Sinorhizobium medicae (strain WSM419) GN=gpmA PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 2.146e-29
Identity = 60/130 (46.15%), Postives = 88/130 (67.69%), Query Frame = -1
Query:  518 QARTWSQIFSEDPMKQSIPVVTAWQLNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPPPNGESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLY 907
            +A+   Q+  +   + S+  +    LNER YG L GLNK +   ++G+EQVH+WRRSYD+PPP GESL     R   Y+   I P++ SG+ V++AAHGNSLRS++M LD LT ++++ L L+TG+PM+Y
Sbjct:   61 RAQRTCQLVLDAVDQSSLETIRDQALNERDYGDLSGLNKDDARAKWGEEQVHIWRRSYDVPPPGGESLRDTGARVWPYYLTDILPRVLSGEKVLVAAHGNSLRSLVMVLDGLTKEQILKLNLATGVPMVY 190          
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA_AGRRK (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=gpmA PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 2.146e-29
Identity = 56/105 (53.33%), Postives = 81/105 (77.14%), Query Frame = -1
Query:  518 LNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPPPNGESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLY 832
            LNER YG L GLNK +   ++G+EQVH+WRRSYD+PPP GESL     R   Y+  +I P++ +G+ V++AAHGNSLRS++M LD+LT +++++L L+TG+PM+Y
Sbjct:   86 LNERDYGDLSGLNKDDARAKWGEEQVHIWRRSYDVPPPGGESLRDTGARVWPYYLTEILPRVLAGQKVLVAAHGNSLRSLVMVLDRLTKEQILALNLATGVPMVY 190          
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA_RHIE6 (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Rhizobium etli (strain CIAT 652) GN=gpmA PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.803e-29
Identity = 59/105 (56.19%), Postives = 79/105 (75.24%), Query Frame = -1
Query:  518 LNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPPPNGESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLY 832
            LNER YG L GLNK +   ++G+EQVHVWRRSYD+PPP GESL     R   Y+  +I P++  G+ V++AAHGNSLRS++M LDKLT + V++L L+TG+PM+Y
Sbjct:   86 LNERDYGDLSGLNKDDARAKWGEEQVHVWRRSYDVPPPGGESLRDTGARVWPYYLTEILPRVLHGEKVLVAAHGNSLRSLVMVLDKLTKEGVLALNLATGVPMVY 190          
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA_METS4 (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Methylobacterium sp. (strain 4-46) GN=gpmA PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.803e-29
Identity = 60/133 (45.11%), Postives = 90/133 (67.67%), Query Frame = -1
Query:  509 QARTWSQIFSEDPMKQSIPVVTAWQLNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPPPNGESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLYIFK 907
            +A+  + +  E+  +  +P +    LNER YG L GLNK +   R+GK+QVH+WRRSYD+PPP GESL+    R + Y   +I P++  G+ V++AAHGNSLR+++M LD LT++ +  LEL TG+P++Y  K
Sbjct:   61 RAQRTAALILEELGQPDLPTIADEALNERDYGDLSGLNKDDARARWGKDQVHIWRRSYDVPPPGGESLKDTVARVLPYTMREILPRVMRGERVLVAAHGNSLRALVMVLDGLTTETIPGLELWTGVPLVYRLK 193          
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA1_GLOVI (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase 1 OS=Gloeobacter violaceus GN=gpmA1 PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.661e-29
Identity = 64/133 (48.12%), Postives = 89/133 (66.92%), Query Frame = -1
Query:  518 ESEQARTWSQIFSEDPMKQSIPVVTAWQLNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPPPNGESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLY 916
            + E    W   +  DP  + +P+     L+ER YG LQGL+K ET  +YGKEQV +WRRSY + PP GESLE   +R   YF ++I   ++ G NV++AAHGNSLRSIIM L+ L+ +EV  +EL+TG+P++Y
Sbjct:   86 DDENWHGWDN-YDGDPAAE-LPIYPTATLDERYYGDLQGLDKAETTAKYGKEQVQIWRRSYSVRPPGGESLEDTRKRVYPYFTNRILGHIKQGDNVLVAAHGNSLRSIIMILETLSEEEVPKVELATGVPIVY 216          
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA_METPB (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=gpmA PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 4.781e-29
Identity = 60/133 (45.11%), Postives = 90/133 (67.67%), Query Frame = -1
Query:  509 QARTWSQIFSEDPMKQSIPVVTAWQLNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPPPNGESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLYIFK 907
            +A+    +  E+  +  +  +    LNER YG L GLNK +  +R+G  QVH WRRSYD+PPP GESL+  A R + Y+   I P++ SG+ V++AAHGNSLR+++M LD +T++ + SLE++TGIP++Y  K
Sbjct:   61 RAQNTCALILEEMGQAGLETIRNEALNERDYGDLSGLNKDDARERWGDAQVHEWRRSYDVPPPGGESLKDTAARVLPYYIQTILPRVMSGERVLVAAHGNSLRALVMVLDGMTTKTIASLEIATGIPLVYRLK 193          
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA_METEP (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Methylobacterium extorquens (strain PA1) GN=gpmA PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 6.244e-29
Identity = 58/108 (53.70%), Postives = 81/108 (75.00%), Query Frame = -1
Query:  509 LNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPPPNGESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLYIFK 832
            LNER YG L GLNK +  +R+G  QVH WRRSYD+PPP GESL+  A R + Y+   I P++ SG+ V++AAHGNSLR+++M LD +T++ + SLE++TGIP++Y  K
Sbjct:   86 LNERDYGDLSGLNKDDARERWGDAQVHEWRRSYDVPPPGGESLKDTAARVLPYYIQTILPRVMSGERVLVAAHGNSLRALVMVLDGMTTKTIASLEIATGIPLVYRLK 193          
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA_METC4 (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) GN=gpmA PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 6.244e-29
Identity = 58/108 (53.70%), Postives = 81/108 (75.00%), Query Frame = -1
Query:  509 LNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPPPNGESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLYIFK 832
            LNER YG L GLNK +  +R+G  QVH WRRSYD+PPP GESL+  A R + Y+   I P++ SG+ V++AAHGNSLR+++M LD +T++ + SLE++TGIP++Y  K
Sbjct:   86 LNERDYGDLSGLNKDDARERWGDAQVHEWRRSYDVPPPGGESLKDTAARVLPYYIQTILPRVMSGERVLVAAHGNSLRALVMVLDGMTTKTIASLEIATGIPLVYRLK 193          
The following BLAST results are available for this feature:
BLAST of CX047083 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 435
Match NameE-valueIdentityDescription
GPMA_AGRVS1.258e-2955.242,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_CYAP71.643e-2951.642,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_SINMW2.146e-2946.152,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_AGRRK2.146e-2953.332,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_RHIE62.803e-2956.192,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_METS42.803e-2945.112,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA1_GLOVI3.661e-2948.122,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_METPB4.781e-2945.112,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_METEP6.244e-2953.702,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_METC46.244e-2953.702,3-bisphosphoglycerate-dependent phosphoglycerate... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_12A07_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12A07-A13-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047083 ID=CX047083; Name=CX047083; organism=Citrus sinensis; type=EST; length=919bp
TTTTTAATCGGAAGGAAAAGCTTCTATTTCCTGTCAATTCTTATTTCTTC
AAAGTATTTGCATAACTCCATTACAGACATACAAGAAAATACAGCACCCA
AAATTCTCTTAGTTCAGTCCCTCTTATACATATCTTTCTTTCACACTGAA
ACATACATCTATCTCTTAGTTCATGCCAGAGAGATGTTGGATTGATCAAC
TACTGAAAAAGTACAAAAGGCAATAGCCACTACCCAGCCTTCTGACCCAC
TATCAAGAACTACATCAATACATTTCCTGAAACTAGCTTTTGCACATGTG
CGTTTCATTCCCTTGCAATCTAGTAATGAAACCAGCAGGACAGCAGAAGT
GAAGCAATGGGAATCGGGAGGTAAGCCCCTAAGCTTCAAAGATGTTAATG
CAACATCTCGTCTAACTTCTGTCTATATTGAGCTAAACGCCGTGTATAAG
CATAGACTCCAGCCTCCGCTGGTCCCGCTGGACTTCCCCTTCTAATGAAC
TTTCCCTCTTTGAATATGTAAAGCATGGGTATTCCAGTTGATAGTTCTAA
ACTGATCACCTCTTGGGAAGTTAATTTGTCAAGATACATAATGATGGACC
TCAGTGAATTCCCATGGGCAGCAATCATTACATTCTTTCCTGATTGAAGT
TGCGGTTCAATCTGATCTTTAAAATAAGCAACGGCTCTTTGAGCACACAT
TTCCAAGCTCTCACCATTTGGTGGAGGAATGTCATAACTCCGACGCCACA
CGTGGACTTGTTCCTTTCCATATCTATCAGCCGTTTCCTGCTTATTTAGA
CCCTGTAATTACCCATACATTCTTTCATTCAATTGCCAAGCTGTTACAAC
GGGAATGGACTGCTTCATGGGGTCTTCGCTGAAGATCTGACTCCAGGTCC
TTGCCTGTTCACTTTCATT
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