CX047083

Overview
NameCX047083
Unique NameCX047083
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length919
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA_RHOCS (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=gpmA PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 8.155e-29
Identity = 62/138 (44.93%), Postives = 86/138 (62.32%), Query Frame = -1
Query:  518 IPVVTAWQLNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPP-------------------------PNGESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLY 856
            +PV   W+LNER YG LQGLNK +TA ++GKEQVH+WRRSYDIPP                         P  ESL+ C  R + Y+ + I PQ+++G+ V+I+AHGNSLR ++MYL  L+ +E+   E+ TG P++Y
Sbjct:   77 LPVQKDWRLNERHYGGLQGLNKTQTAAQHGKEQVHIWRRSYDIPPPPLPEGDERLPDGDRRYKGLSKEQLPRTESLKDCVARVLPYWHESIAPQIRAGQRVLISAHGNSLRGLVMYLSGLSEEEITGFEIPTGRPLVY 214          
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA_RHIL3 (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=gpmA PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 8.155e-29
Identity = 58/108 (53.70%), Postives = 80/108 (74.07%), Query Frame = -1
Query:  509 LNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPPPNGESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLYIFK 832
            LNER YG L GLNK +   ++G+EQVH+WRRSYD+PPP GESL     R   Y+  +I P++  G+ V++AAHGNSLRS++M LDKL+ + V++L L+TG+PM+Y  K
Sbjct:   86 LNERDYGDLSGLNKDDARAKWGEEQVHIWRRSYDVPPPGGESLRDTGARVWPYYLTEILPRVLRGEKVLVAAHGNSLRSLVMVLDKLSREGVLALNLATGVPMVYKLK 193          
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA_BRASO (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Bradyrhizobium sp. (strain ORS278) GN=gpmA PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 8.155e-29
Identity = 60/137 (43.80%), Postives = 93/137 (67.88%), Query Frame = -1
Query:  509 NESEQARTWSQIFSEDPMKQSIPVVTAWQLNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPPPNGESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLYIFK 919
            +E  +A+   ++  ++  +  +P      LNER YG L GLNK +   ++G+EQVHVWRRSYD+PPP GESL+    RA+ Y+  +I P + +G+  ++AAHGNSLR++IM L+KLT + ++  EL+TG+P++Y  K
Sbjct:   58 SELTRAQHTLKLILDELGQPGLPTSKNLALNERDYGDLSGLNKDDARAKWGEEQVHVWRRSYDVPPPGGESLKDTLARALPYYVQEILPGVLNGQRTLVAAHGNSLRALIMVLEKLTPEGILKRELATGVPIIYRLK 194          
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA_METSB (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=gpmA PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.065e-28
Identity = 58/108 (53.70%), Postives = 79/108 (73.15%), Query Frame = -1
Query:  509 LNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPPPNGESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLYIFK 832
            LNER YG L GLNK E A ++G EQVH+WRRSYD+PPP GESL+    R + Y+  +I P + +GK  ++ AHGNSLR++IM LDKLT + +  +EL+TG+P++Y  K
Sbjct:   86 LNERDYGDLSGLNKAEAAQQWGDEQVHLWRRSYDVPPPGGESLKDTVARVLPYYCQEILPAVLNGKRTLVTAHGNSLRALIMVLDKLTPKTIPGMELATGVPIVYRLK 193          
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA_ALTMD (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=gpmA PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.065e-28
Identity = 63/149 (42.28%), Postives = 92/149 (61.74%), Query Frame = -1
Query:  506 EDPMKQSIPVVTAWQLNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPPP-------------------------NGESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLYIFKE 877
            E+  +  +PV   W+LNER YG L GL+K ETA ++G+EQV +WRRS+DIPPP                          GESL++  +R + Y+ D I P +Q+GK V+IAAHGNSLR+++ YLD ++ +EV+ L + TG+P++Y   E
Sbjct:   70 EEMGQHYLPVERHWRLNERHYGALTGLDKAETAAKHGEEQVKIWRRSFDIPPPAVEDDSEHFPGHDPRYNNVDADILPRGESLKLTIERVLPYWHDVIRPDIQAGKRVIIAAHGNSLRALVKYLDGMSDEEVLGLNIPTGVPLVYELDE 218          
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA_CORJK (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Corynebacterium jeikeium (strain K411) GN=gpmA PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.391e-28
Identity = 71/188 (37.77%), Postives = 106/188 (56.38%), Query Frame = -1
Query:  416 QARTWSQIFSEDPMKQSIPVVTAWQLNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPP-----------------------PNGESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLY-IFKEGKFIRRGSPAGPAEAGVYAYTRRLAQYRQK 907
            +A T + I  +   +  IPVV  W+LNER YG LQGLNK ET D+YG+EQ   WRRSYD PP                       P  E L    +R + Y++++IEP++++G+ V++AAHGNSLR+++ +LDK++ +++  L + TGIP++Y I  +GK +  G      EA         AQ + K
Sbjct:   67 RAITTANIALDAADRHWIPVVRDWRLNERHYGALQGLNKAETKDKYGEEQFMAWRRSYDTPPPAIDADNEYAQTNDPRYADLSEIPATECLLDVVKRFIPYYEEEIEPRVKNGETVLVAAHGNSLRALVKHLDKISDEDIAGLNIPTGIPLVYNIDADGKVLNPGGDYLDPEAAAAGAAAVAAQGQAK 254          
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA_BRASB (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=gpmA PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.391e-28
Identity = 60/137 (43.80%), Postives = 92/137 (67.15%), Query Frame = -1
Query:  509 NESEQARTWSQIFSEDPMKQSIPVVTAWQLNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPPPNGESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLYIFK 919
            +E  +A+   ++  ++  +  +P      LNER YG L GLNK +   ++G+EQVHVWRRSYD+PPP GESL+    RA+ Y+  +I P +  G+  ++AAHGNSLR++IM L+KLT + ++  EL+TG+P++Y  K
Sbjct:   58 SELTRAQHTLKLILDELGQPGLPTSRNLALNERDYGDLSGLNKDDARAKWGEEQVHVWRRSYDVPPPGGESLKDTLARALPYYVQEILPGVLRGQRTLVAAHGNSLRALIMVLEKLTPEGILKRELATGVPIIYRLK 194          
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA_MESSB (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Mesorhizobium sp. (strain BNC1) GN=gpmA PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.817e-28
Identity = 56/105 (53.33%), Postives = 78/105 (74.29%), Query Frame = -1
Query:  518 LNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPPPNGESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLY 832
            LNER YG L GLNK +   ++G+EQVH+WRRSYDIPPP GESL     R   Y+  +I PQ+  GK V+++AHGNSLRS+ M LD L+ +E++ +E++TG+P++Y
Sbjct:   86 LNERDYGDLSGLNKDDARKKWGEEQVHIWRRSYDIPPPGGESLRDTGARVWPYYLREILPQVLRGKTVLVSAHGNSLRSLAMVLDGLSGEEIVKMEIATGVPIVY 190          
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA_LISIN (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Listeria innocua GN=gpmA PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.373e-28
Identity = 60/145 (41.38%), Postives = 95/145 (65.52%), Query Frame = -1
Query:  518 EDPMKQSIPVVTAWQLNERMYG*LQGLNKQETADRYGKEQVHVWRRSYD-IPP------------------------PNGESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLY 877
            E+  +  +PV  +W+LNER YG LQGLNKQETA++YG +QV  WRRSYD +PP                        P+GE+L++  +R + Y+ D I P++++G+ V+IAAHGNSLR+++ +L+ ++  E++ LE+ TG+P++Y
Sbjct:   69 EESDQMWVPVHKSWRLNERHYGALQGLNKQETAEKYGADQVQKWRRSYDTLPPLLEENDERQAKNDRRYQLLDTHAIPSGENLKVTLERVIPYWMDTIAPEIKAGRRVVIAAHGNSLRALVKFLEGISDDEIMELEIPTGVPLVY 213          
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA_LISW6 (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=gpmA PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 3.099e-28
Identity = 60/145 (41.38%), Postives = 94/145 (64.83%), Query Frame = -1
Query:  518 EDPMKQSIPVVTAWQLNERMYG*LQGLNKQETADRYGKEQVHVWRRSYD-IPP------------------------PNGESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLY 877
            E+  +  +PV  +W+LNER YG LQGLNKQETA++YG +QV  WRRSYD +PP                        P+GE+L++  +R + Y+ D I P+++ G+ V+IAAHGNSLR+++ +L+ ++  E++ LE+ TG+P++Y
Sbjct:   69 EESDQMWVPVNKSWRLNERHYGALQGLNKQETAEKYGADQVQKWRRSYDTLPPLLEENDERQAKNDRRYQLLDTHAIPSGENLKVTLERVIPYWMDTIAPEIKEGRRVVIAAHGNSLRALVKFLEGISDDEIMELEIPTGVPLVY 213          
The following BLAST results are available for this feature:
BLAST of CX047083 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 435
Match NameE-valueIdentityDescription
GPMA_RHOCS8.155e-2944.932,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_RHIL38.155e-2953.702,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_BRASO8.155e-2943.802,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_METSB1.065e-2853.702,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_ALTMD1.065e-2842.282,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_CORJK1.391e-2837.772,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_BRASB1.391e-2843.802,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_MESSB1.817e-2853.332,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_LISIN2.373e-2841.382,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_LISW63.099e-2841.382,3-bisphosphoglycerate-dependent phosphoglycerate... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_12A07_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12A07-A13-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047083 ID=CX047083; Name=CX047083; organism=Citrus sinensis; type=EST; length=919bp
TTTTTAATCGGAAGGAAAAGCTTCTATTTCCTGTCAATTCTTATTTCTTC
AAAGTATTTGCATAACTCCATTACAGACATACAAGAAAATACAGCACCCA
AAATTCTCTTAGTTCAGTCCCTCTTATACATATCTTTCTTTCACACTGAA
ACATACATCTATCTCTTAGTTCATGCCAGAGAGATGTTGGATTGATCAAC
TACTGAAAAAGTACAAAAGGCAATAGCCACTACCCAGCCTTCTGACCCAC
TATCAAGAACTACATCAATACATTTCCTGAAACTAGCTTTTGCACATGTG
CGTTTCATTCCCTTGCAATCTAGTAATGAAACCAGCAGGACAGCAGAAGT
GAAGCAATGGGAATCGGGAGGTAAGCCCCTAAGCTTCAAAGATGTTAATG
CAACATCTCGTCTAACTTCTGTCTATATTGAGCTAAACGCCGTGTATAAG
CATAGACTCCAGCCTCCGCTGGTCCCGCTGGACTTCCCCTTCTAATGAAC
TTTCCCTCTTTGAATATGTAAAGCATGGGTATTCCAGTTGATAGTTCTAA
ACTGATCACCTCTTGGGAAGTTAATTTGTCAAGATACATAATGATGGACC
TCAGTGAATTCCCATGGGCAGCAATCATTACATTCTTTCCTGATTGAAGT
TGCGGTTCAATCTGATCTTTAAAATAAGCAACGGCTCTTTGAGCACACAT
TTCCAAGCTCTCACCATTTGGTGGAGGAATGTCATAACTCCGACGCCACA
CGTGGACTTGTTCCTTTCCATATCTATCAGCCGTTTCCTGCTTATTTAGA
CCCTGTAATTACCCATACATTCTTTCATTCAATTGCCAAGCTGTTACAAC
GGGAATGGACTGCTTCATGGGGTCTTCGCTGAAGATCTGACTCCAGGTCC
TTGCCTGTTCACTTTCATT
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