CX047083

Overview
NameCX047083
Unique NameCX047083
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length919
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA_NOCSJ (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Nocardioides sp. (strain BAA-499 / JS614) GN=gpmA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.760e-23
Identity = 54/137 (39.42%), Postives = 83/137 (60.58%), Query Frame = -1
Query:  518 IPVVTAWQLNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPP------------------------PNGESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLY 856
            IPV  +W+LNER YG LQG NK+ET + YG+EQ  +WRRS+D+PP                        P+ E L+    R + Y++  I P L++G  V+IAAHGNSLR+++ +LD ++ +++  L + TG+P++Y
Sbjct:   78 IPVRRSWRLNERHYGALQGKNKKETLEAYGEEQFMLWRRSFDVPPPPIEEDSEFSQFGLPQYAGLGDDMPHTECLKDVIARFLPYWESDIVPDLRAGHTVLIAAHGNSLRALVKHLDGISDEDIAGLNIPTGMPLVY 214          
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA_BACFR (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Bacteroides fragilis GN=gpmA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.760e-23
Identity = 60/149 (40.27%), Postives = 84/149 (56.38%), Query Frame = -1
Query:  506 DPMKQS-IPVVTAWQLNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPP-------------------------PNGESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLYIFKE 874
            D M Q  IPV  +W+LNE+ YG LQGLNK ETA +YG EQV +WRRSYDI P                         P  ESL+   +R + Y+K  I P L++   +++ AHGNSLR II +L  ++ +E++ L L T +P ++ F +
Sbjct:   70 DRMDQDWIPVEKSWRLNEKHYGDLQGLNKSETAAKYGDEQVLIWRRSYDIAPNALSEDDPRNPRFENRYQEVPDAELPRTESLKDTIERIMPYWKCIIFPNLKTADEILVVAHGNSLRGIIKHLKHISDEEIVKLNLPTAVPYVFEFSD 218          
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA_BACFN (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=gpmA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.760e-23
Identity = 60/149 (40.27%), Postives = 84/149 (56.38%), Query Frame = -1
Query:  506 DPMKQS-IPVVTAWQLNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPP-------------------------PNGESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLYIFKE 874
            D M Q  IPV  +W+LNE+ YG LQGLNK ETA +YG EQV +WRRSYDI P                         P  ESL+   +R + Y+K  I P L++   +++ AHGNSLR II +L  ++ +E++ L L T +P ++ F +
Sbjct:   70 DRMDQDWIPVEKSWRLNEKHYGDLQGLNKSETAAKYGDEQVLIWRRSYDIAPNALSEDDPRNPRFENRYQEVPDAELPRTESLKDTIERIMPYWKCIIFPNLKTADEILVVAHGNSLRGIIKHLKHISDEEIVKLNLPTAVPYVFEFSD 218          
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA2_BACTN (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase 2 OS=Bacteroides thetaiotaomicron GN=gpmA2 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.760e-23
Identity = 57/142 (40.14%), Postives = 81/142 (57.04%), Query Frame = -1
Query:  506 IPVVTAWQLNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPP-------------------------PNGESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLYIFKE 856
            IPV  +W+LNE+ YG LQGLNK ETA++YG+EQV +WRRSYDI P                         P  ESL+    R + Y++  I P L+    +++ AHGNSLR II +L  ++ +++I L L T +P ++ F E
Sbjct:   77 IPVEKSWRLNEKHYGDLQGLNKAETAEKYGEEQVLIWRRSYDIAPNPLSESDLRNPRFDYRYHEVSDAELPRTESLKDTIDRIMPYWESDIFPALKDAHTLLVVAHGNSLRGIIKHLKHISDEDIIKLNLPTAVPYVFEFDE 218          
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA_STRS2 (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Streptococcus suis (strain 98HAH33) GN=gpmA PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.298e-23
Identity = 53/142 (37.32%), Postives = 86/142 (60.56%), Query Frame = -1
Query:  506 IPVVTAWQLNERMYG*LQGLNKQETADRYGKEQVHVWRRSYD-IPP------------------------PNGESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLYIFKE 856
            +PV  +W+LNER YG L GLNK E A  +G EQVH+WRRSYD +PP                        P+ E+L++  +RA+ +++D+I P L+ GKNV + AHGNS+R+++ ++ +L+  E++ +E+    P+++   E
Sbjct:   77 VPVEKSWRLNERHYGGLTGLNKAEAAAEFGDEQVHIWRRSYDTLPPEMAKDHEHSAHTDRRYAHLDDSVIPDAENLKVTLERALPFWEDKIAPALKDGKNVFVGAHGNSIRALVKHIKQLSDDEIMDVEIPNFPPLVFELDE 218          
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA_PORGI (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Porphyromonas gingivalis GN=gpmA PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 3.002e-23
Identity = 58/142 (40.85%), Postives = 80/142 (56.34%), Query Frame = -1
Query:  506 IPVVTAWQLNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPP-------------------------PNGESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLYIFKE 856
            IPV   W+LNE+ YG LQGLNK ETA++YG EQV +WRRSYD+PP                         P  E+L     R + Y+ + I P L+    V++AAHGNSLR II  L  ++ +++ISL L T +P ++ F +
Sbjct:   77 IPVEKTWRLNEKHYGMLQGLNKAETAEKYGDEQVLIWRRSYDVPPTPMEKEDPRSPFMDPRYKGVCEKDLPLTEALCDTVNRILPYWNETIFPTLKEHDEVLVAAHGNSLRGIIKVLKNISDEDIISLNLPTAVPYVFEFDD 218          
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA_PORG3 (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=gpmA PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 3.002e-23
Identity = 58/142 (40.85%), Postives = 80/142 (56.34%), Query Frame = -1
Query:  506 IPVVTAWQLNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPP-------------------------PNGESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLYIFKE 856
            IPV   W+LNE+ YG LQGLNK ETA++YG EQV +WRRSYD+PP                         P  E+L     R + Y+ + I P L+    V++AAHGNSLR II  L  ++ +++ISL L T +P ++ F +
Sbjct:   77 IPVEKTWRLNEKHYGMLQGLNKAETAEKYGDEQVLIWRRSYDVPPTPMEKEDPRSPFMDPRYKGVCEKDLPLTEALCDTVNRILPYWNETIFPTLKEHDEVLVAAHGNSLRGIIKVLKNISDEDIISLNLPTAVPYVFEFDD 218          
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA_LEIXX (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Leifsonia xyli subsp. xyli GN=gpmA PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 3.002e-23
Identity = 52/137 (37.96%), Postives = 80/137 (58.39%), Query Frame = -1
Query:  518 IPVVTAWQLNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPP------------------------PNGESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLY 856
            IPVV +W+LNER YG LQGL+K ET ++YG EQ  +WRRS+D+PP                        P  E L+    R + +++  I   L +GK V++ AHGNSLR+++ +LD ++  ++  L + TG+P++Y
Sbjct:   80 IPVVRSWRLNERHYGALQGLDKAETLEKYGPEQFQLWRRSFDVPPPPLADDSEWSQADDPRYADLGADLPRTECLKDVIARMLPFWESDITTSLSAGKTVLVTAHGNSLRALVKHLDGISDDDIAELNIPTGVPLVY 216          
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA_RHOSR (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Rhodococcus sp. (strain RHA1) GN=gpmA PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.920e-23
Identity = 55/140 (39.29%), Postives = 79/140 (56.43%), Query Frame = -1
Query:  506 IPVVTAWQLNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPPPN-----------------------GESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLYIFKE 856
            IPV+  W+LNER YG LQG NK +  ++YG EQ  +WRRSYD PPP                         E L+    R + Y++D I   L++GK V+I AHGNSLR+++ +LD ++ +++  L + TGIP+ Y   E
Sbjct:   82 IPVIRDWRLNERHYGALQGRNKAQVKEKYGDEQFMLWRRSYDTPPPPIEAGSEYSQDTDPRYANLDKVPLTECLKDVVVRLIPYWEDTISADLKAGKTVLITAHGNSLRALVKHLDGISDEDIAGLNIPTGIPLRYDLDE 221          
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA_METPE (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=gpmA PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.920e-23
Identity = 55/138 (39.86%), Postives = 77/138 (55.80%), Query Frame = -1
Query:  518 IPVVTAWQLNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPPPN-------------------------GESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLY 856
            +PV   W+LNER YG LQGL+K+ET +++GK+QV  WRR Y + PP                           ESLE    R V Y+ + I P LQ GK ++IAAHGNS+R+++ YLD +    +  L + TG P++Y
Sbjct:   77 LPVHHTWRLNERHYGALQGLDKRETTEKFGKDQVQAWRRGYAVRPPALEETDPRHPRFDPRYAGLKKDDLPATESLEDTLARVVPYWNETIVPTLQDGKRILIAAHGNSIRALVKYLDGVPDDVITGLNIPTGFPLVY 214          
The following BLAST results are available for this feature:
BLAST of CX047083 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 435
Match NameE-valueIdentityDescription
GPMA_NOCSJ1.760e-2339.422,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_BACFR1.760e-2340.272,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_BACFN1.760e-2340.272,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA2_BACTN1.760e-2340.142,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_STRS22.298e-2337.322,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_PORGI3.002e-2340.852,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_PORG33.002e-2340.852,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_LEIXX3.002e-2337.962,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_RHOSR3.920e-2339.292,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_METPE3.920e-2339.862,3-bisphosphoglycerate-dependent phosphoglycerate... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_12A07_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12A07-A13-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047083 ID=CX047083; Name=CX047083; organism=Citrus sinensis; type=EST; length=919bp
TTTTTAATCGGAAGGAAAAGCTTCTATTTCCTGTCAATTCTTATTTCTTC
AAAGTATTTGCATAACTCCATTACAGACATACAAGAAAATACAGCACCCA
AAATTCTCTTAGTTCAGTCCCTCTTATACATATCTTTCTTTCACACTGAA
ACATACATCTATCTCTTAGTTCATGCCAGAGAGATGTTGGATTGATCAAC
TACTGAAAAAGTACAAAAGGCAATAGCCACTACCCAGCCTTCTGACCCAC
TATCAAGAACTACATCAATACATTTCCTGAAACTAGCTTTTGCACATGTG
CGTTTCATTCCCTTGCAATCTAGTAATGAAACCAGCAGGACAGCAGAAGT
GAAGCAATGGGAATCGGGAGGTAAGCCCCTAAGCTTCAAAGATGTTAATG
CAACATCTCGTCTAACTTCTGTCTATATTGAGCTAAACGCCGTGTATAAG
CATAGACTCCAGCCTCCGCTGGTCCCGCTGGACTTCCCCTTCTAATGAAC
TTTCCCTCTTTGAATATGTAAAGCATGGGTATTCCAGTTGATAGTTCTAA
ACTGATCACCTCTTGGGAAGTTAATTTGTCAAGATACATAATGATGGACC
TCAGTGAATTCCCATGGGCAGCAATCATTACATTCTTTCCTGATTGAAGT
TGCGGTTCAATCTGATCTTTAAAATAAGCAACGGCTCTTTGAGCACACAT
TTCCAAGCTCTCACCATTTGGTGGAGGAATGTCATAACTCCGACGCCACA
CGTGGACTTGTTCCTTTCCATATCTATCAGCCGTTTCCTGCTTATTTAGA
CCCTGTAATTACCCATACATTCTTTCATTCAATTGCCAAGCTGTTACAAC
GGGAATGGACTGCTTCATGGGGTCTTCGCTGAAGATCTGACTCCAGGTCC
TTGCCTGTTCACTTTCATT
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