CX047083

Overview
NameCX047083
Unique NameCX047083
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length919
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA_DICNV (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Dichelobacter nodosus (strain VCS1703A) GN=gpmA PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.920e-20
Identity = 57/142 (40.14%), Postives = 79/142 (55.63%), Query Frame = -1
Query:  506 IPVVTAWQLNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPP-------------------------PNGESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLYIFKE 856
            I V   W+LNE+ YG LQGLNK+ETA +YG+EQV +WRRS+D  P                         P  ESL+    R + Y++  I+P L +   V+I AHGNSLR+II +L  ++  E+  L L TGIP ++ F +
Sbjct:   77 IDVHKTWRLNEKHYGALQGLNKKETAAQYGQEQVLLWRRSFDTAPAALEYSDARAPHNDRRYQRVARQDLPLTESLKDTIARIMPYWEVVIKPVLIAENTVLIVAHGNSLRAIIKHLKGISETEITDLNLPTGIPYVFEFDD 218          
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA_NAUPA (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Nautilia profundicola (strain ATCC BAA-1463 / DSM 18972 / AmH) GN=gpmA PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.180e-19
Identity = 52/141 (36.88%), Postives = 78/141 (55.32%), Query Frame = -1
Query:  491 WQLNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPPP-------------------------NGESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLYIFKEGKFIR 838
            W+ NER YG L GLNK E     G+E+  ++RRSYD+PPP                         N ESL+    RA+A F +++ P L  GK+V+I AHGN++R ++  LD ++ +++   E++TGIP +Y F E   I+
Sbjct:   83 WRFNERHYGALTGLNKDEVKAEVGEEKFLLYRRSYDVPPPPLSEDDKRHPRFDPHYKNFPVELLPNTESLKDNQIRAMAAFHERVAPLLVEGKDVLITAHGNTIRGMVKELDGISDEDIPKFEIATGIPRVYEFDEALHIK 223          
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA1_LACSS (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase 1 OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=gpmA1 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.434e-19
Identity = 52/147 (35.37%), Postives = 84/147 (57.14%), Query Frame = -1
Query:  512 SQIFSEDPMKQSIPVVTAWQLNERMYG*LQGLNKQETADRYGKEQVHVWRRSYD-IPP-------------------PNGESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLYIF 892
            S I  E+  + ++P+  +W+LNER YG L+GLNK  T   +G  QV  WRRSY  +PP                   P GESL    QR + Y++DQ+ P L +G++ +I AHG++LR++I  +++++ Q +  +E++ G  + Y F
Sbjct:   65 SYIVLEELDQLALPMTKSWRLNERHYGALRGLNKDTTRTIFGVHQVARWRRSYTALPPLLIRSSTARRYRLVPRKSRPRGESLAQATQRLLPYWQDQVVPGLLAGQDQLIVAHGSTLRALIKVIEQISDQAIDGVEVANGEALYYQF 211          
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA2_LACJO (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase 2 OS=Lactobacillus johnsonii GN=gpmA2 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 7.651e-19
Identity = 45/135 (33.33%), Postives = 77/135 (57.04%), Query Frame = -1
Query:  512 IPVVTAWQLNERMYG*LQGLNKQETADRYGKEQVHVWRRSYD-IPP-------------------PNGESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLYIF 856
            +P+   W+LNER YG L+G+NK  +   +G  QV  WRR +D +PP                   P GESL    +R + YF D I P+L +G + ++ AHG+SLR++I  ++ +++++++ +E+    P++Y F
Sbjct:   82 LPITKTWRLNERHYGALRGINKDVSKKIFGTNQVLEWRRGFDSVPPLLTQPVQDRRYQKYDMRLMPQGESLHQTQERLMPYFWDHIAPELMAGHDQLVVAHGSSLRALIKKIEDISNEDIVKVEVPNAEPIVYTF 216          
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA1_NITMU (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase 1 OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=gpmA1 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.344e-14
Identity = 48/143 (33.57%), Postives = 73/143 (51.05%), Query Frame = -1
Query:  518 MKQSIPVVTA-WQLNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPPPN-------------------------GESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLY 868
            M Q  PVV   W+LNER YG L+G+N+ +   +YG   +   +  +D PPP                          GES+     R + Y++  I P++Q GK V+I AH + LR +IM LD L+  ++I L ++TG P++Y
Sbjct:   72 MGQDEPVVQRNWRLNERHYGALEGINRWKAIRKYGFCPILSSQCRFDAPPPPLDPADIRFPGNQACYATIDPGELPLGESMRQAFARMLPYWQQTITPEIQRGKRVLIVAHKHILRGLIMQLDGLSIIQLIKLSVATGRPLIY 214          
The following BLAST results are available for this feature:
BLAST of CX047083 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 435
Match NameE-valueIdentityDescription
GPMA_DICNV6.920e-2040.142,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_NAUPA1.180e-1936.882,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA1_LACSS3.434e-1935.372,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA2_LACJO7.651e-1933.332,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA1_NITMU4.344e-1433.572,3-bisphosphoglycerate-dependent phosphoglycerate... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_12A07_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12A07-A13-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047083 ID=CX047083; Name=CX047083; organism=Citrus sinensis; type=EST; length=919bp
TTTTTAATCGGAAGGAAAAGCTTCTATTTCCTGTCAATTCTTATTTCTTC
AAAGTATTTGCATAACTCCATTACAGACATACAAGAAAATACAGCACCCA
AAATTCTCTTAGTTCAGTCCCTCTTATACATATCTTTCTTTCACACTGAA
ACATACATCTATCTCTTAGTTCATGCCAGAGAGATGTTGGATTGATCAAC
TACTGAAAAAGTACAAAAGGCAATAGCCACTACCCAGCCTTCTGACCCAC
TATCAAGAACTACATCAATACATTTCCTGAAACTAGCTTTTGCACATGTG
CGTTTCATTCCCTTGCAATCTAGTAATGAAACCAGCAGGACAGCAGAAGT
GAAGCAATGGGAATCGGGAGGTAAGCCCCTAAGCTTCAAAGATGTTAATG
CAACATCTCGTCTAACTTCTGTCTATATTGAGCTAAACGCCGTGTATAAG
CATAGACTCCAGCCTCCGCTGGTCCCGCTGGACTTCCCCTTCTAATGAAC
TTTCCCTCTTTGAATATGTAAAGCATGGGTATTCCAGTTGATAGTTCTAA
ACTGATCACCTCTTGGGAAGTTAATTTGTCAAGATACATAATGATGGACC
TCAGTGAATTCCCATGGGCAGCAATCATTACATTCTTTCCTGATTGAAGT
TGCGGTTCAATCTGATCTTTAAAATAAGCAACGGCTCTTTGAGCACACAT
TTCCAAGCTCTCACCATTTGGTGGAGGAATGTCATAACTCCGACGCCACA
CGTGGACTTGTTCCTTTCCATATCTATCAGCCGTTTCCTGCTTATTTAGA
CCCTGTAATTACCCATACATTCTTTCATTCAATTGCCAAGCTGTTACAAC
GGGAATGGACTGCTTCATGGGGTCTTCGCTGAAGATCTGACTCCAGGTCC
TTGCCTGTTCACTTTCATT
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