CX047083

Overview
NameCX047083
Unique NameCX047083
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length919
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: PGAM_DICDI (Probable phosphoglycerate mutase OS=Dictyostelium discoideum GN=gpmA PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 9.017e-28
Identity = 61/142 (42.96%), Postives = 87/142 (61.27%), Query Frame = -1
Query:  506 IPVVTAWQLNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPP-------------------------PNGESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLYIFKE 856
            IPV   W+LNERMYG LQGLNK ETA +YG++QV +WRRSYDIPP                         P  E L+   +R +  + D I P ++SG+ V+IAAHGNS+R+++ YLD +   +++S+++ TGIP++Y   E
Sbjct:   78 IPVSRQWRLNERMYGSLQGLNKSETAAKYGEDQVLIWRRSYDIPPPALEESDERYPGNDPRYAKLDKSDLPKTECLKDTVERFLPLWNDTIAPTIKSGQKVLIAAHGNSIRALVKYLDNIADDKIVSMDIPTGIPLVYELDE 219          
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA_ZYMMO (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Zymomonas mobilis GN=gpmA PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 9.017e-28
Identity = 59/135 (43.70%), Postives = 86/135 (63.70%), Query Frame = -1
Query:  518 IPVVTAWQLNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPP----------------------PNGESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLY 856
            +P    W+LNER YG L GLNK ETA ++G+EQVH+WRRSYD+PP                      P  ESL+    R + Y++++I P+L++GK V+I AHGNSLR+++ +L KL+ +E++  EL TG P++Y
Sbjct:   77 VPTEKDWRLNERHYGGLTGLNKAETAAKHGEEQVHIWRRSYDVPPPPMEKGSKFDLSGDRRYDGVKIPETESLKDTVARVLPYWEERIAPELKAGKRVLIGAHGNSLRALVKHLSKLSDEEIVKFELPTGQPLVY 211          
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA_OCHA4 (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=gpmA PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.178e-27
Identity = 54/105 (51.43%), Postives = 78/105 (74.29%), Query Frame = -1
Query:  518 LNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPPPNGESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLY 832
            LNER YG L GLNK +   ++G+EQVH+WRRSYD+PPP GESL+    R   Y+   ++P +  G+ V++AAHGNSLR++IM LD LT ++++  EL+TG+P++Y
Sbjct:   86 LNERDYGDLSGLNKDDARAKWGEEQVHIWRRSYDVPPPGGESLKDTGARVWPYYLHTVQPHVLRGETVLVAAHGNSLRALIMALDGLTPEQILKQELNTGVPVVY 190          
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA_ENTFA (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Enterococcus faecalis GN=gpmA PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.178e-27
Identity = 57/138 (41.30%), Postives = 92/138 (66.67%), Query Frame = -1
Query:  518 IPVVTAWQLNERMYG*LQGLNKQETADRYGKEQVHVWRRSYD-IPP------------------------PNGESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLY 856
            +P + +W+LNER YG LQGLNK+ETA++YG EQVH+WRRSYD +PP                        P GE+L++  +RA+ +++D+I P L+  K V++AAHGNSLR++  +++ ++ ++++ LE+ TG P++Y
Sbjct:   77 VPQIKSWRLNERHYGKLQGLNKKETAEKYGDEQVHIWRRSYDTLPPLMEATDEGSAANDRRYAMLDQRDIPGGENLKVTLERALPFWQDEIAPALKDNKTVLVAAHGNSLRALAKHIEGISDEDIMDLEIPTGKPLVY 214          
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA2_NITMU (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase 2 OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=gpmA2 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.178e-27
Identity = 67/150 (44.67%), Postives = 91/150 (60.67%), Query Frame = -1
Query:  503 DPMKQS-IPVVTAWQLNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPPPN-------------------------GESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLYIFKEG 874
            D M Q  IPV ++W+LNER YG LQGLNK ETA  YG+EQV +WRRSYDI PP                           E L+    R + Y+++ I PQ++S K+V+I AHGNSLR+++MYLD L+  E++ L + TGIP++Y   +G
Sbjct:   70 DEMDQMWIPVESSWRLNERHYGALQGLNKLETAVAYGEEQVLIWRRSYDIRPPALTPDDPRYPGCDPRYRNLPKQDIPLTECLQDTVSRFLPYWRESIAPQVKSDKSVLITAHGNSLRALVMYLDNLSEGEIMELNIPTGIPLVYELDDG 219          
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA_LISMF (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Listeria monocytogenes serotype 4b (strain F2365) GN=gpmA PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.538e-27
Identity = 60/145 (41.38%), Postives = 92/145 (63.45%), Query Frame = -1
Query:  518 EDPMKQSIPVVTAWQLNERMYG*LQGLNKQETADRYGKEQVHVWRRSYD-IPP------------------------PNGESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLY 877
            E+  +  +PV  +W+LNER YG LQGLNKQETA++YG +QV  WRRSYD +PP                        P GE+L++  +R + Y+ D I P+++ G+ V+IAAHGNSLR+++ +L+ +   E++ LE+ TG+P++Y
Sbjct:   69 EESDQMWVPVHKSWRLNERHYGALQGLNKQETAEKYGADQVQKWRRSYDTLPPLLEENDERQAKNDRRYQLLDTHAIPAGENLKVTLERVIPYWMDTIAPEIKEGRRVVIAAHGNSLRALVKFLEGIGDDEIMDLEIPTGVPLVY 213          
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA_LISMC (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=gpmA PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.538e-27
Identity = 60/145 (41.38%), Postives = 92/145 (63.45%), Query Frame = -1
Query:  518 EDPMKQSIPVVTAWQLNERMYG*LQGLNKQETADRYGKEQVHVWRRSYD-IPP------------------------PNGESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLY 877
            E+  +  +PV  +W+LNER YG LQGLNKQETA++YG +QV  WRRSYD +PP                        P GE+L++  +R + Y+ D I P+++ G+ V+IAAHGNSLR+++ +L+ +   E++ LE+ TG+P++Y
Sbjct:   69 EESDQMWVPVHKSWRLNERHYGALQGLNKQETAEKYGADQVQKWRRSYDTLPPLLEENDERQAKNDRRYQLLDTHAIPAGENLKVTLERVIPYWMDTIAPEIKEGRRVVIAAHGNSLRALVKFLEGIGDDEIMDLEIPTGVPLVY 213          
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA_DESVH (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=gpmA PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.538e-27
Identity = 63/137 (45.99%), Postives = 86/137 (62.77%), Query Frame = -1
Query:  518 PVVTAWQLNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPPPN-------------------------GESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLY 853
            PV   W+LNER YG LQGL+K+ETA R+G++QV VWRRSYD+PPP                          GESLE    R + Y+ D I P L +G++V++AAHGNSLR+++M+LD L  ++V  L++ TG+P LY
Sbjct:   78 PVRKHWRLNERHYGALQGLDKRETAARHGEDQVFVWRRSYDVPPPVIAPDDPKHPVHDPRYADVPPDVLPCGESLEATVARVLPYWYDAIAPDLMAGRDVLVAAHGNSLRALVMHLDGLDREDVSRLDIPTGLPRLY 214          
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA_CHLT3 (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=gpmA PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.538e-27
Identity = 61/140 (43.57%), Postives = 87/140 (62.14%), Query Frame = -1
Query:  518 QSIPVVTAWQLNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPPPN-------------------------GESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLY 862
            Q IPV   W+LNER YG LQGLNK ETA+++G+EQV +WRRSYD PPP                           E L+   +R + Y+ + I P ++SGK V+IAAHGNSLRS++ YLD ++ ++++ L + TG+P++Y
Sbjct:   75 QWIPVNKTWRLNERHYGALQGLNKSETAEKFGEEQVLIWRRSYDTPPPALEKSDERYPGHDPRYKDLTEAELPLTECLKDTVERFLPYWHETIAPTIKSGKRVIIAAHGNSLRSLVKYLDNISDEDIVGLNIPTGMPLVY 214          
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA_BARBK (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=gpmA PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.538e-27
Identity = 59/133 (44.36%), Postives = 87/133 (65.41%), Query Frame = -1
Query:  512 EQARTWSQIFSEDPMKQSIPVVTAWQLNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPPPNGESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLYIF 910
            ++A+  +Q   E   +  + ++    LNER YG L GLNK +   R+G+EQVH+WRRSY I PPNGESL     R   Y+   I+P +   + V+I AHGNSLR++IM L+ L+S+E++  EL+TG+P++Y F
Sbjct:   60 QRAQKTAQHILEQMAQPDLQLIKNSALNERDYGDLSGLNKDDARQRWGQEQVHIWRRSYTIAPPNGESLRDTGARVWPYYFHHIQPHILRSQTVLIVAHGNSLRALIMVLEGLSSEEIVLQELATGVPIIYEF 192          
The following BLAST results are available for this feature:
BLAST of CX047083 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 435
Match NameE-valueIdentityDescription
PGAM_DICDI9.017e-2842.96Probable phosphoglycerate mutase OS=Dictyostelium ... [more]
GPMA_ZYMMO9.017e-2843.702,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_OCHA41.178e-2751.432,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_ENTFA1.178e-2741.302,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA2_NITMU1.178e-2744.672,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_LISMF1.538e-2741.382,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_LISMC1.538e-2741.382,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_DESVH1.538e-2745.992,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_CHLT31.538e-2743.572,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_BARBK1.538e-2744.362,3-bisphosphoglycerate-dependent phosphoglycerate... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS09_12A07_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12A07-A13-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047083 ID=CX047083; Name=CX047083; organism=Citrus sinensis; type=EST; length=919bp
TTTTTAATCGGAAGGAAAAGCTTCTATTTCCTGTCAATTCTTATTTCTTC
AAAGTATTTGCATAACTCCATTACAGACATACAAGAAAATACAGCACCCA
AAATTCTCTTAGTTCAGTCCCTCTTATACATATCTTTCTTTCACACTGAA
ACATACATCTATCTCTTAGTTCATGCCAGAGAGATGTTGGATTGATCAAC
TACTGAAAAAGTACAAAAGGCAATAGCCACTACCCAGCCTTCTGACCCAC
TATCAAGAACTACATCAATACATTTCCTGAAACTAGCTTTTGCACATGTG
CGTTTCATTCCCTTGCAATCTAGTAATGAAACCAGCAGGACAGCAGAAGT
GAAGCAATGGGAATCGGGAGGTAAGCCCCTAAGCTTCAAAGATGTTAATG
CAACATCTCGTCTAACTTCTGTCTATATTGAGCTAAACGCCGTGTATAAG
CATAGACTCCAGCCTCCGCTGGTCCCGCTGGACTTCCCCTTCTAATGAAC
TTTCCCTCTTTGAATATGTAAAGCATGGGTATTCCAGTTGATAGTTCTAA
ACTGATCACCTCTTGGGAAGTTAATTTGTCAAGATACATAATGATGGACC
TCAGTGAATTCCCATGGGCAGCAATCATTACATTCTTTCCTGATTGAAGT
TGCGGTTCAATCTGATCTTTAAAATAAGCAACGGCTCTTTGAGCACACAT
TTCCAAGCTCTCACCATTTGGTGGAGGAATGTCATAACTCCGACGCCACA
CGTGGACTTGTTCCTTTCCATATCTATCAGCCGTTTCCTGCTTATTTAGA
CCCTGTAATTACCCATACATTCTTTCATTCAATTGCCAAGCTGTTACAAC
GGGAATGGACTGCTTCATGGGGTCTTCGCTGAAGATCTGACTCCAGGTCC
TTGCCTGTTCACTTTCATT
back to top