CX047083

Overview
NameCX047083
Unique NameCX047083
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length919
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: PGAM2_BOVIN (Phosphoglycerate mutase 2 OS=Bos taurus GN=PGAM2 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.623e-27
Identity = 65/153 (42.48%), Postives = 92/153 (60.13%), Query Frame = -1
Query:  518 WSQIFSEDPMKQSIPVVTAWQLNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPP---------------------------PNGESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLY 895
            W+ +   D M   +PVV  W+LNER YG L GLNK ETA ++G+EQV +WRRS+DIPP                           P  ESL+    RA+ ++ D+I PQ+++GK V+IAAHGNSLR I+ +L+ ++ Q ++ L L TGIP++Y
Sbjct:   68 WTILDGTDQMW--LPVVRTWRLNERHYGGLTGLNKAETAAKHGEEQVKIWRRSFDIPPPPMDEKHPYYKSISKERRYAGLKAGELPTCESLKDTIARALPFWNDEIAPQIKAGKRVLIAAHGNSLRGIVKHLEGMSDQAIMELNLPTGIPIVY 218          
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA_ALHEH (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=gpmA PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.623e-27
Identity = 62/138 (44.93%), Postives = 84/138 (60.87%), Query Frame = -1
Query:  518 IPVVTAWQLNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPP-------------------------PNGESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLY 856
            IPV  AWQLNER YG L GLNK ETA+ YG EQVH+WRRSYD PP                         P  ESL +  +R + Y+ ++I P L+   NV+IAAHGNS+R++I +LD L  + ++ +E++TG P++Y
Sbjct:   77 IPVTKAWQLNERHYGALTGLNKAETAEEYGAEQVHIWRRSYDTPPPPLDETSPYHPRHDPRYASLKPEQLPATESLALTLERVLPYWNERIVPTLRDCDNVLIAAHGNSIRALIKHLDGLDDEAIMKVEIATGDPLVY 214          
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA_METHJ (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=gpmA PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.426e-27
Identity = 59/138 (42.75%), Postives = 84/138 (60.87%), Query Frame = -1
Query:  518 IPVVTAWQLNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPP-------------------------PNGESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLY 856
            IPV+  W+LNER YG L GLNK ET ++YG++QVH+WRRSYDIPP                         P  E L+    R + Y+ D+I P ++SGK V+I AHGNSLR+++ +LD ++  ++  L + TGIP++Y
Sbjct:   77 IPVIRTWRLNERHYGALTGLNKIETVEKYGEQQVHIWRRSYDIPPPAYTPDNLDNPSYHRRYQEIKRSDLPMTECLKDTVARFIPYWNDEIAPVIRSGKRVLITAHGNSLRALVKHLDNISDTDIPDLNIPTGIPLVY 214          
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA_DESVV (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=gpmA PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.426e-27
Identity = 63/137 (45.99%), Postives = 85/137 (62.04%), Query Frame = -1
Query:  518 PVVTAWQLNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPPPN-------------------------GESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLY 853
            PV   W+LNER YG LQGL+K+ETA R+G++QV VWRRSYD+PPP                          GESLE    R + Y+ D I P L +G++V++AAHGNSLR+++M+LD L  + V  L++ TG+P LY
Sbjct:   78 PVRKHWRLNERHYGALQGLDKRETAARHGEDQVFVWRRSYDVPPPVIAPDDPKHPVHDPRYADVPPDVLPCGESLEATVARVLPYWYDAIAPDLMAGRDVLVAAHGNSLRALVMHLDGLDREAVSRLDIPTGLPRLY 214          
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA_COREF (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Corynebacterium efficiens GN=gpmA PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.426e-27
Identity = 63/148 (42.57%), Postives = 88/148 (59.46%), Query Frame = -1
Query:  485 IPVVTAWQLNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPP-----------------------PNGESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLY-IFKEGKFIRRG 856
            IPVV  W+LNER YG LQGLNK ET D+YG EQ   WRRSY  PP                       P  E L+   +R + YF+++I P+++ G+NV+IAAHGNSLR+++ +LD ++  ++  L + TGIP++Y I  EG  +  G
Sbjct:   81 IPVVRDWRLNERHYGALQGLNKAETKDKYGDEQYMAWRRSYGTPPPELADDAEYSQAGDVRYKDLESVPRTECLKDVVERFIPYFEEEILPRVKKGENVLIAAHGNSLRALVKHLDNISDDDIAELNIPTGIPLVYEITPEGTVVNPG 228          
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA_CHLTE (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Chlorobium tepidum GN=gpmA PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.426e-27
Identity = 61/138 (44.20%), Postives = 83/138 (60.14%), Query Frame = -1
Query:  518 IPVVTAWQLNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPP-------------------------PNGESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLY 856
            IPV   W+LNER YG LQGLNK ETA R+G EQV +WRRSYD PP                         P  E L+    R + Y+ + I PQ++ GKNV+I AHGNSLR+++ YLD ++ ++++ L + TGIP++Y
Sbjct:   77 IPVTKNWRLNERHYGALQGLNKAETAQRHGDEQVLIWRRSYDTPPPALTESDEFWPGKDPRYASLSSQELPATECLKDTVARFLPYWHETIAPQIRDGKNVIITAHGNSLRALVKYLDNISDEDIVGLNIPTGIPLVY 214          
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA_BRAJA (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Bradyrhizobium japonicum GN=gpmA PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.426e-27
Identity = 54/116 (46.55%), Postives = 83/116 (71.55%), Query Frame = -1
Query:  518 KQSIPVVTAWQLNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPPPNGESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLY 865
            ++ +P      LNER YG L GLNK +   ++G++QV +WRRSYD+PPP GESL+    RA+ Y+  +I P + +GK  ++AAHGNSLR++IM L+KL+ + ++  EL+TG+P++Y
Sbjct:   76 QKGLPTEKNLALNERDYGDLSGLNKDDARKKWGEDQVLIWRRSYDVPPPGGESLKDTLARALPYYVQEILPSVLNGKRTLVAAHGNSLRALIMVLEKLSPEGILKRELATGVPIIY 191          
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA_OLICO (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=gpmA PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 4.475e-27
Identity = 56/134 (41.79%), Postives = 90/134 (67.16%), Query Frame = -1
Query:  518 NESEQARTWSQIFSEDPMKQSIPVVTAWQLNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPPPNGESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLY 919
            +E  +A+    +  E+  + S+PV +   LNER YG L GLNK +   ++G+EQVH+WRRSYD+ PP GESL+    R + Y+  +I P +  G+  ++ AHGNSLR++IM L++L+ + ++  EL+TG+P++Y
Sbjct:   58 SELTRAKHTLSLILEELGQTSLPVKSDIALNERDYGDLSGLNKDDARKKWGEEQVHIWRRSYDVAPPGGESLKDTLARTLPYYVQEILPGVLRGERTIVTAHGNSLRALIMVLERLSPEAILKRELATGVPIIY 191          
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA_COPPD (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Coprothermobacter proteolyticus (strain ATCC 35245 / DSM 5265 / BT) GN=gpmA PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 4.475e-27
Identity = 62/142 (43.66%), Postives = 84/142 (59.15%), Query Frame = -1
Query:  506 IPVVTAWQLNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPPPN-------------------------GESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLYIFKE 856
            IPV   W+LNER YG LQGLNK E  +RYG++QV +WRRSYD+PPP                           ESL+    R V Y+ D I P ++ GK V+I+AHGNS+R+I+ YLDK++ +E+    + TGIP++Y   E
Sbjct:   77 IPVYKHWRLNERHYGALQGLNKAEMTERYGEQQVLLWRRSYDVPPPPLEKTDPRWPGNDPRYALVPEDELPLCESLKDTEARVVPYWADMIVPAIKEGKKVLISAHGNSMRAIVKYLDKMSGEEIAKTNIPTGIPLVYELDE 218          
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA_BACCR (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=gpmA PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 4.475e-27
Identity = 61/142 (42.96%), Postives = 86/142 (60.56%), Query Frame = -1
Query:  506 IPVVTAWQLNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPPPN-------------------------GESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLYIFKE 856
            +P+  +W+LNER YG LQGLNK ETA +YG+EQVH+WRRS D+ PP                           E LE   +R +AY+  +I P L+SG  V+I++HGN++RS++ YLD L+S  V+SL + T IP++Y   E
Sbjct:   77 VPIHKSWKLNERHYGALQGLNKDETAQKYGEEQVHIWRRSVDVRPPALTEDDPRYEATDPRYKTLKKGEFPLTECLEDTEKRVLAYWHSEIAPTLKSGNKVIISSHGNTIRSLVKYLDNLSSDGVVSLNIPTSIPLVYELDE 218          
The following BLAST results are available for this feature:
BLAST of CX047083 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 435
Match NameE-valueIdentityDescription
PGAM2_BOVIN2.623e-2742.48Phosphoglycerate mutase 2 OS=Bos taurus GN=PGAM2 P... [more]
GPMA_ALHEH2.623e-2744.932,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_METHJ3.426e-2742.752,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_DESVV3.426e-2745.992,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_COREF3.426e-2742.572,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_CHLTE3.426e-2744.202,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_BRAJA3.426e-2746.552,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_OLICO4.475e-2741.792,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_COPPD4.475e-2743.662,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_BACCR4.475e-2742.962,3-bisphosphoglycerate-dependent phosphoglycerate... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_12A07_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12A07-A13-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047083 ID=CX047083; Name=CX047083; organism=Citrus sinensis; type=EST; length=919bp
TTTTTAATCGGAAGGAAAAGCTTCTATTTCCTGTCAATTCTTATTTCTTC
AAAGTATTTGCATAACTCCATTACAGACATACAAGAAAATACAGCACCCA
AAATTCTCTTAGTTCAGTCCCTCTTATACATATCTTTCTTTCACACTGAA
ACATACATCTATCTCTTAGTTCATGCCAGAGAGATGTTGGATTGATCAAC
TACTGAAAAAGTACAAAAGGCAATAGCCACTACCCAGCCTTCTGACCCAC
TATCAAGAACTACATCAATACATTTCCTGAAACTAGCTTTTGCACATGTG
CGTTTCATTCCCTTGCAATCTAGTAATGAAACCAGCAGGACAGCAGAAGT
GAAGCAATGGGAATCGGGAGGTAAGCCCCTAAGCTTCAAAGATGTTAATG
CAACATCTCGTCTAACTTCTGTCTATATTGAGCTAAACGCCGTGTATAAG
CATAGACTCCAGCCTCCGCTGGTCCCGCTGGACTTCCCCTTCTAATGAAC
TTTCCCTCTTTGAATATGTAAAGCATGGGTATTCCAGTTGATAGTTCTAA
ACTGATCACCTCTTGGGAAGTTAATTTGTCAAGATACATAATGATGGACC
TCAGTGAATTCCCATGGGCAGCAATCATTACATTCTTTCCTGATTGAAGT
TGCGGTTCAATCTGATCTTTAAAATAAGCAACGGCTCTTTGAGCACACAT
TTCCAAGCTCTCACCATTTGGTGGAGGAATGTCATAACTCCGACGCCACA
CGTGGACTTGTTCCTTTCCATATCTATCAGCCGTTTCCTGCTTATTTAGA
CCCTGTAATTACCCATACATTCTTTCATTCAATTGCCAAGCTGTTACAAC
GGGAATGGACTGCTTCATGGGGTCTTCGCTGAAGATCTGACTCCAGGTCC
TTGCCTGTTCACTTTCATT
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