CX047083

Overview
NameCX047083
Unique NameCX047083
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length919
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA_BACC4 (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Bacillus cereus (strain B4264) GN=gpmA PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 4.475e-27
Identity = 61/142 (42.96%), Postives = 86/142 (60.56%), Query Frame = -1
Query:  506 IPVVTAWQLNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPPPN-------------------------GESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLYIFKE 856
            +P+  +W+LNER YG LQGLNK ETA +YG+EQVH+WRRS D+ PP                           E LE   +R +AY+  +I P L+SG  V+I++HGN++RS++ YLD L+S  V+SL + T IP++Y   E
Sbjct:   77 VPIHKSWKLNERHYGALQGLNKDETAQKYGEEQVHIWRRSVDVRPPALTEDDPRYEATDPRYKTLKKGEFPLTECLEDTEKRVLAYWHSEIAPTLKSGNKVIISSHGNTIRSLVKYLDNLSSDGVVSLNIPTSIPLVYELDE 218          
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA_STAS1 (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=gpmA PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 5.844e-27
Identity = 55/138 (39.86%), Postives = 84/138 (60.87%), Query Frame = -1
Query:  518 IPVVTAWQLNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPP-------------------------PNGESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLY 856
            IP++ +W+LNER YG LQGLNK +   ++G++QVH+WRRSYD+ P                         P  ESL+    R + Y+ DQI  QL  GK V+++AHGNSLR++I YL+ ++ ++++  E+ TG P++Y
Sbjct:   77 IPIIKSWRLNERHYGGLQGLNKDDARKKFGEDQVHIWRRSYDVAPPKQDEAQRESYLNDRKYEHLDRRVMPESESLKDTLVRVIPYWNDQISQQLLDGKTVLVSAHGNSLRALIKYLENVSDEDIVGYEIKTGAPLIY 214          
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA_BRUSU (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Brucella suis GN=gpmA PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 5.844e-27
Identity = 54/105 (51.43%), Postives = 77/105 (73.33%), Query Frame = -1
Query:  518 LNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPPPNGESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLY 832
            LNER YG L GLNK +   ++G+EQVH+WRRSYD+PPP GESL+    R   Y+   I+P +   + V++AAHGNSLR++IM LD LT ++++  EL+TG+P++Y
Sbjct:   86 LNERDYGDLSGLNKDDARAKWGEEQVHIWRRSYDVPPPGGESLKDTGARVWPYYLHTIQPHVLREETVLVAAHGNSLRALIMALDGLTPEQILKQELNTGVPIIY 190          
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA_BRUSI (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=gpmA PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 5.844e-27
Identity = 54/105 (51.43%), Postives = 77/105 (73.33%), Query Frame = -1
Query:  518 LNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPPPNGESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLY 832
            LNER YG L GLNK +   ++G+EQVH+WRRSYD+PPP GESL+    R   Y+   I+P +   + V++AAHGNSLR++IM LD LT ++++  EL+TG+P++Y
Sbjct:   86 LNERDYGDLSGLNKDDARAKWGEEQVHIWRRSYDVPPPGGESLKDTGARVWPYYLHTIQPHVLREETVLVAAHGNSLRALIMALDGLTPEQILKQELNTGVPIIY 190          
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA_BRUO2 (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=gpmA PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 5.844e-27
Identity = 54/105 (51.43%), Postives = 77/105 (73.33%), Query Frame = -1
Query:  518 LNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPPPNGESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLY 832
            LNER YG L GLNK +   ++G+EQVH+WRRSYD+PPP GESL+    R   Y+   I+P +   + V++AAHGNSLR++IM LD LT ++++  EL+TG+P++Y
Sbjct:   86 LNERDYGDLSGLNKDDARAKWGEEQVHIWRRSYDVPPPGGESLKDTGARVWPYYLHTIQPHVLREETVLVAAHGNSLRTLIMALDGLTPEQILKQELNTGVPIIY 190          
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA_BRUC2 (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=gpmA PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 5.844e-27
Identity = 54/105 (51.43%), Postives = 77/105 (73.33%), Query Frame = -1
Query:  518 LNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPPPNGESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLY 832
            LNER YG L GLNK +   ++G+EQVH+WRRSYD+PPP GESL+    R   Y+   I+P +   + V++AAHGNSLR++IM LD LT ++++  EL+TG+P++Y
Sbjct:   86 LNERDYGDLSGLNKDDARAKWGEEQVHIWRRSYDVPPPGGESLKDTGARVWPYYLHTIQPHVLREETVLVAAHGNSLRALIMALDGLTPEQILKQELNTGVPIIY 190          
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA_BRUAB (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Brucella abortus GN=gpmA PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 5.844e-27
Identity = 54/105 (51.43%), Postives = 77/105 (73.33%), Query Frame = -1
Query:  518 LNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPPPNGESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLY 832
            LNER YG L GLNK +   ++G+EQVH+WRRSYD+PPP GESL+    R   Y+   I+P +   + V++AAHGNSLR++IM LD LT ++++  EL+TG+P++Y
Sbjct:   86 LNERDYGDLSGLNKDDARAKWGEEQVHIWRRSYDVPPPGGESLKDTGARVWPYYLHTIQPHVLREETVLVAAHGNSLRALIMALDGLTPEQILKQELNTGVPIIY 190          
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA_BRUA2 (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Brucella abortus (strain 2308) GN=gpmA PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 5.844e-27
Identity = 54/105 (51.43%), Postives = 77/105 (73.33%), Query Frame = -1
Query:  518 LNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPPPNGESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLY 832
            LNER YG L GLNK +   ++G+EQVH+WRRSYD+PPP GESL+    R   Y+   I+P +   + V++AAHGNSLR++IM LD LT ++++  EL+TG+P++Y
Sbjct:   86 LNERDYGDLSGLNKDDARAKWGEEQVHIWRRSYDVPPPGGESLKDTGARVWPYYLHTIQPHVLREETVLVAAHGNSLRALIMALDGLTPEQILKQELNTGVPIIY 190          
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA_BRUA1 (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Brucella abortus (strain S19) GN=gpmA PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 5.844e-27
Identity = 54/105 (51.43%), Postives = 77/105 (73.33%), Query Frame = -1
Query:  518 LNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPPPNGESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLY 832
            LNER YG L GLNK +   ++G+EQVH+WRRSYD+PPP GESL+    R   Y+   I+P +   + V++AAHGNSLR++IM LD LT ++++  EL+TG+P++Y
Sbjct:   86 LNERDYGDLSGLNKDDARAKWGEEQVHIWRRSYDVPPPGGESLKDTGARVWPYYLHTIQPHVLREETVLVAAHGNSLRALIMALDGLTPEQILKQELNTGVPIIY 190          
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA_STRM5 (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Stenotrophomonas maltophilia (strain R551-3) GN=gpmA PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 7.633e-27
Identity = 63/157 (40.13%), Postives = 90/157 (57.32%), Query Frame = -1
Query:  461 IPVVTAWQLNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPP-------------------------PNGESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLYIFKEGKFIRRGSPAGPAEA 856
            +PV  +W+LNER YG LQGL+K ETA ++G++QV VWRRSYDIPP                         P  ESL     R + Y+ D I PQL+ GK V++ AHGNSLR++  YL+ ++ +E++ L + TGIP+L+   +   ++     G  EA
Sbjct:   78 LPVNKSWRLNERHYGGLQGLDKAETAAKHGEDQVKVWRRSYDIPPPAMDLEDPGHPIHDRRYAGLDRNALPGTESLATTLDRVLPYWHDAIAPQLKDGKTVLVTAHGNSLRALYKYLNNVSREEILELNIPTGIPLLFELNDDLTVKSFRYLGDPEA 234          
The following BLAST results are available for this feature:
BLAST of CX047083 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 435
Match NameE-valueIdentityDescription
GPMA_BACC44.475e-2742.962,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_STAS15.844e-2739.862,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_BRUSU5.844e-2751.432,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_BRUSI5.844e-2751.432,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_BRUO25.844e-2751.432,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_BRUC25.844e-2751.432,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_BRUAB5.844e-2751.432,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_BRUA25.844e-2751.432,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_BRUA15.844e-2751.432,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_STRM57.633e-2740.132,3-bisphosphoglycerate-dependent phosphoglycerate... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_12A07_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12A07-A13-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047083 ID=CX047083; Name=CX047083; organism=Citrus sinensis; type=EST; length=919bp
TTTTTAATCGGAAGGAAAAGCTTCTATTTCCTGTCAATTCTTATTTCTTC
AAAGTATTTGCATAACTCCATTACAGACATACAAGAAAATACAGCACCCA
AAATTCTCTTAGTTCAGTCCCTCTTATACATATCTTTCTTTCACACTGAA
ACATACATCTATCTCTTAGTTCATGCCAGAGAGATGTTGGATTGATCAAC
TACTGAAAAAGTACAAAAGGCAATAGCCACTACCCAGCCTTCTGACCCAC
TATCAAGAACTACATCAATACATTTCCTGAAACTAGCTTTTGCACATGTG
CGTTTCATTCCCTTGCAATCTAGTAATGAAACCAGCAGGACAGCAGAAGT
GAAGCAATGGGAATCGGGAGGTAAGCCCCTAAGCTTCAAAGATGTTAATG
CAACATCTCGTCTAACTTCTGTCTATATTGAGCTAAACGCCGTGTATAAG
CATAGACTCCAGCCTCCGCTGGTCCCGCTGGACTTCCCCTTCTAATGAAC
TTTCCCTCTTTGAATATGTAAAGCATGGGTATTCCAGTTGATAGTTCTAA
ACTGATCACCTCTTGGGAAGTTAATTTGTCAAGATACATAATGATGGACC
TCAGTGAATTCCCATGGGCAGCAATCATTACATTCTTTCCTGATTGAAGT
TGCGGTTCAATCTGATCTTTAAAATAAGCAACGGCTCTTTGAGCACACAT
TTCCAAGCTCTCACCATTTGGTGGAGGAATGTCATAACTCCGACGCCACA
CGTGGACTTGTTCCTTTCCATATCTATCAGCCGTTTCCTGCTTATTTAGA
CCCTGTAATTACCCATACATTCTTTCATTCAATTGCCAAGCTGTTACAAC
GGGAATGGACTGCTTCATGGGGTCTTCGCTGAAGATCTGACTCCAGGTCC
TTGCCTGTTCACTTTCATT
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