CX047083

Overview
NameCX047083
Unique NameCX047083
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length919
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA_SALTY (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Salmonella typhimurium GN=gpmA PE=3 SV=3)

HSP 1 Score: 121.324 bits (303), Expect = 7.633e-27
Identity = 59/142 (41.55%), Postives = 85/142 (59.86%), Query Frame = -1 
Query:  506 IPVVTAWQLNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPPPN-------------------------GESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLYIFKE 856
            +PV  +W+LNER YG LQGLNK ETA++YG EQV  WRR + + PP                           ESL +   R + Y+ D I P+++SG+ V+IAAHGNSLR+++ YLD ++  E++ L + TG+P++Y F E
Sbjct:   79 LPVEKSWKLNERHYGALQGLNKAETAEKYGDEQVKQWRRGFAVTPPELTKDDERYPGHDPRYAKLSEKELPLTESLALTIDRVIPYWNDTILPRMKSGERVIIAAHGNSLRALVKYLDNMSEDEILELNIPTGVPLVYEFDE 220
[Close]
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA_SALTI (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Salmonella typhi GN=gpmA PE=3 SV=3)

HSP 1 Score: 121.324 bits (303), Expect = 7.633e-27
Identity = 59/142 (41.55%), Postives = 85/142 (59.86%), Query Frame = -1 
Query:  506 IPVVTAWQLNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPPPN-------------------------GESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLYIFKE 856
            +PV  +W+LNER YG LQGLNK ETA++YG EQV  WRR + + PP                           ESL +   R + Y+ D I P+++SG+ V+IAAHGNSLR+++ YLD ++  E++ L + TG+P++Y F E
Sbjct:   79 LPVEKSWKLNERHYGALQGLNKAETAEKYGDEQVKQWRRGFAVTPPELTKDDERYPGHDPRYAKLSEKELPLTESLALTIDRVIPYWNDTILPRMKSGERVIIAAHGNSLRALVKYLDNMSEDEILELNIPTGVPLVYEFDE 220
[Close]
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA_SALSV (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Salmonella schwarzengrund (strain CVM19633) GN=gpmA PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 7.633e-27
Identity = 59/142 (41.55%), Postives = 85/142 (59.86%), Query Frame = -1 
Query:  506 IPVVTAWQLNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPPPN-------------------------GESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLYIFKE 856
            +PV  +W+LNER YG LQGLNK ETA++YG EQV  WRR + + PP                           ESL +   R + Y+ D I P+++SG+ V+IAAHGNSLR+++ YLD ++  E++ L + TG+P++Y F E
Sbjct:   79 LPVEKSWKLNERHYGALQGLNKAETAEKYGDEQVKQWRRGFAVTPPELTKDDERYPGHDPRYAKLSEKELPLTESLALTIDRVIPYWNDTILPRMKSGERVIIAAHGNSLRALVKYLDNMSEDEILELNIPTGVPLVYEFDE 220
[Close]
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA_SALPC (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Salmonella paratyphi C (strain RKS4594) GN=gpmA PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 7.633e-27
Identity = 59/142 (41.55%), Postives = 85/142 (59.86%), Query Frame = -1 
Query:  506 IPVVTAWQLNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPPPN-------------------------GESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLYIFKE 856
            +PV  +W+LNER YG LQGLNK ETA++YG EQV  WRR + + PP                           ESL +   R + Y+ D I P+++SG+ V+IAAHGNSLR+++ YLD ++  E++ L + TG+P++Y F E
Sbjct:   79 LPVEKSWKLNERHYGALQGLNKAETAEKYGDEQVKQWRRGFAVTPPELTKDDERYPGHDPRYAKLSEKELPLTESLALTIDRVIPYWNDTILPRMKSGERVIIAAHGNSLRALVKYLDNMSEDEILELNIPTGVPLVYEFDE 220
[Close]
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA_SALPB (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=gpmA PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 7.633e-27
Identity = 59/142 (41.55%), Postives = 85/142 (59.86%), Query Frame = -1 
Query:  506 IPVVTAWQLNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPPPN-------------------------GESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLYIFKE 856
            +PV  +W+LNER YG LQGLNK ETA++YG EQV  WRR + + PP                           ESL +   R + Y+ D I P+++SG+ V+IAAHGNSLR+++ YLD ++  E++ L + TG+P++Y F E
Sbjct:   79 LPVEKSWKLNERHYGALQGLNKAETAEKYGDEQVKQWRRGFAVTPPELTKDDERYPGHDPRYAKLSEKELPLTESLALTIDRVIPYWNDTILPRMKSGERVIIAAHGNSLRALVKYLDNMSEDEILELNIPTGVPLVYEFDE 220
[Close]
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA_SALNS (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Salmonella newport (strain SL254) GN=gpmA PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 7.633e-27
Identity = 59/142 (41.55%), Postives = 85/142 (59.86%), Query Frame = -1 
Query:  506 IPVVTAWQLNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPPPN-------------------------GESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLYIFKE 856
            +PV  +W+LNER YG LQGLNK ETA++YG EQV  WRR + + PP                           ESL +   R + Y+ D I P+++SG+ V+IAAHGNSLR+++ YLD ++  E++ L + TG+P++Y F E
Sbjct:   79 LPVEKSWKLNERHYGALQGLNKAETAEKYGDEQVKQWRRGFAVTPPELTKDDERYPGHDPRYAKLSEKELPLTESLALTIDRVIPYWNDTILPRMKSGERVIIAAHGNSLRALVKYLDNMSEDEILELNIPTGVPLVYEFDE 220
[Close]
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA_SALHS (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Salmonella heidelberg (strain SL476) GN=gpmA PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 7.633e-27
Identity = 59/142 (41.55%), Postives = 85/142 (59.86%), Query Frame = -1 
Query:  506 IPVVTAWQLNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPPPN-------------------------GESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLYIFKE 856
            +PV  +W+LNER YG LQGLNK ETA++YG EQV  WRR + + PP                           ESL +   R + Y+ D I P+++SG+ V+IAAHGNSLR+++ YLD ++  E++ L + TG+P++Y F E
Sbjct:   79 LPVEKSWKLNERHYGALQGLNKAETAEKYGDEQVKQWRRGFAVTPPELTKDDERYPGHDPRYAKLSEKELPLTESLALTIDRVIPYWNDTILPRMKSGERVIIAAHGNSLRALVKYLDNMSEDEILELNIPTGVPLVYEFDE 220
[Close]
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA_SALG2 (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=gpmA PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 7.633e-27
Identity = 59/142 (41.55%), Postives = 85/142 (59.86%), Query Frame = -1 
Query:  506 IPVVTAWQLNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPPPN-------------------------GESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLYIFKE 856
            +PV  +W+LNER YG LQGLNK ETA++YG EQV  WRR + + PP                           ESL +   R + Y+ D I P+++SG+ V+IAAHGNSLR+++ YLD ++  E++ L + TG+P++Y F E
Sbjct:   79 LPVEKSWKLNERHYGALQGLNKAETAEKYGDEQVKQWRRGFAVTPPELTKDDERYPGHDPRYAKLSEKELPLTESLALTIDRVIPYWNDTILPRMKSGERVIIAAHGNSLRALVKYLDNMSEDEILELNIPTGVPLVYEFDE 220
[Close]
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA_SALEP (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Salmonella enteritidis PT4 (strain P125109) GN=gpmA PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 7.633e-27
Identity = 59/142 (41.55%), Postives = 85/142 (59.86%), Query Frame = -1 
Query:  506 IPVVTAWQLNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPPPN-------------------------GESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLYIFKE 856
            +PV  +W+LNER YG LQGLNK ETA++YG EQV  WRR + + PP                           ESL +   R + Y+ D I P+++SG+ V+IAAHGNSLR+++ YLD ++  E++ L + TG+P++Y F E
Sbjct:   79 LPVEKSWKLNERHYGALQGLNKAETAEKYGDEQVKQWRRGFAVTPPELTKDDERYPGHDPRYAKLSEKELPLTESLALTIDRVIPYWNDTILPRMKSGERVIIAAHGNSLRALVKYLDNMSEDEILELNIPTGVPLVYEFDE 220
[Close]
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA_SALDC (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Salmonella dublin (strain CT_02021853) GN=gpmA PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 7.633e-27
Identity = 59/142 (41.55%), Postives = 85/142 (59.86%), Query Frame = -1 
Query:  506 IPVVTAWQLNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPPPN-------------------------GESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLYIFKE 856
            +PV  +W+LNER YG LQGLNK ETA++YG EQV  WRR + + PP                           ESL +   R + Y+ D I P+++SG+ V+IAAHGNSLR+++ YLD ++  E++ L + TG+P++Y F E
Sbjct:   79 LPVEKSWKLNERHYGALQGLNKAETAEKYGDEQVKQWRRGFAVTPPELTKDDERYPGHDPRYAKLSEKELPLTESLALTIDRVIPYWNDTILPRMKSGERVIIAAHGNSLRALVKYLDNMSEDEILELNIPTGVPLVYEFDE 220
The following BLAST results are available for this feature:
BLAST of CX047083 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 435
Match NameE-valueIdentityDescription
GPMA_SALTY7.633e-2741.552,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_SALTI7.633e-2741.552,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_SALSV7.633e-2741.552,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_SALPC7.633e-2741.552,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_SALPB7.633e-2741.552,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_SALNS7.633e-2741.552,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_SALHS7.633e-2741.552,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_SALG27.633e-2741.552,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_SALEP7.633e-2741.552,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_SALDC7.633e-2741.552,3-bisphosphoglycerate-dependent phosphoglycerate... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS09_12A07_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12A07-A13-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047083 ID=CX047083; Name=CX047083; organism=Citrus sinensis; type=EST; length=919bp
TTTTTAATCGGAAGGAAAAGCTTCTATTTCCTGTCAATTCTTATTTCTTC
AAAGTATTTGCATAACTCCATTACAGACATACAAGAAAATACAGCACCCA
AAATTCTCTTAGTTCAGTCCCTCTTATACATATCTTTCTTTCACACTGAA
ACATACATCTATCTCTTAGTTCATGCCAGAGAGATGTTGGATTGATCAAC
TACTGAAAAAGTACAAAAGGCAATAGCCACTACCCAGCCTTCTGACCCAC
TATCAAGAACTACATCAATACATTTCCTGAAACTAGCTTTTGCACATGTG
CGTTTCATTCCCTTGCAATCTAGTAATGAAACCAGCAGGACAGCAGAAGT
GAAGCAATGGGAATCGGGAGGTAAGCCCCTAAGCTTCAAAGATGTTAATG
CAACATCTCGTCTAACTTCTGTCTATATTGAGCTAAACGCCGTGTATAAG
CATAGACTCCAGCCTCCGCTGGTCCCGCTGGACTTCCCCTTCTAATGAAC
TTTCCCTCTTTGAATATGTAAAGCATGGGTATTCCAGTTGATAGTTCTAA
ACTGATCACCTCTTGGGAAGTTAATTTGTCAAGATACATAATGATGGACC
TCAGTGAATTCCCATGGGCAGCAATCATTACATTCTTTCCTGATTGAAGT
TGCGGTTCAATCTGATCTTTAAAATAAGCAACGGCTCTTTGAGCACACAT
TTCCAAGCTCTCACCATTTGGTGGAGGAATGTCATAACTCCGACGCCACA
CGTGGACTTGTTCCTTTCCATATCTATCAGCCGTTTCCTGCTTATTTAGA
CCCTGTAATTACCCATACATTCTTTCATTCAATTGCCAAGCTGTTACAAC
GGGAATGGACTGCTTCATGGGGTCTTCGCTGAAGATCTGACTCCAGGTCC
TTGCCTGTTCACTTTCATT
back to top