CX047083

Overview
NameCX047083
Unique NameCX047083
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length919
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA_SALCH (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Salmonella choleraesuis GN=gpmA PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 7.633e-27
Identity = 59/142 (41.55%), Postives = 85/142 (59.86%), Query Frame = -1
Query:  506 IPVVTAWQLNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPPPN-------------------------GESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLYIFKE 856
            +PV  +W+LNER YG LQGLNK ETA++YG EQV  WRR + + PP                           ESL +   R + Y+ D I P+++SG+ V+IAAHGNSLR+++ YLD ++  E++ L + TG+P++Y F E
Sbjct:   79 LPVEKSWKLNERHYGALQGLNKAETAEKYGDEQVKQWRRGFAVTPPELTKDDERYPGHDPRYAKLSEKELPLTESLALTIDRVIPYWNDTILPRMKSGERVIIAAHGNSLRALVKYLDNMSEDEILELNIPTGVPLVYEFDE 220          
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA_SALA4 (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Salmonella agona (strain SL483) GN=gpmA PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 7.633e-27
Identity = 59/142 (41.55%), Postives = 85/142 (59.86%), Query Frame = -1
Query:  506 IPVVTAWQLNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPPPN-------------------------GESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLYIFKE 856
            +PV  +W+LNER YG LQGLNK ETA++YG EQV  WRR + + PP                           ESL +   R + Y+ D I P+++SG+ V+IAAHGNSLR+++ YLD ++  E++ L + TG+P++Y F E
Sbjct:   79 LPVEKSWKLNERHYGALQGLNKAETAEKYGDEQVKQWRRGFAVTPPELTKDDERYPGHDPRYAKLSEKELPLTESLALTIDRVIPYWNDTILPRMKSGERVIIAAHGNSLRALVKYLDNMSEDEILELNIPTGVPLVYEFDE 220          
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA_PELLD (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Pelodictyon luteolum (strain DSM 273) GN=gpmA PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 7.633e-27
Identity = 67/151 (44.37%), Postives = 90/151 (59.60%), Query Frame = -1
Query:  518 WSQIFSEDPMKQSIPVVTAWQLNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPPP--------------------NGE-SLEMCAQRAVAYF----KDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLY 895
            WS +   D M   +PV  +W+LNER YG LQGLNK ET+ +YG+EQV VWRRSYD PPP                     GE  L  C +  VA F     + I PQ++SGK+V I AHGNSLR+++ YLD ++  +++ L + TGIP++Y
Sbjct:   66 WSVLDEMDQMW--LPVHKSWRLNERHYGALQGLNKTETSQKYGEEQVLVWRRSYDTPPPALGRDDERWPGADPRYRGMAEGEIPLSECLKDTVARFLPLWHETIAPQIRSGKSVAIVAHGNSLRALVKYLDNISEDDIVGLNIPTGIPLVY 214          
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA_METMA (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Methanosarcina mazei GN=gpmA PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 7.633e-27
Identity = 57/129 (44.19%), Postives = 84/129 (65.12%), Query Frame = -1
Query:  470 IPVVTAWQLNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPPPNGESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLYIFKEGKFIRRGSPAGP 856
            IPV T   LNER YG LQG  KQ+  ++YG EQV  WR +++  PP GESL+   +R V YF+ ++ P L+ GKNV+I AH +SLR+++ Y++ ++ +++  + LSTG   +Y F EGK +R     GP
Sbjct:  107 IPVYTTPALNERYYGKLQGRKKQKMEEKYGAEQVANWRWNFEPGPPEGESLKAVYERTVPYFRKKVMPALEGGKNVLICAHQSSLRALVKYIEDISDKDIREVRLSTGELAIYHFSEGKLVRENEELGP 235          
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA_ENT38 (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Enterobacter sp. (strain 638) GN=gpmA PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 7.633e-27
Identity = 60/142 (42.25%), Postives = 85/142 (59.86%), Query Frame = -1
Query:  506 IPVVTAWQLNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPPPN-------------------------GESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLYIFKE 856
            +PV  +W+LNER YG LQGLNK ETA++YG EQV  WRR + + PP                           ESL +   R V Y+ D I P+++SG+ V++AAHGNSLR+++ YLD L  +E++ L + TG+P++Y F E
Sbjct:   79 LPVEKSWKLNERHYGALQGLNKAETAEKYGDEQVKQWRRGFAVTPPELTKDDERYPGHDPRYAKLTDAELPQTESLALTIDRVVPYWNDTILPRVKSGERVIVAAHGNSLRALVKYLDNLGEEEILELNIPTGVPLVYEFDE 220          
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA_BART1 (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=gpmA PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 7.633e-27
Identity = 60/133 (45.11%), Postives = 87/133 (65.41%), Query Frame = -1
Query:  512 EQARTWSQIFSEDPMKQSIPVVTAWQLNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPPPNGESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLYIF 910
            ++A+  +Q   E   +  + ++ +  LNER YG L GLNK E   ++G+EQV +WRRSY I PPNGESL     R   Y+   I+P +   + V+IAAHGNSLR+++M L+ L  +E+IS EL+TGIP++Y F
Sbjct:   60 QRAQKTAQHILEQMGQSDLEMIKSAALNERNYGDLSGLNKDEVRQQWGEEQVKMWRRSYTIAPPNGESLRDTGARIWPYYLYHIQPHILRSQTVLIAAHGNSLRALMMALEGLNGEEIISQELATGIPIIYTF 192          
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: PGAM2_HUMAN (Phosphoglycerate mutase 2 OS=Homo sapiens GN=PGAM2 PE=1 SV=3)

HSP 1 Score: 120.939 bits (302), Expect = 9.969e-27
Identity = 64/153 (41.83%), Postives = 92/153 (60.13%), Query Frame = -1
Query:  518 WSQIFSEDPMKQSIPVVTAWQLNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPP---------------------------PNGESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLY 895
            W+ +   D M   +PVV  W+LNER YG L GLNK ETA ++G+EQV +WRRS+DIPP                           P  ESL+    RA+ ++ ++I PQ+++GK V+IAAHGNSLR I+ +L+ ++ Q ++ L L TGIP++Y
Sbjct:   68 WAILDGTDQMW--LPVVRTWRLNERHYGGLTGLNKAETAAKHGEEQVKIWRRSFDIPPPPMDEKHPYYNSISKERRYAGLKPGELPTCESLKDTIARALPFWNEEIVPQIKAGKRVLIAAHGNSLRGIVKHLEGMSDQAIMELNLPTGIPIVY 218          
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: PGAM1_BOVIN (Phosphoglycerate mutase 1 OS=Bos taurus GN=PGAM1 PE=2 SV=3)

HSP 1 Score: 120.939 bits (302), Expect = 9.969e-27
Identity = 64/153 (41.83%), Postives = 92/153 (60.13%), Query Frame = -1
Query:  518 WSQIFSEDPMKQSIPVVTAWQLNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPP---------------------------PNGESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLY 895
            W+ + + D M   +PVV  W+LNER YG L GLNK ETA ++G+ QV +WRRSYD+PP                           P+ ESL+    RA+ ++ ++I PQ++ GK V+IAAHGNSLR I+ +L+ L+ + ++ L L TGIPM+Y
Sbjct:   68 WTVLDAIDQMW--LPVVRTWRLNERHYGGLTGLNKAETAAKHGEAQVKIWRRSYDVPPPPMEPDHPFYSNISKDRRYADLTEDQLPSCESLKDTIARALPFWNEEIVPQIKEGKRVLIAAHGNSLRGIVKHLEGLSEEAIMELNLPTGIPMVY 218          
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA_SALPK (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Salmonella paratyphi A (strain AKU_12601) GN=gpmA PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 9.969e-27
Identity = 59/142 (41.55%), Postives = 85/142 (59.86%), Query Frame = -1
Query:  506 IPVVTAWQLNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPPPN-------------------------GESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLYIFKE 856
            +PV  +W+LNER YG LQGLNK ETA++YG EQV  WRR + + PP                           ESL +   R + Y+ D I P+++SG+ V+IAAHGNSLR+++ YLD ++  E++ L + TG+P++Y F E
Sbjct:   79 LPVEKSWKLNERHYGALQGLNKAETAEKYGDEQVKQWRRGFAVTPPELTKDDERYPGHDPRYAKLSEKELPLTESLALTIDRVIPYWTDTILPRMKSGERVIIAAHGNSLRALVKYLDNMSEDEILELNIPTGVPLVYEFDE 220          
BLAST of CX047083 vs. ExPASy Swiss-Prot
Match: GPMA_SALPA (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Salmonella paratyphi A GN=gpmA PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 9.969e-27
Identity = 59/142 (41.55%), Postives = 85/142 (59.86%), Query Frame = -1
Query:  506 IPVVTAWQLNERMYG*LQGLNKQETADRYGKEQVHVWRRSYDIPPPN-------------------------GESLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLYIFKE 856
            +PV  +W+LNER YG LQGLNK ETA++YG EQV  WRR + + PP                           ESL +   R + Y+ D I P+++SG+ V+IAAHGNSLR+++ YLD ++  E++ L + TG+P++Y F E
Sbjct:   79 LPVEKSWKLNERHYGALQGLNKAETAEKYGDEQVKQWRRGFAVTPPELTKDDERYPGHDPRYAKLSEKELPLTESLALTIDRVIPYWTDTILPRMKSGERVIIAAHGNSLRALVKYLDNMSEDEILELNIPTGVPLVYEFDE 220          
The following BLAST results are available for this feature:
BLAST of CX047083 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 435
Match NameE-valueIdentityDescription
GPMA_SALCH7.633e-2741.552,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_SALA47.633e-2741.552,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_PELLD7.633e-2744.372,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_METMA7.633e-2744.192,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_ENT387.633e-2742.252,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_BART17.633e-2745.112,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
PGAM2_HUMAN9.969e-2741.83Phosphoglycerate mutase 2 OS=Homo sapiens GN=PGAM2... [more]
PGAM1_BOVIN9.969e-2741.83Phosphoglycerate mutase 1 OS=Bos taurus GN=PGAM1 P... [more]
GPMA_SALPK9.969e-2741.552,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_SALPA9.969e-2741.552,3-bisphosphoglycerate-dependent phosphoglycerate... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_12A07_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12A07-A13-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047083 ID=CX047083; Name=CX047083; organism=Citrus sinensis; type=EST; length=919bp
TTTTTAATCGGAAGGAAAAGCTTCTATTTCCTGTCAATTCTTATTTCTTC
AAAGTATTTGCATAACTCCATTACAGACATACAAGAAAATACAGCACCCA
AAATTCTCTTAGTTCAGTCCCTCTTATACATATCTTTCTTTCACACTGAA
ACATACATCTATCTCTTAGTTCATGCCAGAGAGATGTTGGATTGATCAAC
TACTGAAAAAGTACAAAAGGCAATAGCCACTACCCAGCCTTCTGACCCAC
TATCAAGAACTACATCAATACATTTCCTGAAACTAGCTTTTGCACATGTG
CGTTTCATTCCCTTGCAATCTAGTAATGAAACCAGCAGGACAGCAGAAGT
GAAGCAATGGGAATCGGGAGGTAAGCCCCTAAGCTTCAAAGATGTTAATG
CAACATCTCGTCTAACTTCTGTCTATATTGAGCTAAACGCCGTGTATAAG
CATAGACTCCAGCCTCCGCTGGTCCCGCTGGACTTCCCCTTCTAATGAAC
TTTCCCTCTTTGAATATGTAAAGCATGGGTATTCCAGTTGATAGTTCTAA
ACTGATCACCTCTTGGGAAGTTAATTTGTCAAGATACATAATGATGGACC
TCAGTGAATTCCCATGGGCAGCAATCATTACATTCTTTCCTGATTGAAGT
TGCGGTTCAATCTGATCTTTAAAATAAGCAACGGCTCTTTGAGCACACAT
TTCCAAGCTCTCACCATTTGGTGGAGGAATGTCATAACTCCGACGCCACA
CGTGGACTTGTTCCTTTCCATATCTATCAGCCGTTTCCTGCTTATTTAGA
CCCTGTAATTACCCATACATTCTTTCATTCAATTGCCAAGCTGTTACAAC
GGGAATGGACTGCTTCATGGGGTCTTCGCTGAAGATCTGACTCCAGGTCC
TTGCCTGTTCACTTTCATT
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