CX047082

Overview
NameCX047082
Unique NameCX047082
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length843
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047082 vs. ExPASy Swiss-Prot
Match: GPMA_METVS (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=gpmA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.197e-21
Identity = 52/120 (43.33%), Postives = 81/120 (67.50%), Query Frame = 3
Query:  483 AALILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRISNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWALNERMYG*LQGL 842
            A L+ +RHGES+WN+ N+FTG VDVPL+K GV+EA  AGK + +   D+ Y+S LIRA  T +L M +++     I ++++S + + W +++  +++  + PV  +W LNER YG LQGL
Sbjct:    2 ANLVFLRHGESIWNKMNIFTGWVDVPLSKGGVKEAKIAGKLLKSYKFDVAYSSELIRALNTLILVMQENKASNF-IKINHDSVKMKEWGKVYGAESINYT-PVYKSWELNERYYGKLQGL 119          
BLAST of CX047082 vs. ExPASy Swiss-Prot
Match: GPMA_CYAP7 (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Cyanothece sp. (strain PCC 7424) GN=gpmA PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.145e-17
Identity = 50/124 (40.32%), Postives = 77/124 (62.10%), Query Frame = 3
Query:  489 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRI--SNIPVDMIYTSALIRAQMTAMLAMTQHRR---RKVPIIMHNESE-QARTWSQIFSEDTMKQSIPVVTAWALNERMYG*LQGL 842
            LIL+RHG+SLWN  N FTG VD+PL+++G  EA+ A  ++      +D+ +TS LIRA  TA++A+T++ +    K PI  H+  +     W +   +   K+ +P+  + AL+ER YG LQGL
Sbjct:    4 LILIRHGQSLWNAANKFTGWVDIPLSRRGRAEAMIAASKLQEQGYRIDVCFTSLLIRAMETAIIALTEYEQLCGGKTPIFKHDADDLDWHGWDKY--DGDPKEELPIFPSQALDERYYGDLQGL 125          
BLAST of CX047082 vs. ExPASy Swiss-Prot
Match: GPMA_METAC (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Methanosarcina acetivorans GN=gpmA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.283e-16
Identity = 50/131 (38.17%), Postives = 73/131 (55.73%), Query Frame = 3
Query:  489 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRISNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNES--------------EQARTWSQIFSEDTMKQSIPVVTAWALNERMYG*LQG 839
            LI+VRHGES WN    F G VDVPLT KG++EA+     +  I +D+ +TS LIRAQ T  L ++  +++K+ + +H E+              +  +     +  +T K  IP+ +  ALNER YG LQG
Sbjct:    4 LIIVRHGESGWNVDGRFGGWVDVPLTGKGIKEALLCAAELEGIDLDVTFTSKLIRAQETLFLILS--KQKKIGVFVHEEAGTGEDRTEREDGSRKDRKEKRYAYPPNTEKNLIPIHSNEALNERYYGILQG 132          
BLAST of CX047082 vs. ExPASy Swiss-Prot
Match: GPMA1_GLOVI (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase 1 OS=Gloeobacter violaceus GN=gpmA1 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.537e-15
Identity = 50/124 (40.32%), Postives = 73/124 (58.87%), Query Frame = 3
Query:  483 AALILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRISNIPVDMIYTSALIRAQMTAMLAMTQHR---RRKVPIIMHN-ESEQARTWSQIFSEDTMKQSIPVVTAWALNERMYG*LQGL 842
            A LIL+RHG+SLWN  N FTG VDVPL+++G  EA  A  ++ +  V++ +TS L+RA  TA++ +T+       K+PII H  + E    W     +   +  +P+     L+ER YG LQGL
Sbjct:    2 AHLILIRHGQSLWNAANKFTGWVDVPLSERGRAEATIASCKLRDYRVNVCFTSMLMRAIETAVITLTECDDICGGKIPIIKHEADDENWHGWDNYDGDPAAE--LPIYPTATLDERYYGDLQGL 123          
BLAST of CX047082 vs. ExPASy Swiss-Prot
Match: GPMA_METMA (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Methanosarcina mazei GN=gpmA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.472e-15
Identity = 46/122 (37.70%), Postives = 71/122 (58.20%), Query Frame = 3
Query:  489 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRISNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESE-----QARTWSQIFSEDTMKQSIPVVTAWALNERMYG*LQG 839
            LILVRHGE         +G +D+PL++KG+EEA+E  K + NI +D+ + S L+R Q T  + ++   ++K  +++H ++E     +   W   + E   +  IPV T  ALNER YG LQG
Sbjct:    7 LILVRHGEPGLKPGERLSGWIDIPLSRKGIEEALECAKALENIEIDIAFASDLVRTQETLFIILS--GQKKTGVVVHEKTEDKVPPEKLDWYS-YPEKLGEDLIPVYTTPALNERYYGKLQG 125          
BLAST of CX047082 vs. ExPASy Swiss-Prot
Match: GPMA_MYCLE (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Mycobacterium leprae GN=gpmA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.841e-15
Identity = 54/127 (42.52%), Postives = 68/127 (53.54%), Query Frame = 3
Query:  468 KKSNEAALILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRIS--NIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWALNERMYG*LQGL 842
            ++ N A LIL+RHGES WN +NLFTG VDV LT KG  EA+ +G+ ++  N+  D++YTS L RA  TA LA+                     W            IPV  +W LNER YG LQGL
Sbjct:    2 QQGNTATLILLRHGESDWNARNLFTGWVDVGLTDKGRAEAVRSGELLAEHNLLPDVLYTSLLRRAITTAHLAL-----------------DTADWLW----------IPVRRSWRLNERHYGALQGL 101          
BLAST of CX047082 vs. ExPASy Swiss-Prot
Match: GPMA_MYCLB (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Mycobacterium leprae (strain Br4923) GN=gpmA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.841e-15
Identity = 54/127 (42.52%), Postives = 68/127 (53.54%), Query Frame = 3
Query:  468 KKSNEAALILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRIS--NIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWALNERMYG*LQGL 842
            ++ N A LIL+RHGES WN +NLFTG VDV LT KG  EA+ +G+ ++  N+  D++YTS L RA  TA LA+                     W            IPV  +W LNER YG LQGL
Sbjct:    2 QQGNTATLILLRHGESDWNARNLFTGWVDVGLTDKGRAEAVRSGELLAEHNLLPDVLYTSLLRRAITTAHLAL-----------------DTADWLW----------IPVRRSWRLNERHYGALQGL 101          
BLAST of CX047082 vs. ExPASy Swiss-Prot
Match: GPMA_FRAAA (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Frankia alni (strain ACN14a) GN=gpmA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.628e-15
Identity = 50/120 (41.67%), Postives = 66/120 (55.00%), Query Frame = 3
Query:  489 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRISNIPV--DMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWALNERMYG*LQGL 842
            L+L+RHGES WN +NLFTG VDV L++KG++EA   G+ ++   V  D+++TS L RA  TA LA+                   RTW            +PV  +W LNER YG LQGL
Sbjct:    4 LVLLRHGESNWNRENLFTGWVDVDLSEKGLKEATRGGELLAEAGVLPDVVHTSLLTRAIRTAWLAL---------------DAAGRTW------------VPVRRSWRLNERHYGGLQGL 96          
BLAST of CX047082 vs. ExPASy Swiss-Prot
Match: PMG1_YEAST (Phosphoglycerate mutase 1 OS=Saccharomyces cerevisiae GN=GPM1 PE=1 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 9.962e-15
Identity = 52/119 (43.70%), Postives = 64/119 (53.78%), Query Frame = 3
Query:  489 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRISNIPV--DMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWALNERMYG*LQG 839
            L+LVRHG+S WNEKNLFTG VDV L+ KG +EA  AG+ +    V  D++YTS L RA  TA +A+                +  R W            IPV  +W LNER YG LQG
Sbjct:    4 LVLVRHGQSEWNEKNLFTGWVDVKLSAKGQQEAARAGELLKEKKVYPDVLYTSKLSRAIQTANIAL---------------EKADRLW------------IPVNRSWRLNERHYGDLQG 95          
BLAST of CX047082 vs. ExPASy Swiss-Prot
Match: PGAM_DICDI (Probable phosphoglycerate mutase OS=Dictyostelium discoideum GN=gpmA PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.962e-15
Identity = 52/120 (43.33%), Postives = 63/120 (52.50%), Query Frame = 3
Query:  489 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRI--SNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWALNERMYG*LQGL 842
            L+L+RHGES WN++N FTG  DV L++KGV+EA EAGKR+  +    D+ YTS L RA  T                          W  I  E+     IPV   W LNERMYG LQGL
Sbjct:    5 LVLIRHGESTWNKENKFTGWTDVDLSEKGVQEAHEAGKRLLKAGFTFDIAYTSVLKRAIRT-------------------------LW--ILLEELNLYWIPVSRQWRLNERMYGSLQGL 97          
The following BLAST results are available for this feature:
BLAST of CX047082 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 251
Match NameE-valueIdentityDescription
GPMA_METVS3.197e-2143.332,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_CYAP72.145e-1740.322,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_METAC5.283e-1638.172,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA1_GLOVI1.537e-1540.322,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_METMA4.472e-1537.702,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_MYCLE5.841e-1542.522,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_MYCLB5.841e-1542.522,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_FRAAA7.628e-1541.672,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
PMG1_YEAST9.962e-1543.70Phosphoglycerate mutase 1 OS=Saccharomyces cerevis... [more]
PGAM_DICDI9.962e-1543.33Probable phosphoglycerate mutase OS=Dictyostelium ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_12A07_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12A07-A13-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047082 ID=CX047082; Name=CX047082; organism=Citrus sinensis; type=EST; length=843bp
GAACGAAGGTTTCACTTTCGCTTTCCCTCTTGCCTTGTGTTTGTTGCACT
TTAGTACTTAAATATTTTTGCCAGTTGAAAATGGACATGTAAAATTCCAA
CTTCTATATAATCACCTCCATCTTCTTCTCCGTCAACTTTCTTCATTATT
AGTCTCATTTGCTATTTCCTGCCTCGGTTTCTTCGCTCGGTTCCCGTCTA
TATAAAATGTCTGCACAGGTATTTCACCAAGCTATGGGGACTCTCCAATC
CAATCGACTTCTTAACAACTCTGGCACTCACCATGAACTTGGAAATATTA
GGGTGCAATTGATTCCAAAATGTTTCAAGCTTAATATTGAATTGTCAAGA
AACAGGAATTTTAGATTTGGGAAGAAGAATTTTGGCATAATTCAGGCCAC
AGCTTCTCAAACTTCAGTTATTGAATCTGCTTCATCTCCCTCAAATCACG
ACACCAGTGACTCCAAAAAGAAATCAAATGAAGCAGCTTTGATACTGGTT
CGACATGGTGAGTCTCTCTGGAATGAAAAGAACCTGTTTACAGGTTGCGT
TGATGTGCCATTAACCAAGAAGGGTGTAGAAGAGGCAATTGAAGCTGGAA
AGAGAATAAGCAACATACCTGTCGACATGATATATACATCAGCACTAATT
CGCGCGCAGATGACTGCTATGCTCGCCATGACACAGCACCGACGCAGGAA
GGTCCCTATCATTATGCATAATGAAAGTGAACAGGCAAGGACCTGGAGTC
AGATCTTCAGCGAAGACACCATGAAGCAGTCCATTCCCGTTGTAACAGCT
TGGGCATTGAATGAAAGAATGTATGGGTAATTACAGGGTCTAA
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