CX047082

Overview
NameCX047082
Unique NameCX047082
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length843
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX047082 vs. ExPASy Swiss-Prot
Match: GPMA_STAS1 (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=gpmA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.962e-15
Identity = 52/120 (43.33%), Postives = 70/120 (58.33%), Query Frame = 3 
Query:  489 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRI--SNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWALNERMYG*LQGL 842
            LIL RHG+S+WN +NLFTG  DV L+++G  EAI +GK++    I +D++YTS L RA  T     T H        + NES      +Q+F        IP++ +W LNER YG LQGL
Sbjct:    4 LILCRHGQSVWNAENLFTGWADVDLSEQGENEAITSGKKLKAQGIEIDIVYTSLLERAIKT-----TYH--------LLNES------NQLF--------IPIIKSWRLNERHYGGLQGL 96
[Close]
BLAST of CX047082 vs. ExPASy Swiss-Prot
Match: GPMA_STAES (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=gpmA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.962e-15
Identity = 51/120 (42.50%), Postives = 64/120 (53.33%), Query Frame = 3 
Query:  489 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRI--SNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWALNERMYG*LQGL 842
            LIL RHG+S WN KNLFTG  DV L+K+G+EEA  AGK+I  + I +D+ +TS L RA  T                           +Q     + +Q IPV  +W LNER YG LQGL
Sbjct:    4 LILCRHGQSEWNAKNLFTGWADVKLSKQGIEEAQSAGKKIYDNQIEIDIAFTSLLTRALET---------------------------TQYILAGSDQQWIPVYKSWRLNERHYGGLQGL 96
[Close]
BLAST of CX047082 vs. ExPASy Swiss-Prot
Match: GPMA_STAEQ (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=gpmA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.962e-15
Identity = 51/120 (42.50%), Postives = 64/120 (53.33%), Query Frame = 3 
Query:  489 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRI--SNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWALNERMYG*LQGL 842
            LIL RHG+S WN KNLFTG  DV L+K+G+EEA  AGK+I  + I +D+ +TS L RA  T                           +Q     + +Q IPV  +W LNER YG LQGL
Sbjct:    4 LILCRHGQSEWNAKNLFTGWADVKLSKQGIEEAQSAGKKIYGNQIEIDIAFTSLLTRALET---------------------------TQYILAGSDQQWIPVYKSWRLNERHYGGLQGL 96
[Close]
BLAST of CX047082 vs. ExPASy Swiss-Prot
Match: GPMA_PSEA6 (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=gpmA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.962e-15
Identity = 45/119 (37.82%), Postives = 70/119 (58.82%), Query Frame = 3 
Query:  489 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRISNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQ-SIPVVTAWALNERMYG*LQGL 842
            L L+RHG+S+WN++N FTG VDV L++ GV+EA  A + +S    D+ +TS L+RAQ T    +  +R+    + +H+   Q   W + F     ++  + +  +  LNER YG LQGL
Sbjct:    4 LTLIRHGQSIWNQQNRFTGWVDVSLSQSGVKEAQRAAQMLSQQRFDLAFTSELLRAQDTLYEILRHNRQCHQYVRIHDTGSQ---WYEHFEASPAEELELRIYVSQQLNERYYGDLQGL 119
[Close]
BLAST of CX047082 vs. ExPASy Swiss-Prot
Match: GPMA_MYCTU (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Mycobacterium tuberculosis GN=gpmA PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.699e-14
Identity = 53/125 (42.40%), Postives = 67/125 (53.60%), Query Frame = 3 
Query:  474 SNEAALILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRIS--NIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWALNERMYG*LQGL 842
            +N  +L+L+RHGES WN  NLFTG VDV LT KG  EA+ +G+ I+  ++  D++YTS L RA  TA LA+                   R W            IPV  +W LNER YG LQGL
Sbjct:    2 ANTGSLVLLRHGESDWNALNLFTGWVDVGLTDKGQAEAVRSGELIAEHDLLPDVLYTSLLRRAITTAHLAL---------------DSADRLW------------IPVRRSWRLNERHYGALQGL 99
[Close]
BLAST of CX047082 vs. ExPASy Swiss-Prot
Match: GPMA_MYCTA (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=gpmA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.699e-14
Identity = 53/125 (42.40%), Postives = 67/125 (53.60%), Query Frame = 3 
Query:  474 SNEAALILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRIS--NIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWALNERMYG*LQGL 842
            +N  +L+L+RHGES WN  NLFTG VDV LT KG  EA+ +G+ I+  ++  D++YTS L RA  TA LA+                   R W            IPV  +W LNER YG LQGL
Sbjct:    2 ANTGSLVLLRHGESDWNALNLFTGWVDVGLTDKGQAEAVRSGELIAEHDLLPDVLYTSLLRRAITTAHLAL---------------DSADRLW------------IPVRRSWRLNERHYGALQGL 99
[Close]
BLAST of CX047082 vs. ExPASy Swiss-Prot
Match: GPMA_MYCBT (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=gpmA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.699e-14
Identity = 53/125 (42.40%), Postives = 67/125 (53.60%), Query Frame = 3 
Query:  474 SNEAALILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRIS--NIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWALNERMYG*LQGL 842
            +N  +L+L+RHGES WN  NLFTG VDV LT KG  EA+ +G+ I+  ++  D++YTS L RA  TA LA+                   R W            IPV  +W LNER YG LQGL
Sbjct:    2 ANTGSLVLLRHGESDWNALNLFTGWVDVGLTDKGQAEAVRSGELIAEHDLLPDVLYTSLLRRAITTAHLAL---------------DSADRLW------------IPVRRSWRLNERHYGALQGL 99
[Close]
BLAST of CX047082 vs. ExPASy Swiss-Prot
Match: GPMA_MYCBP (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=gpmA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.699e-14
Identity = 53/125 (42.40%), Postives = 67/125 (53.60%), Query Frame = 3 
Query:  474 SNEAALILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRIS--NIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWALNERMYG*LQGL 842
            +N  +L+L+RHGES WN  NLFTG VDV LT KG  EA+ +G+ I+  ++  D++YTS L RA  TA LA+                   R W            IPV  +W LNER YG LQGL
Sbjct:    2 ANTGSLVLLRHGESDWNALNLFTGWVDVGLTDKGQAEAVRSGELIAEHDLLPDVLYTSLLRRAITTAHLAL---------------DSADRLW------------IPVRRSWRLNERHYGALQGL 99
[Close]
BLAST of CX047082 vs. ExPASy Swiss-Prot
Match: GPMA_MYCBO (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Mycobacterium bovis GN=gpmA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.699e-14
Identity = 53/125 (42.40%), Postives = 67/125 (53.60%), Query Frame = 3 
Query:  474 SNEAALILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRIS--NIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWALNERMYG*LQGL 842
            +N  +L+L+RHGES WN  NLFTG VDV LT KG  EA+ +G+ I+  ++  D++YTS L RA  TA LA+                   R W            IPV  +W LNER YG LQGL
Sbjct:    2 ANTGSLVLLRHGESDWNALNLFTGWVDVGLTDKGQAEAVRSGELIAEHDLLPDVLYTSLLRRAITTAHLAL---------------DSADRLW------------IPVRRSWRLNERHYGALQGL 99
[Close]
BLAST of CX047082 vs. ExPASy Swiss-Prot
Match: GPMA_VARPS (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Variovorax paradoxus (strain S110) GN=gpmA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.219e-14
Identity = 49/120 (40.83%), Postives = 62/120 (51.67%), Query Frame = 3 
Query:  489 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGK--RISNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWALNERMYG*LQGL 842
            L+L+RHGES WN +N FTG  DV LT+ G+E+A +AG+  +      D+ YTS L RA  T               + H   E  RTW            +PVV +W LNER YG LQGL
Sbjct:    4 LVLIRHGESTWNLENRFTGWTDVDLTETGIEQAKQAGRLLKAEGYDFDVAYTSVLKRATRT---------------LWHTLDELDRTW------------LPVVHSWRLNERHYGALQGL 96
The following BLAST results are available for this feature:
BLAST of CX047082 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 251
Match NameE-valueIdentityDescription
GPMA_STAS19.962e-1543.332,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_STAES9.962e-1542.502,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_STAEQ9.962e-1542.502,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_PSEA69.962e-1537.822,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_MYCTU1.699e-1442.402,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_MYCTA1.699e-1442.402,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_MYCBT1.699e-1442.402,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_MYCBP1.699e-1442.402,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_MYCBO1.699e-1442.402,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_VARPS2.219e-1440.832,3-bisphosphoglycerate-dependent phosphoglycerate... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_12A07_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12A07-A13-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047082 ID=CX047082; Name=CX047082; organism=Citrus sinensis; type=EST; length=843bp
GAACGAAGGTTTCACTTTCGCTTTCCCTCTTGCCTTGTGTTTGTTGCACT
TTAGTACTTAAATATTTTTGCCAGTTGAAAATGGACATGTAAAATTCCAA
CTTCTATATAATCACCTCCATCTTCTTCTCCGTCAACTTTCTTCATTATT
AGTCTCATTTGCTATTTCCTGCCTCGGTTTCTTCGCTCGGTTCCCGTCTA
TATAAAATGTCTGCACAGGTATTTCACCAAGCTATGGGGACTCTCCAATC
CAATCGACTTCTTAACAACTCTGGCACTCACCATGAACTTGGAAATATTA
GGGTGCAATTGATTCCAAAATGTTTCAAGCTTAATATTGAATTGTCAAGA
AACAGGAATTTTAGATTTGGGAAGAAGAATTTTGGCATAATTCAGGCCAC
AGCTTCTCAAACTTCAGTTATTGAATCTGCTTCATCTCCCTCAAATCACG
ACACCAGTGACTCCAAAAAGAAATCAAATGAAGCAGCTTTGATACTGGTT
CGACATGGTGAGTCTCTCTGGAATGAAAAGAACCTGTTTACAGGTTGCGT
TGATGTGCCATTAACCAAGAAGGGTGTAGAAGAGGCAATTGAAGCTGGAA
AGAGAATAAGCAACATACCTGTCGACATGATATATACATCAGCACTAATT
CGCGCGCAGATGACTGCTATGCTCGCCATGACACAGCACCGACGCAGGAA
GGTCCCTATCATTATGCATAATGAAAGTGAACAGGCAAGGACCTGGAGTC
AGATCTTCAGCGAAGACACCATGAAGCAGTCCATTCCCGTTGTAACAGCT
TGGGCATTGAATGAAAGAATGTATGGGTAATTACAGGGTCTAA
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