CX047082

Overview
NameCX047082
Unique NameCX047082
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length843
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX047082 vs. ExPASy Swiss-Prot
Match: GPMA_STAA8 (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Staphylococcus aureus (strain NCTC 8325) GN=gpmA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.219e-14
Identity = 48/120 (40.00%), Postives = 65/120 (54.17%), Query Frame = 3 
Query:  489 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRI--SNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWALNERMYG*LQGL 842
            LIL RHG+S WN KNLFTG  DV L+++G+ EA  AG+++  +NI +D+ +TS L RA  T    +T+ +                           +Q IPV  +W LNER YG LQGL
Sbjct:    4 LILCRHGQSEWNAKNLFTGWEDVNLSEQGINEATRAGEKVRENNIAIDVAFTSLLTRALDTTHYILTESK---------------------------QQWIPVYKSWRLNERHYGGLQGL 96
[Close]
BLAST of CX047082 vs. ExPASy Swiss-Prot
Match: GPMA_STAA3 (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Staphylococcus aureus (strain USA300) GN=gpmA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.219e-14
Identity = 48/120 (40.00%), Postives = 65/120 (54.17%), Query Frame = 3 
Query:  489 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRI--SNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWALNERMYG*LQGL 842
            LIL RHG+S WN KNLFTG  DV L+++G+ EA  AG+++  +NI +D+ +TS L RA  T    +T+ +                           +Q IPV  +W LNER YG LQGL
Sbjct:    4 LILCRHGQSEWNAKNLFTGWEDVNLSEQGINEATRAGEKVRENNIAIDVAFTSLLTRALDTTHYILTESK---------------------------QQWIPVYKSWRLNERHYGGLQGL 96
[Close]
BLAST of CX047082 vs. ExPASy Swiss-Prot
Match: GPMA_STAA2 (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Staphylococcus aureus (strain JH1) GN=gpmA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.219e-14
Identity = 48/120 (40.00%), Postives = 65/120 (54.17%), Query Frame = 3 
Query:  489 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRI--SNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWALNERMYG*LQGL 842
            LIL RHG+S WN KNLFTG  DV L+++G+ EA  AG+++  +NI +D+ +TS L RA  T    +T+ +                           +Q IPV  +W LNER YG LQGL
Sbjct:    4 LILCRHGQSEWNAKNLFTGWEDVNLSEQGINEATRAGEKVRENNIAIDVAFTSLLTRALDTTHYILTESK---------------------------QQWIPVYKSWRLNERHYGGLQGL 96
[Close]
BLAST of CX047082 vs. ExPASy Swiss-Prot
Match: GPMA_STAA1 (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=gpmA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.219e-14
Identity = 48/120 (40.00%), Postives = 65/120 (54.17%), Query Frame = 3 
Query:  489 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRI--SNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWALNERMYG*LQGL 842
            LIL RHG+S WN KNLFTG  DV L+++G+ EA  AG+++  +NI +D+ +TS L RA  T    +T+ +                           +Q IPV  +W LNER YG LQGL
Sbjct:    4 LILCRHGQSEWNAKNLFTGWEDVNLSEQGINEATRAGEKVRENNIAIDVAFTSLLTRALDTTHYILTESK---------------------------QQWIPVYKSWRLNERHYGGLQGL 96
[Close]
BLAST of CX047082 vs. ExPASy Swiss-Prot
Match: GPMA_LEIXX (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Leifsonia xyli subsp. xyli GN=gpmA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.899e-14
Identity = 53/121 (43.80%), Postives = 64/121 (52.89%), Query Frame = 3 
Query:  486 ALILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRI--SNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWALNERMYG*LQGL 842
            ALIL+RHG S WN +NLFTG VDV L+++GV EA  AG+ +  S +  D++YTS L RA  TA                H      R W            IPVV +W LNER YG LQGL
Sbjct:    6 ALILLRHGNSEWNRQNLFTGWVDVRLSEQGVAEAKRAGELLAESGLVPDILYTSLLTRAIQTA---------------NHALDAADRLW------------IPVVRSWRLNERHYGALQGL 99
[Close]
BLAST of CX047082 vs. ExPASy Swiss-Prot
Match: GPMA_MYCUA (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Mycobacterium ulcerans (strain Agy99) GN=gpmA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.944e-14
Identity = 51/120 (42.50%), Postives = 66/120 (55.00%), Query Frame = 3 
Query:  489 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRIS--NIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWALNERMYG*LQGL 842
            L+L+RHGES WN +NLFTG VDV LT+KG  EA+ +G+ ++  ++  D++YTS L RA  TA LA+                   R W            IPV  +W LNER YG LQGL
Sbjct:    7 LVLLRHGESDWNARNLFTGWVDVGLTEKGRAEAVRSGELLAEQDLLPDVLYTSLLRRAITTAHLAL---------------DSADRLW------------IPVRRSWRLNERHYGALQGL 99
[Close]
BLAST of CX047082 vs. ExPASy Swiss-Prot
Match: GPMA_MYCMM (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=gpmA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.944e-14
Identity = 51/120 (42.50%), Postives = 66/120 (55.00%), Query Frame = 3 
Query:  489 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRIS--NIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWALNERMYG*LQGL 842
            L+L+RHGES WN +NLFTG VDV LT+KG  EA+ +G+ ++  ++  D++YTS L RA  TA LA+                   R W            IPV  +W LNER YG LQGL
Sbjct:    7 LVLLRHGESDWNARNLFTGWVDVGLTEKGRAEAVRSGELLAEQDLLPDVLYTSLLRRAITTAHLAL---------------DSADRLW------------IPVRRSWRLNERHYGALQGL 99
[Close]
BLAST of CX047082 vs. ExPASy Swiss-Prot
Match: GPMA_MYCA1 (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Mycobacterium avium (strain 104) GN=gpmA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.434e-14
Identity = 52/122 (42.62%), Postives = 64/122 (52.46%), Query Frame = 3 
Query:  483 AALILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRIS--NIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWALNERMYG*LQGL 842
            A L+L+RHGES WN  NLFTG VDV LT KG  EA+ +G+ ++   +  D++YTS L RA  TA LA+                   R W            IPV  +W LNER YG LQGL
Sbjct:    5 ATLVLLRHGESEWNSLNLFTGWVDVGLTDKGRAEAVRSGELLAEQGLLPDVLYTSLLRRAITTAHLAL---------------DAADRLW------------IPVRRSWRLNERHYGALQGL 99
[Close]
BLAST of CX047082 vs. ExPASy Swiss-Prot
Match: GPMA_RHOFD (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=gpmA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.101e-13
Identity = 49/120 (40.83%), Postives = 59/120 (49.17%), Query Frame = 3 
Query:  489 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGK--RISNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWALNERMYG*LQGL 842
            L+L+RHGES WN  N FTG  DV LT  G+E+A  AG+  +      D+ YTS L RA  T               + H   E  RTW            +PVV +W LNER YG LQGL
Sbjct:    4 LVLIRHGESTWNLDNRFTGWTDVDLTPLGIEQAKNAGRLLKAEGYEFDVAYTSVLKRATRT---------------LWHVLDEMDRTW------------LPVVNSWRLNERHYGALQGL 96
[Close]
BLAST of CX047082 vs. ExPASy Swiss-Prot
Match: GPMA_DELAS (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Delftia acidovorans (strain DSM 14801 / SPH-1) GN=gpmA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.101e-13
Identity = 49/120 (40.83%), Postives = 59/120 (49.17%), Query Frame = 3 
Query:  489 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGK--RISNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWALNERMYG*LQGL 842
            L+L+RHGES WN +N FTG  DV LT  GVE+A  AG+  +      D+ YTS L RA  T               + H   E  RTW            +PV  +W LNER YG LQGL
Sbjct:    4 LVLIRHGESTWNLENRFTGWTDVDLTATGVEQAKNAGRLLKAEGYDFDLAYTSVLKRATRT---------------LWHTLDEMDRTW------------LPVQHSWRLNERHYGGLQGL 96
The following BLAST results are available for this feature:
BLAST of CX047082 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 251
Match NameE-valueIdentityDescription
GPMA_STAA82.219e-1440.002,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_STAA32.219e-1440.002,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_STAA22.219e-1440.002,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_STAA12.219e-1440.002,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_LEIXX2.899e-1443.802,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_MYCUA4.944e-1442.502,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_MYCMM4.944e-1442.502,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_MYCA18.434e-1442.622,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_RHOFD1.101e-1340.832,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_DELAS1.101e-1340.832,3-bisphosphoglycerate-dependent phosphoglycerate... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_12A07_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12A07-A13-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047082 ID=CX047082; Name=CX047082; organism=Citrus sinensis; type=EST; length=843bp
GAACGAAGGTTTCACTTTCGCTTTCCCTCTTGCCTTGTGTTTGTTGCACT
TTAGTACTTAAATATTTTTGCCAGTTGAAAATGGACATGTAAAATTCCAA
CTTCTATATAATCACCTCCATCTTCTTCTCCGTCAACTTTCTTCATTATT
AGTCTCATTTGCTATTTCCTGCCTCGGTTTCTTCGCTCGGTTCCCGTCTA
TATAAAATGTCTGCACAGGTATTTCACCAAGCTATGGGGACTCTCCAATC
CAATCGACTTCTTAACAACTCTGGCACTCACCATGAACTTGGAAATATTA
GGGTGCAATTGATTCCAAAATGTTTCAAGCTTAATATTGAATTGTCAAGA
AACAGGAATTTTAGATTTGGGAAGAAGAATTTTGGCATAATTCAGGCCAC
AGCTTCTCAAACTTCAGTTATTGAATCTGCTTCATCTCCCTCAAATCACG
ACACCAGTGACTCCAAAAAGAAATCAAATGAAGCAGCTTTGATACTGGTT
CGACATGGTGAGTCTCTCTGGAATGAAAAGAACCTGTTTACAGGTTGCGT
TGATGTGCCATTAACCAAGAAGGGTGTAGAAGAGGCAATTGAAGCTGGAA
AGAGAATAAGCAACATACCTGTCGACATGATATATACATCAGCACTAATT
CGCGCGCAGATGACTGCTATGCTCGCCATGACACAGCACCGACGCAGGAA
GGTCCCTATCATTATGCATAATGAAAGTGAACAGGCAAGGACCTGGAGTC
AGATCTTCAGCGAAGACACCATGAAGCAGTCCATTCCCGTTGTAACAGCT
TGGGCATTGAATGAAAGAATGTATGGGTAATTACAGGGTCTAA
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