CX047082

Overview
NameCX047082
Unique NameCX047082
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length843
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047082 vs. ExPASy Swiss-Prot
Match: GPMA_CLAMS (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667) GN=gpmA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.101e-13
Identity = 50/119 (42.02%), Postives = 64/119 (53.78%), Query Frame = 3
Query:  489 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRI--SNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWALNERMYG*LQG 839
            L+L+RHG S WN+KNLFTG VDV L+++GV E   AG+ +  S I  D+++TS LIRA  TA +A+                   R+W            IPV   W LNER YG LQG
Sbjct:    7 LVLLRHGNSDWNQKNLFTGWVDVELSEQGVAEGQRAGELLAESGILPDVLHTSVLIRAIDTANIAL---------------KRAGRSW------------IPVQRTWRLNERHYGALQG 98          
BLAST of CX047082 vs. ExPASy Swiss-Prot
Match: GPMA_CLAM3 (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) GN=gpmA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.101e-13
Identity = 50/119 (42.02%), Postives = 64/119 (53.78%), Query Frame = 3
Query:  489 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRI--SNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWALNERMYG*LQG 839
            L+L+RHG S WN+KNLFTG VDV L+++GV E   AG+ +  S I  D+++TS LIRA  TA +A+                   R+W            IPV   W LNER YG LQG
Sbjct:    7 LVLLRHGNSDWNQKNLFTGWVDVELSEQGVAEGQRAGELLAESGILPDVLHTSVLIRAIDTANIAL---------------KRAGRSW------------IPVQRTWRLNERHYGALQG 98          
BLAST of CX047082 vs. ExPASy Swiss-Prot
Match: GPMA_STRCO (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Streptomyces coelicolor GN=gpmA PE=1 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 1.439e-13
Identity = 49/119 (41.18%), Postives = 61/119 (51.26%), Query Frame = 3
Query:  489 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRISNIPV--DMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWALNERMYG*LQG 839
            LIL+RHGES WNEKNLFTG VDV LT KG +EA   G+ + +  +  D+++TS   RA  TA LA+    R  +P+  H                           W LNER YG LQG
Sbjct:    8 LILLRHGESEWNEKNLFTGWVDVNLTPKGEKEATRGGELLKDAGLLPDVVHTSVQKRAIRTAQLALEAADRHWIPVHRH---------------------------WRLNERHYGALQG 99          
BLAST of CX047082 vs. ExPASy Swiss-Prot
Match: GPMA_MYCPA (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Mycobacterium paratuberculosis GN=gpmA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.439e-13
Identity = 52/122 (42.62%), Postives = 63/122 (51.64%), Query Frame = 3
Query:  483 AALILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRIS--NIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWALNERMYG*LQGL 842
            A L+L+RHGES WN  NLFTG VDV LT KG  EA+ +G+ ++   +  D +YTS L RA  TA LA+                   R W            IPV  +W LNER YG LQGL
Sbjct:    5 ATLVLLRHGESEWNSLNLFTGWVDVGLTDKGRAEAVRSGELLAEQGLLPDALYTSLLRRAITTAHLAL---------------DAADRLW------------IPVRRSWRLNERHYGALQGL 99          
BLAST of CX047082 vs. ExPASy Swiss-Prot
Match: GPMA2_NITEU (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase 2 OS=Nitrosomonas europaea GN=gpmA2 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.879e-13
Identity = 48/120 (40.00%), Postives = 63/120 (52.50%), Query Frame = 3
Query:  489 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGK--RISNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWALNERMYG*LQGL 842
            L+L+RHGES+WN++N FTG  DV LT KG++EA EAG+  R +    D+ YTS L RA  T  +A+                E  + W+            P+   W LNER YG LQGL
Sbjct:    4 LVLLRHGESIWNQENRFTGWTDVDLTPKGLKEAEEAGRLLRENGFSFDIAYTSLLKRAIRTLWIAL---------------DEMDQMWT------------PIELNWRLNERHYGALQGL 96          
BLAST of CX047082 vs. ExPASy Swiss-Prot
Match: GPMA_STRGG (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=gpmA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.454e-13
Identity = 50/119 (42.02%), Postives = 63/119 (52.94%), Query Frame = 3
Query:  489 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRISNIPV--DMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWALNERMYG*LQG 839
            LIL+RHGES WN KNLFTG VDV LT+KG +EA+  G+ + +  +  D+++TS   RA  TA LA+                   R W            IPV  +W LNER YG LQG
Sbjct:    8 LILLRHGESEWNAKNLFTGWVDVNLTEKGEKEAVRGGELLKDAGLLPDVLHTSLQRRAIRTAQLAL---------------ESADRLW------------IPVRRSWRLNERHYGALQG 99          
BLAST of CX047082 vs. ExPASy Swiss-Prot
Match: GPMA_CORJK (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Corynebacterium jeikeium (strain K411) GN=gpmA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.454e-13
Identity = 51/129 (39.53%), Postives = 66/129 (51.16%), Query Frame = 3
Query:  462 SKKKSNEAALILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRISNIPVD--MIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWALNERMYG*LQGL 842
            S++ ++   LIL+RHG+S WN  N FTG VDV LT+KG  EA+  G+ I    ++  ++YTS L RA  TA +A+                   R W            IPVV  W LNER YG LQGL
Sbjct:    2 SEQNNSHGNLILLRHGQSEWNASNQFTGWVDVRLTEKGRAEAVRGGEMIKEAGLEPTILYTSLLRRAITTANIAL---------------DAADRHW------------IPVVRDWRLNERHYGALQGL 103          
BLAST of CX047082 vs. ExPASy Swiss-Prot
Match: GPMA_CHLT3 (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=gpmA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.454e-13
Identity = 51/120 (42.50%), Postives = 64/120 (53.33%), Query Frame = 3
Query:  489 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGK--RISNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWALNERMYG*LQGL 842
            L+L+RHGES+WN++N FTG  DV LT+KGV+EA  AG+  +   +  D+ YTS L RA  T  LA+             NE +               Q IPV   W LNER YG LQGL
Sbjct:    4 LVLLRHGESVWNKENRFTGWKDVDLTEKGVQEAKRAGEFMKKEGLDFDIAYTSVLKRAIRTLNLAL-------------NEMD--------------LQWIPVNKTWRLNERHYGALQGL 96          
BLAST of CX047082 vs. ExPASy Swiss-Prot
Match: PMGY_CANAL (Phosphoglycerate mutase OS=Candida albicans GN=GPM1 PE=1 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 3.205e-13
Identity = 49/119 (41.18%), Postives = 66/119 (55.46%), Query Frame = 3
Query:  489 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRI--SNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWALNERMYG*LQG 839
            L+LVRHG+S WNEKNLFTG VDV L++ G +EA  AG+ +  + I VD+++TS L RA  TA +A+                       Q++        +PV  +W LNER YG LQG
Sbjct:    4 LVLVRHGQSEWNEKNLFTGWVDVRLSETGQKEAKRAGELLKEAGINVDVLHTSKLSRAIQTANIALD-------------------AADQLY--------VPVKRSWRLNERHYGALQG 95          
BLAST of CX047082 vs. ExPASy Swiss-Prot
Match: GPMA_TREDE (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Treponema denticola GN=gpmA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.205e-13
Identity = 50/120 (41.67%), Postives = 60/120 (50.00%), Query Frame = 3
Query:  489 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRI--SNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWALNERMYG*LQGL 842
            L+LVRHGES WN+ NLFTG  DV L++KGVEEA E G  +       D+ YTS L RA  T    +               S+  R W            +PV+  W LNER YG LQGL
Sbjct:    3 LVLVRHGESEWNKLNLFTGWTDVDLSEKGVEEAKEGGTYLKKEGFDFDICYTSYLKRAIHTLNYIL---------------SQMDREW------------LPVIKTWKLNERHYGGLQGL 95          
The following BLAST results are available for this feature:
BLAST of CX047082 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 251
Match NameE-valueIdentityDescription
GPMA_CLAMS1.101e-1342.022,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_CLAM31.101e-1342.022,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_STRCO1.439e-1341.182,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_MYCPA1.439e-1342.622,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA2_NITEU1.879e-1340.002,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_STRGG2.454e-1342.022,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_CORJK2.454e-1339.532,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_CHLT32.454e-1342.502,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
PMGY_CANAL3.205e-1341.18Phosphoglycerate mutase OS=Candida albicans GN=GPM... [more]
GPMA_TREDE3.205e-1341.672,3-bisphosphoglycerate-dependent phosphoglycerate... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_12A07_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12A07-A13-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047082 ID=CX047082; Name=CX047082; organism=Citrus sinensis; type=EST; length=843bp
GAACGAAGGTTTCACTTTCGCTTTCCCTCTTGCCTTGTGTTTGTTGCACT
TTAGTACTTAAATATTTTTGCCAGTTGAAAATGGACATGTAAAATTCCAA
CTTCTATATAATCACCTCCATCTTCTTCTCCGTCAACTTTCTTCATTATT
AGTCTCATTTGCTATTTCCTGCCTCGGTTTCTTCGCTCGGTTCCCGTCTA
TATAAAATGTCTGCACAGGTATTTCACCAAGCTATGGGGACTCTCCAATC
CAATCGACTTCTTAACAACTCTGGCACTCACCATGAACTTGGAAATATTA
GGGTGCAATTGATTCCAAAATGTTTCAAGCTTAATATTGAATTGTCAAGA
AACAGGAATTTTAGATTTGGGAAGAAGAATTTTGGCATAATTCAGGCCAC
AGCTTCTCAAACTTCAGTTATTGAATCTGCTTCATCTCCCTCAAATCACG
ACACCAGTGACTCCAAAAAGAAATCAAATGAAGCAGCTTTGATACTGGTT
CGACATGGTGAGTCTCTCTGGAATGAAAAGAACCTGTTTACAGGTTGCGT
TGATGTGCCATTAACCAAGAAGGGTGTAGAAGAGGCAATTGAAGCTGGAA
AGAGAATAAGCAACATACCTGTCGACATGATATATACATCAGCACTAATT
CGCGCGCAGATGACTGCTATGCTCGCCATGACACAGCACCGACGCAGGAA
GGTCCCTATCATTATGCATAATGAAAGTGAACAGGCAAGGACCTGGAGTC
AGATCTTCAGCGAAGACACCATGAAGCAGTCCATTCCCGTTGTAACAGCT
TGGGCATTGAATGAAAGAATGTATGGGTAATTACAGGGTCTAA
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