CX047075

Overview
NameCX047075
Unique NameCX047075
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length483
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047075 vs. ExPASy Swiss-Prot
Match: PGK_PROM1 (Phosphoglycerate kinase OS=Prochlorococcus marinus (strain NATL1A) GN=pgk PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 6.692e-24
Identity = 58/71 (81.69%), Postives = 59/71 (83.10%), Query Frame = -1
Query:  271 KFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 483
            KFA GT AIA  LAELS +G  TIIGGGDSVAAVEK GLA  MSHISTGGGASLELLEGK LPGV ALDDA
Sbjct:  331 KFANGTNAIANTLAELSAQGCCTIIGGGDSVAAVEKAGLAKNMSHISTGGGASLELLEGKVLPGVSALDDA 401          
BLAST of CX047075 vs. ExPASy Swiss-Prot
Match: PGK_PROM4 (Phosphoglycerate kinase OS=Prochlorococcus marinus (strain MIT 9211) GN=pgk PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.141e-23
Identity = 57/70 (81.43%), Postives = 60/70 (85.71%), Query Frame = -1
Query:  274 KFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 483
            KFA GT +IA  L+ LS KG  TIIGGGDSVAAVEK GLADKMSHISTGGGASLELLEGKTLPGV ALD+
Sbjct:  331 KFANGTNSIATTLSVLSQKGCCTIIGGGDSVAAVEKAGLADKMSHISTGGGASLELLEGKTLPGVAALDE 400          
BLAST of CX047075 vs. ExPASy Swiss-Prot
Match: PGK_ACAM1 (Phosphoglycerate kinase OS=Acaryochloris marina (strain MBIC 11017) GN=pgk PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.141e-23
Identity = 54/71 (76.06%), Postives = 62/71 (87.32%), Query Frame = -1
Query:  271 KFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 483
            KFAAGT+A+A  LA ++  G  TIIGGGDSVAAVEKVG+A+KMSHISTGGGASLELLEGK LPG+ ALD+A
Sbjct:  331 KFAAGTDAVAHSLAAITETGADTIIGGGDSVAAVEKVGVAEKMSHISTGGGASLELLEGKVLPGIAALDEA 401          
BLAST of CX047075 vs. ExPASy Swiss-Prot
Match: PGKH_VOLCA (Phosphoglycerate kinase, chloroplastic OS=Volvox carteri GN=PGK PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 7.398e-23
Identity = 54/70 (77.14%), Postives = 60/70 (85.71%), Query Frame = -1
Query:  274 KFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 483
            KFA GT AIA  L+EL+ KG  TIIGGGDSVAAVE+ G+A+KMSHISTGGGASLELLEGK LPGV ALD+
Sbjct:  392 KFAVGTVAIANTLSELTPKGAITIIGGGDSVAAVEQAGVAEKMSHISTGGGASLELLEGKVLPGVAALDE 461          
BLAST of CX047075 vs. ExPASy Swiss-Prot
Match: PGK_PROM2 (Phosphoglycerate kinase OS=Prochlorococcus marinus (strain MIT 9215) GN=pgk PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 9.663e-23
Identity = 58/72 (80.56%), Postives = 61/72 (84.72%), Query Frame = -1
Query:  271 KFAAGTEAIAKKLAELSG-KGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 483
            KFA GT AIA  LA+LS    V TIIGGGDSVAAVEK GLA+KMSHISTGGGASLELLEGKTLPGV AL+DA
Sbjct:  331 KFAEGTNAIATTLADLSAFSEVCTIIGGGDSVAAVEKAGLAEKMSHISTGGGASLELLEGKTLPGVAALNDA 402          
BLAST of CX047075 vs. ExPASy Swiss-Prot
Match: PGK_PROMS (Phosphoglycerate kinase OS=Prochlorococcus marinus (strain AS9601) GN=pgk PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.262e-22
Identity = 58/72 (80.56%), Postives = 61/72 (84.72%), Query Frame = -1
Query:  271 KFAAGTEAIAKKLAELSG-KGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 483
            KFA GT AIA  LA+LS    V TIIGGGDSVAAVEK GLA+KMSHISTGGGASLELLEGKTLPGV AL+DA
Sbjct:  331 KFADGTNAIATTLADLSAFSEVCTIIGGGDSVAAVEKAGLAEKMSHISTGGGASLELLEGKTLPGVAALNDA 402          
BLAST of CX047075 vs. ExPASy Swiss-Prot
Match: PGK_PROM9 (Phosphoglycerate kinase OS=Prochlorococcus marinus (strain MIT 9312) GN=pgk PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.262e-22
Identity = 58/72 (80.56%), Postives = 61/72 (84.72%), Query Frame = -1
Query:  271 KFAAGTEAIAKKLAELSG-KGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 483
            KFA GT AIA  LA+LS    V TIIGGGDSVAAVEK GLA+KMSHISTGGGASLELLEGKTLPGV AL+DA
Sbjct:  331 KFADGTNAIATTLADLSAFSEVCTIIGGGDSVAAVEKAGLAEKMSHISTGGGASLELLEGKTLPGVAALNDA 402          
BLAST of CX047075 vs. ExPASy Swiss-Prot
Match: PGK_PROMP (Phosphoglycerate kinase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=pgk PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.648e-22
Identity = 58/72 (80.56%), Postives = 60/72 (83.33%), Query Frame = -1
Query:  271 KFAAGTEAIAKKLAELSG-KGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 483
            KFA GT AIA  LA+LS    V TIIGGGDSVAAVEK GLA+KMSHISTGGGASLELLEGKTLPGV AL DA
Sbjct:  331 KFAEGTNAIATTLADLSSFSEVCTIIGGGDSVAAVEKAGLAEKMSHISTGGGASLELLEGKTLPGVAALKDA 402          
BLAST of CX047075 vs. ExPASy Swiss-Prot
Match: PGK_CHLSY (Phosphoglycerate kinase OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=pgk PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 2.811e-22
Identity = 51/70 (72.86%), Postives = 58/70 (82.86%), Query Frame = -1
Query:  271 FAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 480
            FA GT AIA+ +AE +  G  TI+GGGDSVAAVE+ GLADKMSH+STGGGASLELLEG+ LPGV AL DA
Sbjct:  330 FAVGTRAIAQAMAEAAANGAITIVGGGDSVAAVEQAGLADKMSHVSTGGGASLELLEGRVLPGVAALQDA 399          
BLAST of CX047075 vs. ExPASy Swiss-Prot
Match: PGK_CHLAD (Phosphoglycerate kinase OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=pgk PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 2.811e-22
Identity = 51/70 (72.86%), Postives = 59/70 (84.29%), Query Frame = -1
Query:  271 FAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 480
            FAAGT AIA+ +AE S  G  TI+GGGDSVAAVE+ GLA+KM+H+STGGGASLELLEG+ LPGV AL DA
Sbjct:  330 FAAGTRAIAQAMAEASANGAITIVGGGDSVAAVEQAGLAEKMAHVSTGGGASLELLEGRVLPGVAALQDA 399          
The following BLAST results are available for this feature:
BLAST of CX047075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_PROM16.692e-2481.69Phosphoglycerate kinase OS=Prochlorococcus marinus... [more]
PGK_PROM41.141e-2381.43Phosphoglycerate kinase OS=Prochlorococcus marinus... [more]
PGK_ACAM11.141e-2376.06Phosphoglycerate kinase OS=Acaryochloris marina (s... [more]
PGKH_VOLCA7.398e-2377.14Phosphoglycerate kinase, chloroplastic OS=Volvox c... [more]
PGK_PROM29.663e-2380.56Phosphoglycerate kinase OS=Prochlorococcus marinus... [more]
PGK_PROMS1.262e-2280.56Phosphoglycerate kinase OS=Prochlorococcus marinus... [more]
PGK_PROM91.262e-2280.56Phosphoglycerate kinase OS=Prochlorococcus marinus... [more]
PGK_PROMP1.648e-2280.56Phosphoglycerate kinase OS=Prochlorococcus marinus... [more]
PGK_CHLSY2.811e-2272.86Phosphoglycerate kinase OS=Chloroflexus aurantiacu... [more]
PGK_CHLAD2.811e-2272.86Phosphoglycerate kinase OS=Chloroflexus aggregans ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_12A03_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12A03-A5-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047075 ID=CX047075; Name=CX047075; organism=Citrus sinensis; type=EST; length=483bp
TTTTTTTTTTTTTTTTTCAGAAAGGAACAAGAACTTGACTTCAGGAAACT
TATAGCCTTACCATCACAATGTTCCAAAATGGGATCAAATCCAGAAAAAT
GCATCACCATTGATGCCTGTGAGAAAGAATTTATTTTTACTCTTACAGCA
TCTACAAAACCAACTCTAATGATAAAGTTTAACTTTTATCCACTCTGGGC
TGACAACCAGCCACACATACAACTCTGGAAATGGCACATTTAAAAAAGGA
AAGTCCAGGAACTGGGTTTAAGCATCATCAAGAGCAAGCACACCAGGGAG
TGTTTTGCCCTCAAGGAGCTCTAAGCTGGCTCCACCTCCAGTGGAGATAT
GGCTCATCTTGTCAGCCAGACCAACCTTCTCTACGGCTGCAACTGAGTCA
CCTCCTCCAATGATTGTGGTCACTCCCTTCCCGCTGAGCTCCGCAAGCTT
CTTGGCAATTGCCTCAGTGCCAGCAGCAAATTT
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