CX047074

Overview
NameCX047074
Unique NameCX047074
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length483
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047074 vs. ExPASy Swiss-Prot
Match: PGK_LACS1 (Phosphoglycerate kinase OS=Lactobacillus salivarius subsp. salivarius (strain UCC118) GN=pgk PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 4.557e-17
Identity = 44/69 (63.77%), Postives = 54/69 (78.26%), Query Frame = 2
Query:    5 FAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 211
            FA GT  + K L  LS    TTI+GGGDS AAV+++G+ADK++HISTGGGASLE LEGKTLPG+ A+ D
Sbjct:  333 FAKGTLEVGKFLGTLSD--ATTIVGGGDSTAAVQQLGVADKLTHISTGGGASLEYLEGKTLPGIAAVSD 399          
BLAST of CX047074 vs. ExPASy Swiss-Prot
Match: PGK_GLOVI (Phosphoglycerate kinase OS=Gloeobacter violaceus GN=pgk PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 4.557e-17
Identity = 44/70 (62.86%), Postives = 53/70 (75.71%), Query Frame = 2
Query:    5 FAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 214
            F+ GT A+A  LAE       +I+GGGDS +A EK G+ DK+SH+STGGGASLE LEGKTLPGV ALD+A
Sbjct:  341 FSKGTFAVAHALAESDN---LSIVGGGDSASAAEKAGVVDKLSHVSTGGGASLEFLEGKTLPGVAALDEA 407          
BLAST of CX047074 vs. ExPASy Swiss-Prot
Match: PGK_CLOPS (Phosphoglycerate kinase OS=Clostridium perfringens (strain SM101 / Type A) GN=pgk PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 4.557e-17
Identity = 46/69 (66.67%), Postives = 51/69 (73.91%), Query Frame = 2
Query:    5 FAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 211
            F  GT A+AK +AE      TTIIGGGDS AAV  +G  DKMSHISTGGGASLE LEGK LPG+ AL+D
Sbjct:  331 FNKGTIAVAKAMAEADA---TTIIGGGDSAAAVNILGFGDKMSHISTGGGASLEFLEGKVLPGIAALND 396          
BLAST of CX047074 vs. ExPASy Swiss-Prot
Match: PGK_CLOPE (Phosphoglycerate kinase OS=Clostridium perfringens GN=pgk PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 4.557e-17
Identity = 46/69 (66.67%), Postives = 51/69 (73.91%), Query Frame = 2
Query:    5 FAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 211
            F  GT A+AK +AE      TTIIGGGDS AAV  +G  DKMSHISTGGGASLE LEGK LPG+ AL+D
Sbjct:  331 FNKGTIAVAKAMAEADA---TTIIGGGDSAAAVNILGFGDKMSHISTGGGASLEFLEGKVLPGIAALND 396          
BLAST of CX047074 vs. ExPASy Swiss-Prot
Match: PGK_CLOP1 (Phosphoglycerate kinase OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=pgk PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 4.557e-17
Identity = 46/69 (66.67%), Postives = 51/69 (73.91%), Query Frame = 2
Query:    5 FAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 211
            F  GT A+AK +AE      TTIIGGGDS AAV  +G  DKMSHISTGGGASLE LEGK LPG+ AL+D
Sbjct:  331 FNKGTIAVAKAMAEADA---TTIIGGGDSAAAVNILGFGDKMSHISTGGGASLEFLEGKVLPGIAALND 396          
BLAST of CX047074 vs. ExPASy Swiss-Prot
Match: PGK_SYMTH (Phosphoglycerate kinase OS=Symbiobacterium thermophilum GN=pgk PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 5.952e-17
Identity = 44/67 (65.67%), Postives = 52/67 (77.61%), Query Frame = 2
Query:    5 FAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLAL 205
            FA GT A+A+ +A+  G    TI+GGGDSVAAVE  GLAD+M+H+STGGGASLE LEGK LPGV  L
Sbjct:  325 FARGTFAVAQAMADCEG---VTIVGGGDSVAAVEAAGLADRMTHVSTGGGASLEFLEGKELPGVACL 388          
BLAST of CX047074 vs. ExPASy Swiss-Prot
Match: PGK_NOCFA (Phosphoglycerate kinase OS=Nocardia farcinica GN=pgk PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 5.952e-17
Identity = 43/71 (60.56%), Postives = 52/71 (73.24%), Query Frame = 2
Query:    2 KFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGL-ADKMSHISTGGGASLELLEGKTLPGVLALDD 211
            KFAAGT  +A+ +   +GKG  T++GGGDS AAV  +GL  D  SHISTGGGASLE LEGK LPG+  L+D
Sbjct:  334 KFAAGTRGVAEAIVAATGKGAFTVVGGGDSAAAVRALGLPEDGFSHISTGGGASLEYLEGKELPGISVLED 404          
BLAST of CX047074 vs. ExPASy Swiss-Prot
Match: PGK_MACCJ (Phosphoglycerate kinase OS=Macrococcus caseolyticus (strain JCSC5402) GN=pgk PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 5.952e-17
Identity = 44/69 (63.77%), Postives = 51/69 (73.91%), Query Frame = 2
Query:    5 FAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 211
            FA GT  + K +AEL  KG TTIIGGGDS AA   +G ADK +HISTGGGASLE LEGK LPG+ ++ D
Sbjct:  329 FAKGTVGVCKAIAEL--KGATTIIGGGDSAAAAMDLGFADKFTHISTGGGASLEYLEGKELPGIKSISD 395          
BLAST of CX047074 vs. ExPASy Swiss-Prot
Match: PGK_CARHZ (Phosphoglycerate kinase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=pgk PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 5.952e-17
Identity = 44/69 (63.77%), Postives = 54/69 (78.26%), Query Frame = 2
Query:    5 FAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 211
            F  GT A+A+ +AE    G  +++GGGDSVAAVEK G+ADK++HISTGGGASLE LEGK LPGV  L+D
Sbjct:  328 FDRGTVAVAEAVAE---SGALSVVGGGDSVAAVEKAGVADKITHISTGGGASLEFLEGKKLPGVEVLND 393          
BLAST of CX047074 vs. ExPASy Swiss-Prot
Match: PGK_RHOSR (Phosphoglycerate kinase OS=Rhodococcus sp. (strain RHA1) GN=pgk PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 7.773e-17
Identity = 42/70 (60.00%), Postives = 54/70 (77.14%), Query Frame = 2
Query:    2 KFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGL-ADKMSHISTGGGASLELLEGKTLPGVLALD 208
            KFAAGT+ +A+ + E +GKG  +++GGGDS AAV ++GL  D  SHISTGGGASLE LEGK LPG+  L+
Sbjct:  333 KFAAGTKGVAEAIIEATGKGAYSVVGGGDSAAAVRQLGLPEDGFSHISTGGGASLEYLEGKELPGIAVLE 402          
The following BLAST results are available for this feature:
BLAST of CX047074 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_LACS14.557e-1763.77Phosphoglycerate kinase OS=Lactobacillus salivariu... [more]
PGK_GLOVI4.557e-1762.86Phosphoglycerate kinase OS=Gloeobacter violaceus G... [more]
PGK_CLOPS4.557e-1766.67Phosphoglycerate kinase OS=Clostridium perfringens... [more]
PGK_CLOPE4.557e-1766.67Phosphoglycerate kinase OS=Clostridium perfringens... [more]
PGK_CLOP14.557e-1766.67Phosphoglycerate kinase OS=Clostridium perfringens... [more]
PGK_SYMTH5.952e-1765.67Phosphoglycerate kinase OS=Symbiobacterium thermop... [more]
PGK_NOCFA5.952e-1760.56Phosphoglycerate kinase OS=Nocardia farcinica GN=p... [more]
PGK_MACCJ5.952e-1763.77Phosphoglycerate kinase OS=Macrococcus caseolyticu... [more]
PGK_CARHZ5.952e-1763.77Phosphoglycerate kinase OS=Carboxydothermus hydrog... [more]
PGK_RHOSR7.773e-1760.00Phosphoglycerate kinase OS=Rhodococcus sp. (strain... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS09_12A03_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12A03-A5-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047074 ID=CX047074; Name=CX047074; organism=Citrus sinensis; type=EST; length=483bp
TAAATTTGCTGCTGGCACTGAGGCAATTGCCAAGAAGCTTGCGGAGCTCA
GCGGGAAGGGAGTGACCACAATCATTGGAGGAGGTGACTCAGTTGCAGCC
GTAGAGAAGGTTGGTCTGGCTGACAAGATGAGCCATATCTCCACTGGAGG
TGGAGCCAGCTTAGAGCTCCTTGAGGGCAAAACACTCCCTGGTGTGCTTG
CTCTTGATGATGCTTAAACCCAGTTCCTGGACTTTCCTTTTTTAAATGTG
CCATTTCCAGAGTTGTATGTGTGGCTGGTTGTCAGCCCAGAGTGGATAAA
AGTTAAACTTTATCATTAGAGTTGGTTTTGTAGATGCTGTAAGAGTAAAA
ATAAATTCTTTCTCACAGGCATCAATGGTGATGCATTTTTCTGGATTTGA
TCCCATTTTGGAACATTGTGATGGTAAGGCTATAAGTTTCCTGAAGTCAA
GTTCTTGTTCCTTTCTGAAAAAAAAAAAAAAAA
back to top