CX047074

Overview
NameCX047074
Unique NameCX047074
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length483
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047074 vs. ExPASy Swiss-Prot
Match: PGK_RHOOB (Phosphoglycerate kinase OS=Rhodococcus opacus (strain B4) GN=pgk PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 7.773e-17
Identity = 42/70 (60.00%), Postives = 54/70 (77.14%), Query Frame = 2
Query:    2 KFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGL-ADKMSHISTGGGASLELLEGKTLPGVLALD 208
            KFAAGT+ +A+ + E +GKG  +++GGGDS AAV ++GL  D  SHISTGGGASLE LEGK LPG+  L+
Sbjct:  333 KFAAGTKGVAEAIIEATGKGAYSVVGGGDSAAAVRQLGLPEDGFSHISTGGGASLEYLEGKELPGIAVLE 402          
BLAST of CX047074 vs. ExPASy Swiss-Prot
Match: PGK_CHICK (Phosphoglycerate kinase OS=Gallus gallus GN=PGK PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 1.015e-16
Identity = 42/68 (61.76%), Postives = 51/68 (75.00%), Query Frame = 2
Query:    2 KFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLAL 205
            KF+ GT+A+  K+ E++GKG  TIIGGGD+     K    DK+SH+STGGGASLELLEGK LPGV AL
Sbjct:  347 KFSKGTKALMDKVVEVTGKGCITIIGGGDTATCCAKWNTEDKVSHVSTGGGASLELLEGKVLPGVDAL 414          
BLAST of CX047074 vs. ExPASy Swiss-Prot
Match: PGK_YEAST (Phosphoglycerate kinase OS=Saccharomyces cerevisiae GN=PGK1 PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 1.326e-16
Identity = 41/70 (58.57%), Postives = 52/70 (74.29%), Query Frame = 2
Query:    2 KFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 211
            KFAAGT+A+  ++ + S  G T IIGGGD+    +K G+ DK+SH+STGGGASLELLEGK LPGV  L +
Sbjct:  345 KFAAGTKALLDEVVKSSAAGNTVIIGGGDTATVAKKYGVTDKISHVSTGGGASLELLEGKELPGVAFLSE 414          
BLAST of CX047074 vs. ExPASy Swiss-Prot
Match: PGK_EXISA (Phosphoglycerate kinase OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=pgk PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.326e-16
Identity = 45/70 (64.29%), Postives = 53/70 (75.71%), Query Frame = 2
Query:    2 KFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 211
            K+A GT+ +A+ LA+       +IIGGGDS AA  K GLADKMSHISTGGGASLE +EGK LPGV AL+D
Sbjct:  327 KYANGTKGVAQALAD---SDAYSIIGGGDSAAAAAKFGLADKMSHISTGGGASLEFMEGKKLPGVEALND 393          
BLAST of CX047074 vs. ExPASy Swiss-Prot
Match: PGKG_TRYCO (Phosphoglycerate kinase, glycosomal OS=Trypanosoma congolense GN=56PGK PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.732e-16
Identity = 43/70 (61.43%), Postives = 55/70 (78.57%), Query Frame = 2
Query:    5 FAAGTEAIAKKLAELSGK-GVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 211
            ++ GT A+AK + + + K G+ +IIGGGDS +A E+ G A +MSH+STGGGASLELLEGKTLPGV  LDD
Sbjct:  438 YSKGTFAVAKAMGDCTQKNGLMSIIGGGDSASAAEQSGEATRMSHVSTGGGASLELLEGKTLPGVAILDD 507          
BLAST of CX047074 vs. ExPASy Swiss-Prot
Match: PGK_SCHMA (Phosphoglycerate kinase OS=Schistosoma mansoni GN=PGK PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.262e-16
Identity = 42/71 (59.15%), Postives = 51/71 (71.83%), Query Frame = 2
Query:    2 KFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 214
            KFA GT+A   ++ + +  G TTIIGGGD+     K    DK+SH+STGGGASLELLEGK LPGV+AL DA
Sbjct:  345 KFATGTKAAMDEVVKATKNGATTIIGGGDTATCCAKWDTEDKVSHVSTGGGASLELLEGKQLPGVVALTDA 415          
BLAST of CX047074 vs. ExPASy Swiss-Prot
Match: PGK_LACBA (Phosphoglycerate kinase OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170) GN=pgk PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.262e-16
Identity = 43/69 (62.32%), Postives = 53/69 (76.81%), Query Frame = 2
Query:    5 FAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 211
            +A GT  I K L  L+     TI+GGGDS AAV+++G+ADK+SHISTGGGASLE LEGKTLPG+ A+ D
Sbjct:  333 YAEGTLEIGKFLGTLTN--AKTIVGGGDSTAAVQQLGVADKLSHISTGGGASLEYLEGKTLPGIAAISD 399          
BLAST of CX047074 vs. ExPASy Swiss-Prot
Match: PGK_CLOBB (Phosphoglycerate kinase OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=pgk PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.262e-16
Identity = 44/69 (63.77%), Postives = 51/69 (73.91%), Query Frame = 2
Query:    5 FAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 211
            F  GT A+AK +A+      TTIIGGGDS AAV  +G  DKM+HISTGGGASLE LEGK LPG+ AL+D
Sbjct:  331 FNKGTIAVAKAMAD---SNATTIIGGGDSAAAVNILGFGDKMTHISTGGGASLEFLEGKVLPGISALND 396          
BLAST of CX047074 vs. ExPASy Swiss-Prot
Match: PGK_CLOBA (Phosphoglycerate kinase OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=pgk PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.262e-16
Identity = 44/69 (63.77%), Postives = 51/69 (73.91%), Query Frame = 2
Query:    5 FAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 211
            F  GT A+AK +A+      TTIIGGGDS AAV  +G  DKM+HISTGGGASLE LEGK LPG+ AL+D
Sbjct:  331 FNKGTIAVAKAMAD---SNATTIIGGGDSAAAVNILGFGDKMTHISTGGGASLEFLEGKVLPGISALND 396          
BLAST of CX047074 vs. ExPASy Swiss-Prot
Match: PGK_LEPBP (Phosphoglycerate kinase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=pgk PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.954e-16
Identity = 42/68 (61.76%), Postives = 53/68 (77.94%), Query Frame = 2
Query:    2 KFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLAL 205
            KF+ GT  IAK +++   K   T++GGGDS+AAV K G+ADK++HISTGGGASLE LEG+TLPGV  L
Sbjct:  326 KFSKGTIEIAKAISKSKAK---TVVGGGDSIAAVNKAGVADKITHISTGGGASLEFLEGRTLPGVQCL 390          
The following BLAST results are available for this feature:
BLAST of CX047074 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_RHOOB7.773e-1760.00Phosphoglycerate kinase OS=Rhodococcus opacus (str... [more]
PGK_CHICK1.015e-1661.76Phosphoglycerate kinase OS=Gallus gallus GN=PGK PE... [more]
PGK_YEAST1.326e-1658.57Phosphoglycerate kinase OS=Saccharomyces cerevisia... [more]
PGK_EXISA1.326e-1664.29Phosphoglycerate kinase OS=Exiguobacterium sp. (st... [more]
PGKG_TRYCO1.732e-1661.43Phosphoglycerate kinase, glycosomal OS=Trypanosoma... [more]
PGK_SCHMA2.262e-1659.15Phosphoglycerate kinase OS=Schistosoma mansoni GN=... [more]
PGK_LACBA2.262e-1662.32Phosphoglycerate kinase OS=Lactobacillus brevis (s... [more]
PGK_CLOBB2.262e-1663.77Phosphoglycerate kinase OS=Clostridium botulinum (... [more]
PGK_CLOBA2.262e-1663.77Phosphoglycerate kinase OS=Clostridium botulinum (... [more]
PGK_LEPBP2.954e-1661.76Phosphoglycerate kinase OS=Leptospira biflexa sero... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS09_12A03_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12A03-A5-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047074 ID=CX047074; Name=CX047074; organism=Citrus sinensis; type=EST; length=483bp
TAAATTTGCTGCTGGCACTGAGGCAATTGCCAAGAAGCTTGCGGAGCTCA
GCGGGAAGGGAGTGACCACAATCATTGGAGGAGGTGACTCAGTTGCAGCC
GTAGAGAAGGTTGGTCTGGCTGACAAGATGAGCCATATCTCCACTGGAGG
TGGAGCCAGCTTAGAGCTCCTTGAGGGCAAAACACTCCCTGGTGTGCTTG
CTCTTGATGATGCTTAAACCCAGTTCCTGGACTTTCCTTTTTTAAATGTG
CCATTTCCAGAGTTGTATGTGTGGCTGGTTGTCAGCCCAGAGTGGATAAA
AGTTAAACTTTATCATTAGAGTTGGTTTTGTAGATGCTGTAAGAGTAAAA
ATAAATTCTTTCTCACAGGCATCAATGGTGATGCATTTTTCTGGATTTGA
TCCCATTTTGGAACATTGTGATGGTAAGGCTATAAGTTTCCTGAAGTCAA
GTTCTTGTTCCTTTCTGAAAAAAAAAAAAAAAA
back to top