CX047074

Overview
NameCX047074
Unique NameCX047074
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length483
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047074 vs. ExPASy Swiss-Prot
Match: PGK_LACC3 (Phosphoglycerate kinase OS=Lactobacillus casei (strain ATCC 334) GN=pgk PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 6.581e-16
Identity = 41/69 (59.42%), Postives = 53/69 (76.81%), Query Frame = 2
Query:    5 FAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 211
            +A GT  + + L +L  K  TTIIGGGDS AA +++G+A K++HISTGGGASLE LEGKTLPG+ A+ D
Sbjct:  329 YAEGTLEVGRALGDL--KDATTIIGGGDSTAAAKQLGIAPKITHISTGGGASLEYLEGKTLPGIAAISD 395          
BLAST of CX047074 vs. ExPASy Swiss-Prot
Match: PGK_DEIRA (Phosphoglycerate kinase OS=Deinococcus radiodurans GN=pgk PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 6.581e-16
Identity = 41/68 (60.29%), Postives = 53/68 (77.94%), Query Frame = 2
Query:    2 KFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLAL 205
            +FAAGT A+A  +  L  +  T ++GGGDSV+A+ K G AD++ HISTGGGASLELLEGK LPGV+A+
Sbjct:  344 QFAAGTNAVAAAVGSLKDQAYT-VVGGGDSVSAINKSGKADQIDHISTGGGASLELLEGKELPGVVAM 410          
BLAST of CX047074 vs. ExPASy Swiss-Prot
Match: PGK_BEUC1 (Phosphoglycerate kinase OS=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) GN=pgk PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 6.581e-16
Identity = 42/70 (60.00%), Postives = 51/70 (72.86%), Query Frame = 2
Query:    5 FAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADK-MSHISTGGGASLELLEGKTLPGVLALDD 211
            FAAGT A+A+ L + +  G  TI+GGGDS AAV  +G  +   SHISTGGGASLE LEGKTLPG+  L+D
Sbjct:  330 FAAGTRAVAQGLTDATAAGAFTIVGGGDSAAAVRSLGFDEAGFSHISTGGGASLEFLEGKTLPGLAVLED 399          
BLAST of CX047074 vs. ExPASy Swiss-Prot
Match: PGK_NEUCR (Phosphoglycerate kinase OS=Neurospora crassa GN=pgk-1 PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 8.595e-16
Identity = 40/70 (57.14%), Postives = 50/70 (71.43%), Query Frame = 2
Query:    2 KFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 211
            KFA GT+A      + + +G T IIGGGD+     K G+ DK+SH+STGGGASLELLEGK LPGV+AL +
Sbjct:  347 KFAKGTKATLDACVKAAEEGRTVIIGGGDTATVAAKYGVEDKLSHVSTGGGASLELLEGKALPGVVALSE 416          
BLAST of CX047074 vs. ExPASy Swiss-Prot
Match: PGK_LEPBJ (Phosphoglycerate kinase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=pgk PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 8.595e-16
Identity = 41/68 (60.29%), Postives = 53/68 (77.94%), Query Frame = 2
Query:    2 KFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLAL 205
            KFA GT AIAK +++   K   T++GGGDS+AA+ K  +ADK++HISTGGGASLE +EG+ LPGV AL
Sbjct:  326 KFAGGTMAIAKAISKSKAK---TVVGGGDSIAAINKAKVADKITHISTGGGASLEFMEGRKLPGVEAL 390          
BLAST of CX047074 vs. ExPASy Swiss-Prot
Match: PGK_DESDA (Phosphoglycerate kinase OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) GN=pgk PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 8.595e-16
Identity = 43/69 (62.32%), Postives = 53/69 (76.81%), Query Frame = 2
Query:    5 FAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 211
            F  GT+A+A+ L++        ++GGGDSVAAVEK GLAD+M +ISTGGGASLELLEGK LP V AL+D
Sbjct:  322 FGDGTKALAEYLSDSKA---FVVVGGGDSVAAVEKYGLADRMGYISTGGGASLELLEGKKLPSVAALED 387          
BLAST of CX047074 vs. ExPASy Swiss-Prot
Match: PGK_CLOK5 (Phosphoglycerate kinase OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=pgk PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 8.595e-16
Identity = 42/69 (60.87%), Postives = 52/69 (75.36%), Query Frame = 2
Query:    5 FAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 211
            FA GT A+AK +AE    G  TIIGGGDS AA+ ++G  DKM+HISTGGGASLE L G+ LPG+ AL++
Sbjct:  332 FAKGTFAVAKAMAE---SGAITIIGGGDSAAAINQLGFGDKMTHISTGGGASLEFLGGEELPGISALNN 397          
BLAST of CX047074 vs. ExPASy Swiss-Prot
Match: PGK_CLOK1 (Phosphoglycerate kinase OS=Clostridium kluyveri (strain NBRC 12016) GN=pgk PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 8.595e-16
Identity = 42/69 (60.87%), Postives = 52/69 (75.36%), Query Frame = 2
Query:    5 FAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 211
            FA GT A+AK +AE    G  TIIGGGDS AA+ ++G  DKM+HISTGGGASLE L G+ LPG+ AL++
Sbjct:  332 FAKGTFAVAKAMAE---SGAITIIGGGDSAAAINQLGFGDKMTHISTGGGASLEFLGGEELPGISALNN 397          
BLAST of CX047074 vs. ExPASy Swiss-Prot
Match: PGK_CLOBM (Phosphoglycerate kinase OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=pgk PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 8.595e-16
Identity = 44/69 (63.77%), Postives = 49/69 (71.01%), Query Frame = 2
Query:    5 FAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 211
            FA GT  +AK +A+       TIIGGGDS AAV   G  DKMSHISTGGGASLE LEGK LPG+ AL+D
Sbjct:  332 FANGTIEVAKAMAD---SDAVTIIGGGDSAAAVNIFGFGDKMSHISTGGGASLEFLEGKELPGIAALND 397          
BLAST of CX047074 vs. ExPASy Swiss-Prot
Match: PGK_CAEEL (Probable phosphoglycerate kinase OS=Caenorhabditis elegans GN=pgk-1 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 8.595e-16
Identity = 40/71 (56.34%), Postives = 51/71 (71.83%), Query Frame = 2
Query:    2 KFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 214
            KFA GT+++  ++ + +  G  TIIGGGD+  A +K    DK+SH+STGGGASLELLEGK LPGV AL  A
Sbjct:  346 KFATGTKSLMDEVVKATAAGAITIIGGGDTATAAKKYNTEDKVSHVSTGGGASLELLEGKVLPGVDALSPA 416          
The following BLAST results are available for this feature:
BLAST of CX047074 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_LACC36.581e-1659.42Phosphoglycerate kinase OS=Lactobacillus casei (st... [more]
PGK_DEIRA6.581e-1660.29Phosphoglycerate kinase OS=Deinococcus radiodurans... [more]
PGK_BEUC16.581e-1660.00Phosphoglycerate kinase OS=Beutenbergia cavernae (... [more]
PGK_NEUCR8.595e-1657.14Phosphoglycerate kinase OS=Neurospora crassa GN=pg... [more]
PGK_LEPBJ8.595e-1660.29Phosphoglycerate kinase OS=Leptospira borgpetersen... [more]
PGK_DESDA8.595e-1662.32Phosphoglycerate kinase OS=Desulfovibrio desulfuri... [more]
PGK_CLOK58.595e-1660.87Phosphoglycerate kinase OS=Clostridium kluyveri (s... [more]
PGK_CLOK18.595e-1660.87Phosphoglycerate kinase OS=Clostridium kluyveri (s... [more]
PGK_CLOBM8.595e-1663.77Phosphoglycerate kinase OS=Clostridium botulinum (... [more]
PGK_CAEEL8.595e-1656.34Probable phosphoglycerate kinase OS=Caenorhabditis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_12A03_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12A03-A5-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047074 ID=CX047074; Name=CX047074; organism=Citrus sinensis; type=EST; length=483bp
TAAATTTGCTGCTGGCACTGAGGCAATTGCCAAGAAGCTTGCGGAGCTCA
GCGGGAAGGGAGTGACCACAATCATTGGAGGAGGTGACTCAGTTGCAGCC
GTAGAGAAGGTTGGTCTGGCTGACAAGATGAGCCATATCTCCACTGGAGG
TGGAGCCAGCTTAGAGCTCCTTGAGGGCAAAACACTCCCTGGTGTGCTTG
CTCTTGATGATGCTTAAACCCAGTTCCTGGACTTTCCTTTTTTAAATGTG
CCATTTCCAGAGTTGTATGTGTGGCTGGTTGTCAGCCCAGAGTGGATAAA
AGTTAAACTTTATCATTAGAGTTGGTTTTGTAGATGCTGTAAGAGTAAAA
ATAAATTCTTTCTCACAGGCATCAATGGTGATGCATTTTTCTGGATTTGA
TCCCATTTTGGAACATTGTGATGGTAAGGCTATAAGTTTCCTGAAGTCAA
GTTCTTGTTCCTTTCTGAAAAAAAAAAAAAAAA
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