CX047074

Overview
NameCX047074
Unique NameCX047074
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length483
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047074 vs. ExPASy Swiss-Prot
Match: PGK_SYNP6 (Phosphoglycerate kinase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=pgk PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 5.938e-25
Identity = 58/71 (81.69%), Postives = 63/71 (88.73%), Query Frame = 2
Query:    2 KFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 214
            +FA GTEAIA+ LA L+ KG TTIIGGGDSVAAVEKVG+A +MSHISTGGGASLELLEGK LPGV ALDDA
Sbjct:  331 QFAVGTEAIARSLAGLTRKGATTIIGGGDSVAAVEKVGVASEMSHISTGGGASLELLEGKVLPGVAALDDA 401          
BLAST of CX047074 vs. ExPASy Swiss-Prot
Match: PGK_SYNP2 (Phosphoglycerate kinase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=pgk PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 5.938e-25
Identity = 58/71 (81.69%), Postives = 62/71 (87.32%), Query Frame = 2
Query:    2 KFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 214
            KFA GTEAIAK LA  +  G  TIIGGGDSVAAVEKVG+ADKMSHISTGGGASLELLEGK LPG++ALDDA
Sbjct:  328 KFAVGTEAIAKTLAGATETGTVTIIGGGDSVAAVEKVGVADKMSHISTGGGASLELLEGKELPGIVALDDA 398          
BLAST of CX047074 vs. ExPASy Swiss-Prot
Match: PGK_SYNE7 (Phosphoglycerate kinase OS=Synechococcus elongatus (strain PCC 7942) GN=pgk PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 5.938e-25
Identity = 58/71 (81.69%), Postives = 63/71 (88.73%), Query Frame = 2
Query:    2 KFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 214
            +FA GTEAIA+ LA L+ KG TTIIGGGDSVAAVEKVG+A +MSHISTGGGASLELLEGK LPGV ALDDA
Sbjct:  331 QFAVGTEAIARSLAGLTRKGATTIIGGGDSVAAVEKVGVASEMSHISTGGGASLELLEGKVLPGVAALDDA 401          
BLAST of CX047074 vs. ExPASy Swiss-Prot
Match: PGK_SYNY3 (Phosphoglycerate kinase OS=Synechocystis sp. (strain PCC 6803) GN=pgk PE=3 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 7.755e-25
Identity = 57/70 (81.43%), Postives = 61/70 (87.14%), Query Frame = 2
Query:    2 KFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 211
            KFA GTEAIA  LAEL+  G  TIIGGGDSVAAVEKVG+A+KMSHISTGGGASLELLEGK LPG+ ALDD
Sbjct:  331 KFAVGTEAIACSLAELTASGTVTIIGGGDSVAAVEKVGVAEKMSHISTGGGASLELLEGKVLPGIAALDD 400          
BLAST of CX047074 vs. ExPASy Swiss-Prot
Match: PGK_SYNSC (Phosphoglycerate kinase OS=Synechococcus sp. (strain CC9605) GN=pgk PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.323e-24
Identity = 58/71 (81.69%), Postives = 61/71 (85.92%), Query Frame = 2
Query:    2 KFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 214
            KFA GT +IA  LA+LSGKG  TIIGGGDSVAAVEK GLA+KMSHISTGGGASLELLEGK LPGV ALD A
Sbjct:  331 KFATGTNSIATTLADLSGKGCCTIIGGGDSVAAVEKAGLAEKMSHISTGGGASLELLEGKVLPGVAALDAA 401          
BLAST of CX047074 vs. ExPASy Swiss-Prot
Match: PGK_SYNR3 (Phosphoglycerate kinase OS=Synechococcus sp. (strain RCC307) GN=pgk PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.323e-24
Identity = 59/71 (83.10%), Postives = 61/71 (85.92%), Query Frame = 2
Query:    2 KFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 214
            KFAAGT AIA  LAELS KG  TIIGGGDSVAAVEK GLA +MSHISTGGGASLELLEGK LPGV ALD+A
Sbjct:  331 KFAAGTNAIATTLAELSAKGCCTIIGGGDSVAAVEKAGLAAQMSHISTGGGASLELLEGKVLPGVAALDEA 401          
BLAST of CX047074 vs. ExPASy Swiss-Prot
Match: PGK_PROMT (Phosphoglycerate kinase OS=Prochlorococcus marinus (strain NATL2A) GN=pgk PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.728e-24
Identity = 59/71 (83.10%), Postives = 60/71 (84.51%), Query Frame = 2
Query:    2 KFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 214
            KFA GT AIA  LAELS +G  TIIGGGDSVAAVEK GLA KMSHISTGGGASLELLEGK LPGV ALDDA
Sbjct:  331 KFANGTNAIANTLAELSAQGCCTIIGGGDSVAAVEKAGLAKKMSHISTGGGASLELLEGKVLPGVSALDDA 401          
BLAST of CX047074 vs. ExPASy Swiss-Prot
Match: PGK_SYNJB (Phosphoglycerate kinase OS=Synechococcus sp. GN=pgk PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.256e-24
Identity = 56/71 (78.87%), Postives = 63/71 (88.73%), Query Frame = 2
Query:    2 KFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 214
            +FA GTEAIA+ LA+L+  G TTIIGGGDSVAAVEKVGLADKM+HISTGGGASLELLEGK LPG+ AL +A
Sbjct:  342 RFALGTEAIARTLADLTQAGATTIIGGGDSVAAVEKVGLADKMTHISTGGGASLELLEGKVLPGIAALTEA 412          
BLAST of CX047074 vs. ExPASy Swiss-Prot
Match: PGK_SYNJA (Phosphoglycerate kinase OS=Synechococcus sp. (strain JA-3-3Ab) GN=pgk PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.947e-24
Identity = 56/71 (78.87%), Postives = 63/71 (88.73%), Query Frame = 2
Query:    2 KFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 214
            +FAAGTEAIA+ LA+L+  G  TIIGGGDSVAAVEKVGLADKM+HISTGGGASLELLEGK LPG+ AL +A
Sbjct:  342 RFAAGTEAIARTLADLTQAGAITIIGGGDSVAAVEKVGLADKMTHISTGGGASLELLEGKELPGIAALSEA 412          
BLAST of CX047074 vs. ExPASy Swiss-Prot
Match: PGK_PROMA (Phosphoglycerate kinase OS=Prochlorococcus marinus GN=pgk PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 6.565e-24
Identity = 57/70 (81.43%), Postives = 59/70 (84.29%), Query Frame = 2
Query:    2 KFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 211
            KFA GT +I+  LAELS KG  TIIGGGDSVAAVEK GLA KMSHISTGGGASLELLEGK LPGV ALDD
Sbjct:  331 KFANGTNSISTTLAELSAKGCCTIIGGGDSVAAVEKAGLASKMSHISTGGGASLELLEGKVLPGVAALDD 400          
The following BLAST results are available for this feature:
BLAST of CX047074 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_SYNP65.938e-2581.69Phosphoglycerate kinase OS=Synechococcus sp. (stra... [more]
PGK_SYNP25.938e-2581.69Phosphoglycerate kinase OS=Synechococcus sp. (stra... [more]
PGK_SYNE75.938e-2581.69Phosphoglycerate kinase OS=Synechococcus elongatus... [more]
PGK_SYNY37.755e-2581.43Phosphoglycerate kinase OS=Synechocystis sp. (stra... [more]
PGK_SYNSC1.323e-2481.69Phosphoglycerate kinase OS=Synechococcus sp. (stra... [more]
PGK_SYNR31.323e-2483.10Phosphoglycerate kinase OS=Synechococcus sp. (stra... [more]
PGK_PROMT1.728e-2483.10Phosphoglycerate kinase OS=Prochlorococcus marinus... [more]
PGK_SYNJB2.256e-2478.87Phosphoglycerate kinase OS=Synechococcus sp. GN=pg... [more]
PGK_SYNJA2.947e-2478.87Phosphoglycerate kinase OS=Synechococcus sp. (stra... [more]
PGK_PROMA6.565e-2481.43Phosphoglycerate kinase OS=Prochlorococcus marinus... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS09_12A03_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12A03-A5-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047074 ID=CX047074; Name=CX047074; organism=Citrus sinensis; type=EST; length=483bp
TAAATTTGCTGCTGGCACTGAGGCAATTGCCAAGAAGCTTGCGGAGCTCA
GCGGGAAGGGAGTGACCACAATCATTGGAGGAGGTGACTCAGTTGCAGCC
GTAGAGAAGGTTGGTCTGGCTGACAAGATGAGCCATATCTCCACTGGAGG
TGGAGCCAGCTTAGAGCTCCTTGAGGGCAAAACACTCCCTGGTGTGCTTG
CTCTTGATGATGCTTAAACCCAGTTCCTGGACTTTCCTTTTTTAAATGTG
CCATTTCCAGAGTTGTATGTGTGGCTGGTTGTCAGCCCAGAGTGGATAAA
AGTTAAACTTTATCATTAGAGTTGGTTTTGTAGATGCTGTAAGAGTAAAA
ATAAATTCTTTCTCACAGGCATCAATGGTGATGCATTTTTCTGGATTTGA
TCCCATTTTGGAACATTGTGATGGTAAGGCTATAAGTTTCCTGAAGTCAA
GTTCTTGTTCCTTTCTGAAAAAAAAAAAAAAAA
back to top