CX047074

Overview
NameCX047074
Unique NameCX047074
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length483
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047074 vs. ExPASy Swiss-Prot
Match: PGK_CHLAA (Phosphoglycerate kinase OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=pgk PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 2.758e-22
Identity = 51/70 (72.86%), Postives = 58/70 (82.86%), Query Frame = 2
Query:    5 FAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 214
            FA GT AIA+ +AE +  G  TI+GGGDSVAAVE+ GLADKMSH+STGGGASLELLEG+ LPGV AL DA
Sbjct:  330 FAVGTRAIAQAMAEAAANGAITIVGGGDSVAAVEQAGLADKMSHVSTGGGASLELLEGRVLPGVAALQDA 399          
BLAST of CX047074 vs. ExPASy Swiss-Prot
Match: PGK_PROM0 (Phosphoglycerate kinase OS=Prochlorococcus marinus (strain MIT 9301) GN=pgk PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 6.145e-22
Identity = 57/72 (79.17%), Postives = 60/72 (83.33%), Query Frame = 2
Query:    2 KFAAGTEAIAKKLAELSG-KGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 214
            KFA GT AIA  LA+LS    V TIIGGGDSVAAVEK GLA+KMSHISTGGGASLELLEGK LPGV AL+DA
Sbjct:  331 KFADGTNAIATTLADLSAFSEVCTIIGGGDSVAAVEKAGLAEKMSHISTGGGASLELLEGKILPGVAALNDA 402          
BLAST of CX047074 vs. ExPASy Swiss-Prot
Match: PGK_PROM5 (Phosphoglycerate kinase OS=Prochlorococcus marinus (strain MIT 9515) GN=pgk PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 6.794e-21
Identity = 54/71 (76.06%), Postives = 59/71 (83.10%), Query Frame = 2
Query:    2 KFAAGTEAIAKKLAELSG-KGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 211
            KFA GT +IA  LA+LS    V TIIGGGDSVAAVEK GLA+KMSHISTGGGASLELLEGK LPGV AL++
Sbjct:  331 KFAEGTNSIATTLADLSSFSEVCTIIGGGDSVAAVEKAGLAEKMSHISTGGGASLELLEGKNLPGVAALNE 401          
BLAST of CX047074 vs. ExPASy Swiss-Prot
Match: PGK_TRIEI (Phosphoglycerate kinase OS=Trichodesmium erythraeum (strain IMS101) GN=pgk PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 8.873e-21
Identity = 52/70 (74.29%), Postives = 60/70 (85.71%), Query Frame = 2
Query:    2 KFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 211
            KFA GTEAIA+ LA+   +   TIIGGGDSVAAVE++GL +KMSHISTGGGASLELLEGK LPG++ALDD
Sbjct:  330 KFAKGTEAIAQTLADK--QDAITIIGGGDSVAAVEQLGLGEKMSHISTGGGASLELLEGKKLPGIVALDD 397          
BLAST of CX047074 vs. ExPASy Swiss-Prot
Match: PGK_PELPB (Phosphoglycerate kinase OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=pgk PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.159e-20
Identity = 48/69 (69.57%), Postives = 58/69 (84.06%), Query Frame = 2
Query:    5 FAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 211
            FAAGT A+A+ +AE + +G TTIIGGGDS AAV K GLA++M+HISTGGGASLE LEGK LPG+ AL+D
Sbjct:  329 FAAGTMAVAQAMAEATAEGATTIIGGGDSAAAVAKAGLANEMTHISTGGGASLEFLEGKELPGIAALND 397          
BLAST of CX047074 vs. ExPASy Swiss-Prot
Match: PGK_PELLD (Phosphoglycerate kinase OS=Pelodictyon luteolum (strain DSM 273) GN=pgk PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.977e-20
Identity = 49/68 (72.06%), Postives = 55/68 (80.88%), Query Frame = 2
Query:    5 FAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALD 208
            FA GT A+A+ LA  + KG TTIIGGGDS AAV K GLADKM+HISTGGGASLE LEGK LPG+ AL+
Sbjct:  329 FAGGTIAVAEALAAATAKGATTIIGGGDSAAAVAKAGLADKMTHISTGGGASLEFLEGKELPGIAALN 396          
BLAST of CX047074 vs. ExPASy Swiss-Prot
Match: PGK_HERA2 (Phosphoglycerate kinase OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=pgk PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 4.404e-20
Identity = 50/69 (72.46%), Postives = 59/69 (85.51%), Query Frame = 2
Query:    5 FAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 211
            FAAGT A+A+ LA+ S     TIIGGGDSVAA+E++GLA+KMSHISTGGGASLELLEGK LPG+ AL+D
Sbjct:  328 FAAGTRAVAQALADSSA---ITIIGGGDSVAAIEQMGLAEKMSHISTGGGASLELLEGKVLPGIAALND 393          
BLAST of CX047074 vs. ExPASy Swiss-Prot
Match: PGK_CHLL2 (Phosphoglycerate kinase OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=pgk PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 7.512e-20
Identity = 47/70 (67.14%), Postives = 57/70 (81.43%), Query Frame = 2
Query:    2 KFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 211
            +FA GT AIA+ +A+ +  G TTIIGGGDS AAV K GLAD+++HISTGGGASLE LEGK LPG+ AL+D
Sbjct:  328 RFAEGTIAIAEAMADATAAGATTIIGGGDSAAAVAKAGLADQITHISTGGGASLEFLEGKELPGIAALND 397          
BLAST of CX047074 vs. ExPASy Swiss-Prot
Match: PGK_PROVI (Phosphoglycerate kinase OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=pgk PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 9.811e-20
Identity = 48/69 (69.57%), Postives = 55/69 (79.71%), Query Frame = 2
Query:    5 FAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 211
            FA GT A+A+ +A  + KG TTIIGGGDS AAV K GLA KM+HISTGGGASLE LEGK LPG+ AL+D
Sbjct:  329 FANGTFAVAEAMALATAKGATTIIGGGDSAAAVAKAGLASKMTHISTGGGASLEFLEGKELPGIAALND 397          
BLAST of CX047074 vs. ExPASy Swiss-Prot
Match: PGKH_CHLRE (Phosphoglycerate kinase, chloroplastic OS=Chlamydomonas reinhardtii PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.673e-19
Identity = 49/65 (75.38%), Postives = 55/65 (84.62%), Query Frame = 2
Query:   17 TEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 211
            T +IA  LA L+ KG  TIIGGGDSVAAVE+ G+A+KMSHISTGGGASLELLEGK LPGV ALD+
Sbjct:  396 TVSIANTLAGLTPKGCITIIGGGDSVAAVEQAGVAEKMSHISTGGGASLELLEGKVLPGVAALDE 460          
The following BLAST results are available for this feature:
BLAST of CX047074 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_CHLAA2.758e-2272.86Phosphoglycerate kinase OS=Chloroflexus aurantiacu... [more]
PGK_PROM06.145e-2279.17Phosphoglycerate kinase OS=Prochlorococcus marinus... [more]
PGK_PROM56.794e-2176.06Phosphoglycerate kinase OS=Prochlorococcus marinus... [more]
PGK_TRIEI8.873e-2174.29Phosphoglycerate kinase OS=Trichodesmium erythraeu... [more]
PGK_PELPB1.159e-2069.57Phosphoglycerate kinase OS=Pelodictyon phaeoclathr... [more]
PGK_PELLD1.977e-2072.06Phosphoglycerate kinase OS=Pelodictyon luteolum (s... [more]
PGK_HERA24.404e-2072.46Phosphoglycerate kinase OS=Herpetosiphon aurantiac... [more]
PGK_CHLL27.512e-2067.14Phosphoglycerate kinase OS=Chlorobium limicola (st... [more]
PGK_PROVI9.811e-2069.57Phosphoglycerate kinase OS=Prosthecochloris vibrio... [more]
PGKH_CHLRE1.673e-1975.38Phosphoglycerate kinase, chloroplastic OS=Chlamydo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_12A03_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12A03-A5-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047074 ID=CX047074; Name=CX047074; organism=Citrus sinensis; type=EST; length=483bp
TAAATTTGCTGCTGGCACTGAGGCAATTGCCAAGAAGCTTGCGGAGCTCA
GCGGGAAGGGAGTGACCACAATCATTGGAGGAGGTGACTCAGTTGCAGCC
GTAGAGAAGGTTGGTCTGGCTGACAAGATGAGCCATATCTCCACTGGAGG
TGGAGCCAGCTTAGAGCTCCTTGAGGGCAAAACACTCCCTGGTGTGCTTG
CTCTTGATGATGCTTAAACCCAGTTCCTGGACTTTCCTTTTTTAAATGTG
CCATTTCCAGAGTTGTATGTGTGGCTGGTTGTCAGCCCAGAGTGGATAAA
AGTTAAACTTTATCATTAGAGTTGGTTTTGTAGATGCTGTAAGAGTAAAA
ATAAATTCTTTCTCACAGGCATCAATGGTGATGCATTTTTCTGGATTTGA
TCCCATTTTGGAACATTGTGATGGTAAGGCTATAAGTTTCCTGAAGTCAA
GTTCTTGTTCCTTTCTGAAAAAAAAAAAAAAAA
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