CX047074

Overview
NameCX047074
Unique NameCX047074
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length483
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047074 vs. ExPASy Swiss-Prot
Match: PGK_DINSH (Phosphoglycerate kinase OS=Dinoroseobacter shibae (strain DFL 12) GN=pgk PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.765e-12
Identity = 37/71 (52.11%), Postives = 49/71 (69.01%), Query Frame = 2
Query:    5 FAAGTEAIAKKLAELSGKG-VTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 214
            F   T A A+  A+ +  G + T+ GGGD+VAA+ K G+AD  ++IST GGA LE +EGKTLPGV AL+ A
Sbjct:  323 FDMATNAAARAAADATKAGTLITVAGGGDTVAALNKAGVADDFTYISTAGGAFLEWMEGKTLPGVAALEAA 393          
BLAST of CX047074 vs. ExPASy Swiss-Prot
Match: PGK_DESVM (Phosphoglycerate kinase OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=pgk PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.765e-12
Identity = 34/70 (48.57%), Postives = 50/70 (71.43%), Query Frame = 2
Query:    2 KFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 211
            +F  GT+A+   +A+       ++ GGGD+VAA+EK G+ D++S++STGGGA LE LEGKTLP V  L++
Sbjct:  322 QFGQGTKALCMAVAD---SPAFSLAGGGDTVAAIEKYGVVDRISYMSTGGGAFLEFLEGKTLPAVAVLEE 388          
BLAST of CX047074 vs. ExPASy Swiss-Prot
Match: PGK_STRP7 (Phosphoglycerate kinase OS=Streptococcus pneumoniae (strain 70585) GN=pgk PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 7.529e-12
Identity = 35/51 (68.63%), Postives = 40/51 (78.43%), Query Frame = 2
Query:   59 GVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 211
            GV +IIGGGDS AA   +G ADK S ISTGGGAS+ELLEGK LPG+ AL +
Sbjct:  347 GVKSIIGGGDSAAAAINLGRADKFSWISTGGGASMELLEGKVLPGLAALTE 397          
BLAST of CX047074 vs. ExPASy Swiss-Prot
Match: PGK_SHEON (Phosphoglycerate kinase OS=Shewanella oneidensis GN=pgk PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 7.529e-12
Identity = 37/68 (54.41%), Postives = 48/68 (70.59%), Query Frame = 2
Query:    2 KFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLAL 205
            +F  GT+ IA  +A+       +I GGGD++AAV+K G+ADK+S+ISTGGGA LE LEGK LP V  L
Sbjct:  322 QFGEGTKRIAHAIADSKA---FSIAGGGDTLAAVDKYGIADKVSYISTGGGAFLEFLEGKELPAVAML 386          
BLAST of CX047074 vs. ExPASy Swiss-Prot
Match: PGK_RHOBA (Phosphoglycerate kinase OS=Rhodopirellula baltica GN=pgk PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 7.529e-12
Identity = 37/67 (55.22%), Postives = 51/67 (76.12%), Query Frame = 2
Query:   14 GTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 214
            GT+A+A+ +A+  G  V+ IIGGGDS AAV+++G AD +SH+STGGGASL +LEG+    V  LD+A
Sbjct:  334 GTKAVAQAIAD--GDAVS-IIGGGDSAAAVDQLGFADDVSHVSTGGGASLAMLEGQAFAAVDLLDEA 397          
BLAST of CX047074 vs. ExPASy Swiss-Prot
Match: PGK_PSESM (Phosphoglycerate kinase OS=Pseudomonas syringae pv. tomato GN=pgk PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 7.529e-12
Identity = 35/69 (50.72%), Postives = 50/69 (72.46%), Query Frame = 2
Query:    2 KFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALD 208
            +F  GT+ +AK +AE       +I GGGD++AA++K G+AD++S+ISTGGGA LE +EGK LP V  L+
Sbjct:  317 QFGEGTKTLAKAIAESKA---FSIAGGGDTLAAIDKYGVADQISYISTGGGAFLEFVEGKVLPAVEMLE 382          
BLAST of CX047074 vs. ExPASy Swiss-Prot
Match: PGK_PHOLU (Phosphoglycerate kinase OS=Photorhabdus luminescens GN=pgk PE=3 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 7.529e-12
Identity = 34/69 (49.28%), Postives = 50/69 (72.46%), Query Frame = 2
Query:    5 FAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 211
            F  GTE +A+ +A+       +I GGGD++AA++  G+ADK+S+ISTGGGA LE +EGK LP V+ L++
Sbjct:  318 FRQGTEIVARAIAD---SDAFSIAGGGDTLAAIDLFGIADKISYISTGGGAFLEFVEGKKLPAVVMLEE 383          
BLAST of CX047074 vs. ExPASy Swiss-Prot
Match: PGK_PHOLL (Phosphoglycerate kinase OS=Photorhabdus luminescens subsp. laumondii GN=pgk PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 7.529e-12
Identity = 34/69 (49.28%), Postives = 50/69 (72.46%), Query Frame = 2
Query:    5 FAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 211
            F  GTE +A+ +A+       +I GGGD++AA++  G+ADK+S+ISTGGGA LE +EGK LP V+ L++
Sbjct:  318 FRQGTEIVARAIAD---SDAFSIAGGGDTLAAIDLFGIADKISYISTGGGAFLEFVEGKKLPAVVMLEE 383          
BLAST of CX047074 vs. ExPASy Swiss-Prot
Match: PGK_NEIMF (Phosphoglycerate kinase OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=pgk PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 7.529e-12
Identity = 35/69 (50.72%), Postives = 50/69 (72.46%), Query Frame = 2
Query:    2 KFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALD 208
            +FA GT+A+A+ +A+       +I GGGD++AA+ K G+ D++ +ISTGGGA LE LEGK LP V AL+
Sbjct:  323 QFAGGTKALAEAIAQSKA---FSIAGGGDTLAAIAKFGVTDQIGYISTGGGAFLEFLEGKELPAVAALE 388          
BLAST of CX047074 vs. ExPASy Swiss-Prot
Match: PGK_JANMA (Phosphoglycerate kinase OS=Janthinobacterium sp. (strain Marseille) GN=pgk PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 7.529e-12
Identity = 36/70 (51.43%), Postives = 48/70 (68.57%), Query Frame = 2
Query:    2 KFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 211
            +FA GT+ +A  +AE  G  V    GGGD++AA+ K  + DK+ +ISTGGGA LE LEGKTLP V  L++
Sbjct:  327 QFANGTKTLAYAIAESKGFSVA---GGGDTLAAIAKYDIGDKIDYISTGGGAFLEFLEGKTLPAVAILEE 393          
The following BLAST results are available for this feature:
BLAST of CX047074 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_DINSH5.765e-1252.11Phosphoglycerate kinase OS=Dinoroseobacter shibae ... [more]
PGK_DESVM5.765e-1248.57Phosphoglycerate kinase OS=Desulfovibrio vulgaris ... [more]
PGK_STRP77.529e-1268.63Phosphoglycerate kinase OS=Streptococcus pneumonia... [more]
PGK_SHEON7.529e-1254.41Phosphoglycerate kinase OS=Shewanella oneidensis G... [more]
PGK_RHOBA7.529e-1255.22Phosphoglycerate kinase OS=Rhodopirellula baltica ... [more]
PGK_PSESM7.529e-1250.72Phosphoglycerate kinase OS=Pseudomonas syringae pv... [more]
PGK_PHOLU7.529e-1249.28Phosphoglycerate kinase OS=Photorhabdus luminescen... [more]
PGK_PHOLL7.529e-1249.28Phosphoglycerate kinase OS=Photorhabdus luminescen... [more]
PGK_NEIMF7.529e-1250.72Phosphoglycerate kinase OS=Neisseria meningitidis ... [more]
PGK_JANMA7.529e-1251.43Phosphoglycerate kinase OS=Janthinobacterium sp. (... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS09_12A03_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12A03-A5-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047074 ID=CX047074; Name=CX047074; organism=Citrus sinensis; type=EST; length=483bp
TAAATTTGCTGCTGGCACTGAGGCAATTGCCAAGAAGCTTGCGGAGCTCA
GCGGGAAGGGAGTGACCACAATCATTGGAGGAGGTGACTCAGTTGCAGCC
GTAGAGAAGGTTGGTCTGGCTGACAAGATGAGCCATATCTCCACTGGAGG
TGGAGCCAGCTTAGAGCTCCTTGAGGGCAAAACACTCCCTGGTGTGCTTG
CTCTTGATGATGCTTAAACCCAGTTCCTGGACTTTCCTTTTTTAAATGTG
CCATTTCCAGAGTTGTATGTGTGGCTGGTTGTCAGCCCAGAGTGGATAAA
AGTTAAACTTTATCATTAGAGTTGGTTTTGTAGATGCTGTAAGAGTAAAA
ATAAATTCTTTCTCACAGGCATCAATGGTGATGCATTTTTCTGGATTTGA
TCCCATTTTGGAACATTGTGATGGTAAGGCTATAAGTTTCCTGAAGTCAA
GTTCTTGTTCCTTTCTGAAAAAAAAAAAAAAAA
back to top