CX047074

Overview
NameCX047074
Unique NameCX047074
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length483
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047074 vs. ExPASy Swiss-Prot
Match: PGK_CHLTE (Phosphoglycerate kinase OS=Chlorobium tepidum GN=pgk PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.854e-19
Identity = 44/70 (62.86%), Postives = 57/70 (81.43%), Query Frame = 2
Query:    2 KFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 211
            +FA GT A+A+ LA+ + +G  TIIGGGDS AA+ K GL+DK++H+STGGGASLE LEGK LPG+ AL+D
Sbjct:  328 QFARGTFAVAQALADATAEGAITIIGGGDSAAAIAKAGLSDKVTHVSTGGGASLEFLEGKELPGIAALND 397          
BLAST of CX047074 vs. ExPASy Swiss-Prot
Match: PGK_BACSU (Phosphoglycerate kinase OS=Bacillus subtilis GN=pgk PE=1 SV=3)

HSP 1 Score: 94.3597 bits (233), Expect = 2.854e-19
Identity = 49/69 (71.01%), Postives = 56/69 (81.16%), Query Frame = 2
Query:    5 FAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 211
            FA GT+A+A+ LAE   K   ++IGGGDS AAVEK GLADKMSHISTGGGASLE +EGK LPGV AL+D
Sbjct:  327 FAQGTKAVAEALAE--AKDTYSVIGGGDSAAAVEKFGLADKMSHISTGGGASLEFMEGKELPGVAALND 393          
BLAST of CX047074 vs. ExPASy Swiss-Prot
Match: PGK_ROSS1 (Phosphoglycerate kinase OS=Roseiflexus sp. (strain RS-1) GN=pgk PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 6.359e-19
Identity = 49/70 (70.00%), Postives = 57/70 (81.43%), Query Frame = 2
Query:    5 FAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 214
            FA GT AIA+ +A   G    TI+GGGDSVAAVE++GLADK+ HISTGGGASLELLEG+ LPGV AL+DA
Sbjct:  329 FAEGTRAIAQAMANCPGM---TIVGGGDSVAAVEQMGLADKIRHISTGGGASLELLEGRILPGVAALNDA 395          
BLAST of CX047074 vs. ExPASy Swiss-Prot
Match: PGK_ROSCS (Phosphoglycerate kinase OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=pgk PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 6.359e-19
Identity = 49/70 (70.00%), Postives = 57/70 (81.43%), Query Frame = 2
Query:    5 FAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 214
            FA GT AIA+ +A   G    TIIGGGDSVAA+E++GLADK+ HISTGGGASLELLEG+ LPGV AL+DA
Sbjct:  329 FAEGTRAIAQAMANCPGM---TIIGGGDSVAAIEQMGLADKIRHISTGGGASLELLEGRILPGVAALNDA 395          
BLAST of CX047074 vs. ExPASy Swiss-Prot
Match: PGK_CHLP8 (Phosphoglycerate kinase OS=Chlorobaculum parvum (strain NCIB 8327) GN=pgk PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 6.359e-19
Identity = 44/70 (62.86%), Postives = 56/70 (80.00%), Query Frame = 2
Query:    2 KFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 211
            +FA GT A+A+ LA+ +  G  TIIGGGDS AA+ K GL+DK++H+STGGGASLE LEGK LPG+ AL+D
Sbjct:  328 QFAKGTFAVAQALADATDAGAITIIGGGDSAAAIAKAGLSDKVTHVSTGGGASLEFLEGKELPGIAALND 397          
BLAST of CX047074 vs. ExPASy Swiss-Prot
Match: PGK_BACP2 (Phosphoglycerate kinase OS=Bacillus pumilus (strain SAFR-032) GN=pgk PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 6.359e-19
Identity = 49/69 (71.01%), Postives = 56/69 (81.16%), Query Frame = 2
Query:    5 FAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 211
            FA GT+AIA+ LAE   K   ++IGGGDS AAVEK GLAD+MSHISTGGGASLE +EGK LPGV AL+D
Sbjct:  327 FAKGTKAIAEALAE--AKDTYSVIGGGDSAAAVEKFGLADQMSHISTGGGASLEFMEGKELPGVTALND 393          
BLAST of CX047074 vs. ExPASy Swiss-Prot
Match: PGK_TREDE (Phosphoglycerate kinase OS=Treponema denticola GN=pgk PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.085e-18
Identity = 45/68 (66.18%), Postives = 52/68 (76.47%), Query Frame = 2
Query:    5 FAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALD 208
            F+ GTE  A+ +A  + KG  TI+GGGDSVAAV K  LADKMSH+STGGGASLE LEGK LPG+  LD
Sbjct:  350 FSKGTEETARLVAAATEKGALTIVGGGDSVAAVNKFNLADKMSHVSTGGGASLEFLEGKVLPGIACLD 417          
BLAST of CX047074 vs. ExPASy Swiss-Prot
Match: PGK_FERNB (Phosphoglycerate kinase OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=pgk PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.417e-18
Identity = 43/69 (62.32%), Postives = 55/69 (79.71%), Query Frame = 2
Query:    5 FAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 211
            FA GT+A+A+ +A L+ KGVTT++GGGDS AAV + GL  K SH+STGGGASLE LEGK LPG+ ++ D
Sbjct:  328 FANGTKAVAEFIASLTDKGVTTVVGGGDSAAAVSQFGLEKKFSHVSTGGGASLEFLEGKELPGIASIAD 396          
BLAST of CX047074 vs. ExPASy Swiss-Prot
Match: PGK_CHLPD (Phosphoglycerate kinase OS=Chlorobium phaeobacteroides (strain DSM 266) GN=pgk PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.417e-18
Identity = 45/69 (65.22%), Postives = 53/69 (76.81%), Query Frame = 2
Query:    5 FAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 211
            FA GT AIAK LAE +  G  TI+GGGDS AA+ K  L+D ++HISTGGGASLE LEGK LPG+ AL+D
Sbjct:  329 FAEGTFAIAKALAEATSSGAITIVGGGDSAAAIAKAALSDSITHISTGGGASLEFLEGKALPGIEALND 397          
BLAST of CX047074 vs. ExPASy Swiss-Prot
Match: PGK_CHLCH (Phosphoglycerate kinase OS=Chlorobium chlorochromatii (strain CaD3) GN=pgk PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.417e-18
Identity = 43/69 (62.32%), Postives = 56/69 (81.16%), Query Frame = 2
Query:    5 FAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 211
            FA GT A+A+ LA+ + +G TTI+GGGDS AA+ K GLA +++HISTGGGASLE LEGK LPG+ AL++
Sbjct:  329 FATGTIAVAQALADATAQGATTIVGGGDSAAAIAKAGLASEITHISTGGGASLEFLEGKELPGIAALNN 397          
The following BLAST results are available for this feature:
BLAST of CX047074 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_CHLTE2.854e-1962.86Phosphoglycerate kinase OS=Chlorobium tepidum GN=p... [more]
PGK_BACSU2.854e-1971.01Phosphoglycerate kinase OS=Bacillus subtilis GN=pg... [more]
PGK_ROSS16.359e-1970.00Phosphoglycerate kinase OS=Roseiflexus sp. (strain... [more]
PGK_ROSCS6.359e-1970.00Phosphoglycerate kinase OS=Roseiflexus castenholzi... [more]
PGK_CHLP86.359e-1962.86Phosphoglycerate kinase OS=Chlorobaculum parvum (s... [more]
PGK_BACP26.359e-1971.01Phosphoglycerate kinase OS=Bacillus pumilus (strai... [more]
PGK_TREDE1.085e-1866.18Phosphoglycerate kinase OS=Treponema denticola GN=... [more]
PGK_FERNB1.417e-1862.32Phosphoglycerate kinase OS=Fervidobacterium nodosu... [more]
PGK_CHLPD1.417e-1865.22Phosphoglycerate kinase OS=Chlorobium phaeobactero... [more]
PGK_CHLCH1.417e-1862.32Phosphoglycerate kinase OS=Chlorobium chlorochroma... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_12A03_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12A03-A5-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047074 ID=CX047074; Name=CX047074; organism=Citrus sinensis; type=EST; length=483bp
TAAATTTGCTGCTGGCACTGAGGCAATTGCCAAGAAGCTTGCGGAGCTCA
GCGGGAAGGGAGTGACCACAATCATTGGAGGAGGTGACTCAGTTGCAGCC
GTAGAGAAGGTTGGTCTGGCTGACAAGATGAGCCATATCTCCACTGGAGG
TGGAGCCAGCTTAGAGCTCCTTGAGGGCAAAACACTCCCTGGTGTGCTTG
CTCTTGATGATGCTTAAACCCAGTTCCTGGACTTTCCTTTTTTAAATGTG
CCATTTCCAGAGTTGTATGTGTGGCTGGTTGTCAGCCCAGAGTGGATAAA
AGTTAAACTTTATCATTAGAGTTGGTTTTGTAGATGCTGTAAGAGTAAAA
ATAAATTCTTTCTCACAGGCATCAATGGTGATGCATTTTTCTGGATTTGA
TCCCATTTTGGAACATTGTGATGGTAAGGCTATAAGTTTCCTGAAGTCAA
GTTCTTGTTCCTTTCTGAAAAAAAAAAAAAAAA
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