CX047053

Overview
NameCX047053
Unique NameCX047053
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length864
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047053 vs. ExPASy Swiss-Prot
Match: NOD_DROME (Kinesin-like protein Nod OS=Drosophila melanogaster GN=nod PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.185e-14
Identity = 53/174 (30.46%), Postives = 86/174 (49.43%), Query Frame = -1
Query:  253 TIVDVCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIFGVNEATEQQVQGVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALAKKEDHIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAA-----RVNACEIGVPSRQLTLK 759
            T + + S +++  +L    ++R V  T MN  SSRSH + T+ +      +       +N++DLAGSE + R+G  G   +E   IN  L S++ V+ ++A     IPYR+S LT +LQ  L   S       ISP    + E+L +LRF       R+N  ++    + L  +
Sbjct:  170 TCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSKTHHSR------MNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGHTVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRFGTSAKKLRLNPMQVARQKQSLAAR 337          
BLAST of CX047053 vs. ExPASy Swiss-Prot
Match: KIF2C_XENLA (Kinesin-like protein KIF2C OS=Xenopus laevis GN=kif2c PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 1.155e-13
Identity = 55/171 (32.16%), Postives = 88/171 (51.46%), Query Frame = -1
Query:  298 IKHDANGNTHVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIFGVNEATEQQVQGVLNLIDLAGSERLSRSGATGDRLKETQA--INKSLSSLSDVIFALAKKEDHIPYRNSKLTYLLQPC-LGRDSKTLMFVNISPDSPSVGESLCSLRFAARV 801
            +  DA     V  L    V S  ++  ++   +  R+ G+T  N  SSRSH    + +         ++ G  +L+DLAG+ER     A+ DR+   +   IN+SL +L + I AL + + H P+R SKLT +L+   +G +S+T M   +SP   S   +L +LR+A RV
Sbjct:  425 VLEDAKQEVQVVGLLEKQVISADDVFKMIEIGSACRTSGQTFANTSSSRSHACLQIIL-----RRGSKLHGKFSLVDLAGNER-GVDTASADRITRMEGAEINRSLLALKECIRALGQNKSHTPFRESKLTQILRDSFIGENSRTCMIAMLSPGFNSCEYTLNTLRYADRV 589          
BLAST of CX047053 vs. ExPASy Swiss-Prot
Match: YOG1_SCHPO (Kinesin-like motor protein C15D4.01c OS=Schizosaccharomyces pombe GN=SPBC15D4.01c PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.668e-12
Identity = 59/181 (32.60%), Postives = 93/181 (51.38%), Query Frame = -1
Query:  274 KHDANGNTHVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIFGVNEATEQQVQGVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALAKKEDH----IPYRNSKLTYLL--QPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAARVNACEIGVP 798
            K   +    ++ +  V V + +E   L+++  Q R    T+ N  SSRSH + ++ +F V   + +     ++L+DLAGSER   +  +G  L+E  +IN+SL +L   + AL +K +     IP+R SKLT LL     L   +   M VNI P   S  E+   +R++A  NA EI  P
Sbjct:  218 KSSTSDKKSIAGIQKVFVSNTTEAYKLIQKVLQLRKSTSTKSNSVSSRSHLIMSIELFKVCTKSNKFESCQIDLVDLAGSERTRSAETSGLLLREGASINRSLLTLGQCLEALRRKHEGKQHIIPFRQSKLTELLFHSGHLSGLAGINMLVNIDPFG-SFDENAQVMRYSA--NAREILPP 395          
The following BLAST results are available for this feature:
BLAST of CX047053 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 193
Match NameE-valueIdentityDescription
NOD_DROME5.185e-1430.46Kinesin-like protein Nod OS=Drosophila melanogaste... [more]
KIF2C_XENLA1.155e-1332.16Kinesin-like protein KIF2C OS=Xenopus laevis GN=ki... [more]
YOG1_SCHPO1.668e-1232.60Kinesin-like motor protein C15D4.01c OS=Schizosacc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_11H03_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-11H03-P6-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047053 ID=CX047053; Name=CX047053; organism=Citrus sinensis; type=EST; length=864bp
TTTTTTTTACAGAAATTGCTTCCGCGGTTCTACCTTCAAATTGTATTCAT
CAACTGATGAACTTTGTCATACAACAAACAATAGTCACCTTTATAAGCCA
ATAAATTAACTATCATGCAATGAAAAGCAAAATTAAGATCCTATAATCTC
ACCATGACAACCCACTCCAGTGCATGTGGGACACAGTCATTATGAACATG
ACAAAGTAAACACGTCAGTATTTCAACCATAACTCAACCGAGAATCAGCA
GCCTTCAAAGTCAATTGGCGACTGGGAACCCCAATTTCGCAGGCATTGAC
TCTCGCAGCAAACCGTAGAGAGCAAAGGGACTCACCAACGGACGGAGAAT
CAGGCGAGATGTTAACAAACATTAAAGTTTTAGAATCTCTCCCAAGACAC
GGCTGAAGAAGATATGTCAGCTTCGAGTTCCTATATGGAATATGATCCTC
CTTCTTTGCCAAGGCAAATATAACATCACTCAATGATGACAGGCTTTTAT
TTATGGCCTGAGTTTCTTTCAAACGGTCACCAGTCGCCCCACTTCTTGAT
AATCGCTCACTTCCAGCTAGATCAATGAGGTTTAAGACACCCTGTACTTG
TTGTTCAGTTGCTTCATTTACTCCAAATATTCGTAACGTGAAGACAAAAT
GGCTTCTTGATGAATACTCATTCATTTGAGTCTTGCCCACAGACCTGCTC
TGTGCAGCCTGCCTTAAAAGCGATGAAATCTCTGATATGCTACAGACATC
AACAATCGTAAGGTCGCTGACATGAGTGTTTCCATTTGCATCATGTTTAA
TTGCATACTGCTTTCCAGGAACACCATTCTCCGTACGTGTCAAATCTGAA
CCACCAGCTCGACT
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