CX047053

Overview
NameCX047053
Unique NameCX047053
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length864
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047053 vs. ExPASy Swiss-Prot
Match: KINH_HUMAN (Kinesin-1 heavy chain OS=Homo sapiens GN=KIF5B PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.832e-28
Identity = 69/168 (41.07%), Postives = 103/168 (61.31%), Query Frame = -1
Query:  301 AIKHDANGNTHVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIFGVNEATEQQVQGVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALAKKEDHIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAAR 804
            ++  D N   +V   T   VCS  E+   + +   +R V  T MNE+SSRSH +F + +   N  TEQ++ G L L+DLAGSE++S++GA G  L E + INKSLS+L +VI ALA+   ++PYR+SK+T +LQ  LG + +T + +  SP S +  E+  +L F  R
Sbjct:  154 SVHEDKNRVPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQR 321          
BLAST of CX047053 vs. ExPASy Swiss-Prot
Match: KIFC2_MOUSE (Kinesin-like protein KIFC2 OS=Mus musculus GN=Kifc2 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.831e-28
Identity = 73/206 (35.44%), Postives = 117/206 (56.80%), Query Frame = -1
Query:  193 GNTHVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIFGVNEATEQQVQGVLNLIDLAGSERLSRSGATGD---------RLKETQAINKSLSSLSDVIFALAKKEDHIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAARVNACEIGVPSRQLTLKAADSRLSYG*NTDVFTLSCS 783
            G   V+ LT  DV ++  +  +L     +R+   T MN++SSRSH + TL +   +    Q + G L+L+DLAGSER+ ++G             RL+E QAIN+SL +L  V+ AL  +  H+P+R+S+LT LLQP L   +  ++ + IS  +  +GE++CSL+FA RV   E+G P+R+     + +  S   +T +   SC+
Sbjct:  559 GGIQVAGLTHWDVPNLETLHQMLSLGRSNRATAATVMNQHSSRSHALVTLTLRAASPPRPQGITGTLHLVDLAGSERVWKAGVASPVQRDPNGARRLREAQAINRSLLALGGVMAALRARRPHVPFRDSQLTRLLQPALWAGTTAVLLLQISTRAEDLGETICSLKFAERVGQVELG-PARRRRAPRSGTPSSLSTDTPLTGTSCT 763          
BLAST of CX047053 vs. ExPASy Swiss-Prot
Match: KIF3C_RAT (Kinesin-like protein KIF3C OS=Rattus norvegicus GN=Kif3c PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.831e-28
Identity = 79/203 (38.92%), Postives = 111/203 (54.68%), Query Frame = -1
Query:  301 PGKQYAIKHDANGNTHVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIFGVNEATEQQVQ---GVLNLIDLAGSERLSR--------------------------SGATGDRLKETQAINKSLSSLSDVIFALA-KKEDHIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAAR 819
            PGK+  +K +     ++ DL+     ++ EI  ++    Q+R+VG T MNE SSRSH +F + +      ++ Q     G LNL+DLAGSER ++                          SG++G+R KE   IN SLS+L +VI ALA  +  HIPYR+SKLT LLQ  LG ++KT+M   + P S S  ESL +LRFA R
Sbjct:  161 PGKRLELKENPETGVYIKDLSSFVTKNVKEIEHVMNLGNQARAVGSTHMNEVSSRSHAIFVITVECSERGSDGQDHIRVGKLNLVDLAGSERQNKAGPNTPGGPATQSTAGGGGGGGGTSGSGSSGERPKEASKINLSLSALGNVIAALAGNRSTHIPYRDSKLTRLLQDSLGGNAKTIMVATLGPASHSYDESLSTLRFANR 363          
BLAST of CX047053 vs. ExPASy Swiss-Prot
Match: FLA10_CHLRE (Kinesin-like protein FLA10 OS=Chlamydomonas reinhardtii GN=FLA10 PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 6.309e-28
Identity = 77/186 (41.40%), Postives = 107/186 (57.53%), Query Frame = -1
Query:  301 KQYAIKHDANGNTHVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIFGVNEATEQQVQ--------------GVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALAK-KEDHIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAAR 813
            K+  +K   +   +V DL+     +  E++ +L     +R VG T MN+ SSRSH +FT+ I  + +      Q              G LNL+DLAGSER  ++GATGDRLKE   IN SL++L +VI AL   K  HIPYR+SKLT LLQ  LG ++KT+M  NI P   +  E++ +LR+A R
Sbjct:  164 KKMELKESPDRGVYVKDLSQFVCKNYEEMNKVLLAGKDNRQVGATLMNQDSSRSHSIFTITIECIEKLESAAAQKPGAKKDDSNHVRVGKLNLVDLAGSERQDKTGATGDRLKEGIKINLSLTALGNVISALVDGKSGHIPYRDSKLTRLLQDSLGGNTKTVMVANIGPADWNYDETMSTLRYANR 349          
BLAST of CX047053 vs. ExPASy Swiss-Prot
Match: KIF5_DICDI (Kinesin-related protein 5 OS=Dictyostelium discoideum GN=kif5 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 8.240e-28
Identity = 78/195 (40.00%), Postives = 114/195 (58.46%), Query Frame = -1
Query:  265 DLTRTENGVPGKQYAIKHDANGNTHVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIFGVNEATEQQVQGVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALA-KKEDHIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAARVNACEIGVPSRQ 846
            DL   +N    KQ  I+   +   +V  LT   V S  +I  L++    SRSV KT MN+ SSRSH +  + I     +   + +G LNL+DLAGSE++S++GA G  L++ + IN+SLS L + I AL   K +HIP+R+SKLT LLQ  LG ++KT + V  SP   +V E++ +L+F AR  + +  V   Q
Sbjct:  148 DLLNPKNN---KQLKIRESKSQGIYVEGLTEEYVASEEDIMELIQVGESSRSVAKTNMNQRSSRSHSILIIAI-EQKSSDGSKKRGKLNLVDLAGSEKVSKTGAEGIVLEQAKKINQSLSLLGNCIHALTDSKREHIPFRDSKLTRLLQDSLGGNTKTTLLVTASPHFNNVDETISTLKFGARAKSIKNNVKVNQ 338          
BLAST of CX047053 vs. ExPASy Swiss-Prot
Match: KIF3C_PONAB (Kinesin-like protein KIF3C OS=Pongo abelii GN=KIF3C PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 8.240e-28
Identity = 79/201 (39.30%), Postives = 110/201 (54.73%), Query Frame = -1
Query:  301 PGKQYAIKHDANGNTHVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIFGVNEATEQQVQ---GVLNLIDLAGSERLSRSG------------------------ATGDRLKETQAINKSLSSLSDVIFALA-KKEDHIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAAR 819
            PGK+  +K +     ++ DL+     ++ EI  ++    Q+R+VG T MNE SSRSH +F + +      ++ Q     G LNL+DLAGSER +++G                        A G+R KE   IN SLS+L +VI ALA  +  HIPYR+SKLT LLQ  LG ++KT+M   + P S S  ESL +LRFA R
Sbjct:  161 PGKRLELKENPETGVYIKDLSSFVTKNVKEIEHVMNLGNQTRAVGSTHMNEVSSRSHAIFIITVECSERGSDGQDHIRVGKLNLVDLAGSERQNKAGPNTAGGASTPSSGGSGGGGGSGGGAGGERPKEASKINLSLSALGNVIAALAGNRSTHIPYRDSKLTRLLQDSLGGNAKTIMVATLGPASHSYDESLSTLRFANR 361          
BLAST of CX047053 vs. ExPASy Swiss-Prot
Match: KIF3C_HUMAN (Kinesin-like protein KIF3C OS=Homo sapiens GN=KIF3C PE=1 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 8.240e-28
Identity = 79/201 (39.30%), Postives = 110/201 (54.73%), Query Frame = -1
Query:  301 PGKQYAIKHDANGNTHVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIFGVNEATEQQVQ---GVLNLIDLAGSERLSRSG------------------------ATGDRLKETQAINKSLSSLSDVIFALA-KKEDHIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAAR 819
            PGK+  +K +     ++ DL+     ++ EI  ++    Q+R+VG T MNE SSRSH +F + +      ++ Q     G LNL+DLAGSER +++G                        A G+R KE   IN SLS+L +VI ALA  +  HIPYR+SKLT LLQ  LG ++KT+M   + P S S  ESL +LRFA R
Sbjct:  161 PGKRLELKENPETGVYIKDLSSFVTKNVKEIEHVMNLGNQTRAVGSTHMNEVSSRSHAIFIITVECSERGSDGQDHIRVGKLNLVDLAGSERQNKAGPNTAGGAATPSSGGGGGGGGSGGGAGGERPKEASKINLSLSALGNVIAALAGNRSTHIPYRDSKLTRLLQDSLGGNAKTIMVATLGPASHSYDESLSTLRFANR 361          
BLAST of CX047053 vs. ExPASy Swiss-Prot
Match: KIF1_DICDI (Kinesin-related protein 1 OS=Dictyostelium discoideum GN=kif1 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 8.240e-28
Identity = 81/190 (42.63%), Postives = 116/190 (61.05%), Query Frame = -1
Query:  307 DLTRTENGVPGKQYAIKHDANGNTHVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIFGVNEATEQQVQGV-----LNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALA-----KKEDHIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFA 846
            DL    N   G    ++++ +   +V DL+ + V S SEI  L+ + +++R+V  T MN  SSRSH VFT+ +F  ++  + +   +     ++L+DLAGSER + +GATG RLKE   INKSLS+L  VI ALA     KK   +PYR+S LTYLL+  LG +SKT+M   ISP   +  ESL +LR+A
Sbjct:  162 DLLNPNNNKTGG-LKVRNNPSTGPYVEDLSKLAVKSFSEIDMLMDEGSKARTVASTNMNATSSRSHAVFTI-VFTQSKIDKTRGTAIDRVSKISLVDLAGSERANSTGATGVRLKEGANINKSLSTLGKVISALAENSTSKKAVFVPYRDSVLTYLLKETLGGNSKTIMIAAISPADINYEESLSTLRYA 349          
BLAST of CX047053 vs. ExPASy Swiss-Prot
Match: KIF3C_MOUSE (Kinesin-like protein KIF3C OS=Mus musculus GN=Kif3c PE=2 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 1.076e-27
Identity = 78/203 (38.42%), Postives = 111/203 (54.68%), Query Frame = -1
Query:  301 PGKQYAIKHDANGNTHVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIFGVNEATEQQVQ---GVLNLIDLAGSERLSRSG--------------------------ATGDRLKETQAINKSLSSLSDVIFALA-KKEDHIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAAR 819
            PGK+  +K +     ++ DL+     ++ EI  ++    Q+R+VG T MNE SSRSH +F + +      ++ Q     G LNL+DLAGSER +++G                          ++G+R KE   IN SLS+L +VI ALA  +  HIPYR+SKLT LLQ  LG ++KT+M   + P S S  ESL +LRFA R
Sbjct:  161 PGKRLELKENPETGVYIKDLSSFVTKNVKEIEHVMNLGNQARAVGSTHMNEVSSRSHAIFVITVECSERGSDGQDHIRVGKLNLVDLAGSERQNKAGPNAAGGPATQPTAGGGSGSGSASGSASSGERPKEASKINLSLSALGNVIAALAGNRSTHIPYRDSKLTRLLQDSLGGNAKTIMVATLGPASHSYDESLSTLRFANR 363          
BLAST of CX047053 vs. ExPASy Swiss-Prot
Match: KINH_SYNRA (Kinesin heavy chain OS=Syncephalastrum racemosum PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.406e-27
Identity = 72/171 (42.11%), Postives = 101/171 (59.06%), Query Frame = -1
Query:  292 IKHDANGNTHVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIFGVNEATEQQVQGVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALAK-KEDHIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAARVNA 801
            I  D     +V  L  V V S  E+  ++R+ + +R V  T MN  SSRSH +    I   N  T     G L L+DLAGSE++ ++GA+G  L+E + INKSL++L  VI AL   K  H+PYR+SKLT +LQ  LG +S+T + +N SP S +  E+L +LRF AR  +
Sbjct:  158 IHEDKTKGVYVKGLLEVYVGSTDEVYEVMRRGSNNRVVAYTNMNAESSRSHSIVMFTITQKNVDTGAAKSGKLYLVDLAGSEKVGKTGASGQTLEEAKKINKSLTALGMVINALTDGKSSHVPYRDSKLTRILQESLGGNSRTTLIINCSPSSYNEAETLSTLRFGARAKS 328          
The following BLAST results are available for this feature:
BLAST of CX047053 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 193
Match NameE-valueIdentityDescription
KINH_HUMAN2.832e-2841.07Kinesin-1 heavy chain OS=Homo sapiens GN=KIF5B PE=... [more]
KIFC2_MOUSE4.831e-2835.44Kinesin-like protein KIFC2 OS=Mus musculus GN=Kifc... [more]
KIF3C_RAT4.831e-2838.92Kinesin-like protein KIF3C OS=Rattus norvegicus GN... [more]
FLA10_CHLRE6.309e-2841.40Kinesin-like protein FLA10 OS=Chlamydomonas reinha... [more]
KIF5_DICDI8.240e-2840.00Kinesin-related protein 5 OS=Dictyostelium discoid... [more]
KIF3C_PONAB8.240e-2839.30Kinesin-like protein KIF3C OS=Pongo abelii GN=KIF3... [more]
KIF3C_HUMAN8.240e-2839.30Kinesin-like protein KIF3C OS=Homo sapiens GN=KIF3... [more]
KIF1_DICDI8.240e-2842.63Kinesin-related protein 1 OS=Dictyostelium discoid... [more]
KIF3C_MOUSE1.076e-2738.42Kinesin-like protein KIF3C OS=Mus musculus GN=Kif3... [more]
KINH_SYNRA1.406e-2742.11Kinesin heavy chain OS=Syncephalastrum racemosum P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_11H03_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-11H03-P6-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047053 ID=CX047053; Name=CX047053; organism=Citrus sinensis; type=EST; length=864bp
TTTTTTTTACAGAAATTGCTTCCGCGGTTCTACCTTCAAATTGTATTCAT
CAACTGATGAACTTTGTCATACAACAAACAATAGTCACCTTTATAAGCCA
ATAAATTAACTATCATGCAATGAAAAGCAAAATTAAGATCCTATAATCTC
ACCATGACAACCCACTCCAGTGCATGTGGGACACAGTCATTATGAACATG
ACAAAGTAAACACGTCAGTATTTCAACCATAACTCAACCGAGAATCAGCA
GCCTTCAAAGTCAATTGGCGACTGGGAACCCCAATTTCGCAGGCATTGAC
TCTCGCAGCAAACCGTAGAGAGCAAAGGGACTCACCAACGGACGGAGAAT
CAGGCGAGATGTTAACAAACATTAAAGTTTTAGAATCTCTCCCAAGACAC
GGCTGAAGAAGATATGTCAGCTTCGAGTTCCTATATGGAATATGATCCTC
CTTCTTTGCCAAGGCAAATATAACATCACTCAATGATGACAGGCTTTTAT
TTATGGCCTGAGTTTCTTTCAAACGGTCACCAGTCGCCCCACTTCTTGAT
AATCGCTCACTTCCAGCTAGATCAATGAGGTTTAAGACACCCTGTACTTG
TTGTTCAGTTGCTTCATTTACTCCAAATATTCGTAACGTGAAGACAAAAT
GGCTTCTTGATGAATACTCATTCATTTGAGTCTTGCCCACAGACCTGCTC
TGTGCAGCCTGCCTTAAAAGCGATGAAATCTCTGATATGCTACAGACATC
AACAATCGTAAGGTCGCTGACATGAGTGTTTCCATTTGCATCATGTTTAA
TTGCATACTGCTTTCCAGGAACACCATTCTCCGTACGTGTCAAATCTGAA
CCACCAGCTCGACT
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