CX047053

Overview
NameCX047053
Unique NameCX047053
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length864
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047053 vs. ExPASy Swiss-Prot
Match: KIF1B_RAT (Kinesin-like protein KIF1B OS=Rattus norvegicus GN=Kif1b PE=1 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 1.455e-24
Identity = 73/174 (41.95%), Postives = 102/174 (58.62%), Query Frame = -1
Query:  301 HVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIFGVNEATEQQVQ----GVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALA------------KKEDHIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAAR 774
            +V DL+ + V S ++I+ L+    ++R+V  T MNE SSRSH VFT+      +  E  +       ++L+DLAGSER   +GA G RLKE   INKSL++L  VI ALA            KK D IPYR+S LT+LL+  LG +S+T M   +SP   +  E+L +LR+A R
Sbjct:  177 YVEDLSKLAVTSYTDIADLMDAGNKARTVAATNMNETSSRSHAVFTIVFTQKKQDPETNLSTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEVDNCTSKSKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADR 350          
BLAST of CX047053 vs. ExPASy Swiss-Prot
Match: KIF1B_MOUSE (Kinesin-like protein KIF1B OS=Mus musculus GN=Kif1b PE=1 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 1.455e-24
Identity = 73/174 (41.95%), Postives = 102/174 (58.62%), Query Frame = -1
Query:  301 HVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIFGVNEATEQQVQ----GVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALA------------KKEDHIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAAR 774
            +V DL+ + V S ++I+ L+    ++R+V  T MNE SSRSH VFT+      +  E  +       ++L+DLAGSER   +GA G RLKE   INKSL++L  VI ALA            KK D IPYR+S LT+LL+  LG +S+T M   +SP   +  E+L +LR+A R
Sbjct:  177 YVEDLSKLAVTSYTDIADLMDAGNKARTVAATNMNETSSRSHAVFTIVFTQKKQDPETNLSTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEVDNCTSKSKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADR 350          
BLAST of CX047053 vs. ExPASy Swiss-Prot
Match: KIF11_MOUSE (Kinesin-like protein KIF11 OS=Mus musculus GN=Kif11 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.455e-24
Identity = 75/179 (41.90%), Postives = 106/179 (59.22%), Query Frame = -1
Query:  250 VSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIFGVNEAT---EQQVQ-GVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALAKKEDHIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAARV-NACEIGVPSRQLTLKA 771
            +  L  + V +  E+  +L + A  R+   T MN YSSRSH VF++ I  + E T   E+ V+ G LNL+DLAGSE + RSGA   R +E   IN+SL +L  VI AL ++  HIPYR SKLT +LQ  LG  ++T +   ISP S ++ E+L +L +A R  N       +++LT KA
Sbjct:  195 IKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIH-MKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHIPYRESKLTRILQDSLGGRTRTSIIATISPASFNLEETLSTLEYAHRAKNIMNKPEVNQKLTKKA 372          
BLAST of CX047053 vs. ExPASy Swiss-Prot
Match: KIF11_HUMAN (Kinesin-like protein KIF11 OS=Homo sapiens GN=KIF11 PE=1 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 1.455e-24
Identity = 74/179 (41.34%), Postives = 106/179 (59.22%), Query Frame = -1
Query:  250 VSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIFGVNEAT---EQQVQ-GVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALAKKEDHIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAARV-NACEIGVPSRQLTLKA 771
            +  L  + V +  E+  +L + A  R+   T MN YSSRSH VF++ I  + E T   E+ V+ G LNL+DLAGSE + RSGA   R +E   IN+SL +L  VI AL ++  H+PYR SKLT +LQ  LG  ++T +   ISP S ++ E+L +L +A R  N       +++LT KA
Sbjct:  196 IKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIH-MKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQKLTKKA 373          
BLAST of CX047053 vs. ExPASy Swiss-Prot
Match: BIMC_EMENI (Kinesin-like protein bimC OS=Emericella nidulans GN=bimC PE=2 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 1.455e-24
Identity = 69/143 (48.25%), Postives = 87/143 (60.84%), Query Frame = -1
Query:  301 LLRQAAQSRSVGKTQMNEYSSRSHFVFTL--RIFGVNEATEQQV-QGVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALAKKEDHIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAAR 720
            LL+Q +  R V  T+ N+ SSRSH VFT+   I    E+ E+ V  G LNL+DLAGSE + RSGA   R  E   INKSL +L  VI AL  K  HIPYR SKLT LLQ  LG  +KT +   ISP   ++ E++ +L +A R
Sbjct:  270 LLQQGSHKRQVAATKCNDLSSRSHTVFTITVNIKRTTESGEEYVCPGKLNLVDLAGSENIGRSGAENKRATEAGLINKSLLTLGRVINALVDKSQHIPYRESKLTRLLQDSLGGRTKTCIIATISPARSNLEETISTLDYAFR 412          
BLAST of CX047053 vs. ExPASy Swiss-Prot
Match: UN104_CAEEL (Kinesin-like protein unc-104 OS=Caenorhabditis elegans GN=unc-104 PE=2 SV=3)

HSP 1 Score: 113.235 bits (282), Expect = 1.900e-24
Identity = 72/170 (42.35%), Postives = 103/170 (60.59%), Query Frame = -1
Query:  301 HVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIFGVNEATEQQVQ----GVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALA-----KKEDH---IPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAAR 774
            +V DLT + VCS  +I +L+ +  ++R+V  T MN  SSRSH VFT+ +       +  +       ++L+DLAGSER + +GA G RLKE   INKSL++L  VI  LA     KK+ +   IPYR+S LT+LL+  LG +SKT M   +SP   +  E+L +LR+A R
Sbjct:  174 YVDDLTKMAVCSYHDICNLMDEGNKARTVAATNMNSTSSRSHAVFTIVLTQKRHCADSNLDTEKHSKISLVDLAGSERANSTGAEGQRLKEGANINKSLTTLGLVISKLAEESTKKKKSNKGVIPYRDSVLTWLLRENLGGNSKTAMLAALSPADINFDETLSTLRYADR 343          
BLAST of CX047053 vs. ExPASy Swiss-Prot
Match: KIF1B_HUMAN (Kinesin-like protein KIF1B OS=Homo sapiens GN=KIF1B PE=1 SV=5)

HSP 1 Score: 113.235 bits (282), Expect = 1.900e-24
Identity = 73/174 (41.95%), Postives = 101/174 (58.05%), Query Frame = -1
Query:  301 HVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIFGVNEATEQQVQ----GVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALA------------KKEDHIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAAR 774
            +V DL+ + V S ++I+ L+    ++R+V  T MNE SSRSH VFT+         E  +       ++L+DLAGSER   +GA G RLKE   INKSL++L  VI ALA            KK D IPYR+S LT+LL+  LG +S+T M   +SP   +  E+L +LR+A R
Sbjct:  177 YVEDLSKLAVTSYTDIADLMDAGNKARTVAATNMNETSSRSHAVFTIVFTQKKHDNETNLSTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEVDNCTSKSKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADR 350          
BLAST of CX047053 vs. ExPASy Swiss-Prot
Match: KI21A_HUMAN (Kinesin-like protein KIF21A OS=Homo sapiens GN=KIF21A PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.900e-24
Identity = 72/191 (37.70%), Postives = 105/191 (54.97%), Query Frame = -1
Query:  301 IKHDANGNTHVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRI--------FGVNEATEQQV-------------QGVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFAL---AKKEDHIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAAR 801
            I  D+ G  +   +T   V + SE+   L+  A SR+   TQMN  SSRSH +FT+ +           + AT+ ++                 + +DLAGSERL R+GATG+R KE  +IN  L +L +VI AL   +K+  H+PYR+SKLT LLQ  LG +S+T+M   +SP      E+L +L++A R
Sbjct:  177 IHEDSTGGIYTVGVTTRTVNTESEMMQCLKLGALSRTTASTQMNVQSSRSHAIFTIHVCQTRVCPQIDADNATDNKIISESAQMNEFETLTAKFHFVDLAGSERLKRTGATGERAKEGISINCGLLALGNVISALGDKSKRATHVPYRDSKLTRLLQDSLGGNSQTIMIACVSPSDRDFMETLNTLKYANR 367          
BLAST of CX047053 vs. ExPASy Swiss-Prot
Match: KF22B_XENLA (Kinesin-like protein KIF22-B OS=Xenopus laevis GN=kif22-B PE=2 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 2.481e-24
Identity = 69/172 (40.12%), Postives = 103/172 (59.88%), Query Frame = -1
Query:  301 KQYAIKHDANGNTHVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIFGVNE-ATEQQVQGVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALAKKEDHIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAAR 813
            K   I+ D + N  +  +T+  + S  +       A+Q+R+V  T++N+ SSRSH V  +++    + A  +Q+ G L LIDLAGSE   R+G  G RLKE+ AIN SL +LS V+ AL +    IPYR+SKLT LLQ  LG  + ++M  NI+P+     ++L +L FAA+
Sbjct:  184 KDLPIREDKDHNILIPGVTLKTINSFGDFDEHFIPASQNRTVASTKLNDRSSRSHAVLLIKVQKSQQVAPFRQLIGKLYLIDLAGSEDNRRTGNQGIRLKESGAINSSLFTLSKVVDALNQGLPRIPYRDSKLTRLLQDSLGGSAHSVMITNIAPEQTYYFDTLTALNFAAK 355          
BLAST of CX047053 vs. ExPASy Swiss-Prot
Match: KIF4B_HUMAN (Chromosome-associated kinesin KIF4B OS=Homo sapiens GN=KIF4B PE=1 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 3.240e-24
Identity = 73/173 (42.20%), Postives = 98/173 (56.65%), Query Frame = -1
Query:  301 QYAIKHDANGNTHVSDLTIVDVCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIFGVNEATEQ-QVQGVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALA--KKEDHIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAAR 810
            Q  I+ D      +  LT   V    +  S L Q   SR+V  T MN  SSRSH +FT+ I    ++ +    +  L+L+DLAGSER  ++ A GDRLKE   IN+ L  L +VI AL   KK   +PYR+SKLT LLQ  LG +S TLM   +SP   ++ E+L +LR+A R
Sbjct:  160 QINIREDPKEGIKIVGLTEKTVLVALDTVSCLEQGNNSRTVASTAMNSQSSRSHAIFTISIEQRKKSDKNCSFRSKLHLVDLAGSERQKKTKAEGDRLKEGININRGLLCLGNVISALGDDKKGSFVPYRDSKLTRLLQDSLGGNSHTLMIACVSPADSNLEETLSTLRYADR 332          
The following BLAST results are available for this feature:
BLAST of CX047053 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 193
Match NameE-valueIdentityDescription
KIF1B_RAT1.455e-2441.95Kinesin-like protein KIF1B OS=Rattus norvegicus GN... [more]
KIF1B_MOUSE1.455e-2441.95Kinesin-like protein KIF1B OS=Mus musculus GN=Kif1... [more]
KIF11_MOUSE1.455e-2441.90Kinesin-like protein KIF11 OS=Mus musculus GN=Kif1... [more]
KIF11_HUMAN1.455e-2441.34Kinesin-like protein KIF11 OS=Homo sapiens GN=KIF1... [more]
BIMC_EMENI1.455e-2448.25Kinesin-like protein bimC OS=Emericella nidulans G... [more]
UN104_CAEEL1.900e-2442.35Kinesin-like protein unc-104 OS=Caenorhabditis ele... [more]
KIF1B_HUMAN1.900e-2441.95Kinesin-like protein KIF1B OS=Homo sapiens GN=KIF1... [more]
KI21A_HUMAN1.900e-2437.70Kinesin-like protein KIF21A OS=Homo sapiens GN=KIF... [more]
KF22B_XENLA2.481e-2440.12Kinesin-like protein KIF22-B OS=Xenopus laevis GN=... [more]
KIF4B_HUMAN3.240e-2442.20Chromosome-associated kinesin KIF4B OS=Homo sapien... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS09_11H03_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-11H03-P6-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047053 ID=CX047053; Name=CX047053; organism=Citrus sinensis; type=EST; length=864bp
TTTTTTTTACAGAAATTGCTTCCGCGGTTCTACCTTCAAATTGTATTCAT
CAACTGATGAACTTTGTCATACAACAAACAATAGTCACCTTTATAAGCCA
ATAAATTAACTATCATGCAATGAAAAGCAAAATTAAGATCCTATAATCTC
ACCATGACAACCCACTCCAGTGCATGTGGGACACAGTCATTATGAACATG
ACAAAGTAAACACGTCAGTATTTCAACCATAACTCAACCGAGAATCAGCA
GCCTTCAAAGTCAATTGGCGACTGGGAACCCCAATTTCGCAGGCATTGAC
TCTCGCAGCAAACCGTAGAGAGCAAAGGGACTCACCAACGGACGGAGAAT
CAGGCGAGATGTTAACAAACATTAAAGTTTTAGAATCTCTCCCAAGACAC
GGCTGAAGAAGATATGTCAGCTTCGAGTTCCTATATGGAATATGATCCTC
CTTCTTTGCCAAGGCAAATATAACATCACTCAATGATGACAGGCTTTTAT
TTATGGCCTGAGTTTCTTTCAAACGGTCACCAGTCGCCCCACTTCTTGAT
AATCGCTCACTTCCAGCTAGATCAATGAGGTTTAAGACACCCTGTACTTG
TTGTTCAGTTGCTTCATTTACTCCAAATATTCGTAACGTGAAGACAAAAT
GGCTTCTTGATGAATACTCATTCATTTGAGTCTTGCCCACAGACCTGCTC
TGTGCAGCCTGCCTTAAAAGCGATGAAATCTCTGATATGCTACAGACATC
AACAATCGTAAGGTCGCTGACATGAGTGTTTCCATTTGCATCATGTTTAA
TTGCATACTGCTTTCCAGGAACACCATTCTCCGTACGTGTCAAATCTGAA
CCACCAGCTCGACT
back to top