CX047039

Overview
NameCX047039
Unique NameCX047039
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length826
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047039 vs. ExPASy Swiss-Prot
Match: RL10_THENV (50S ribosomal protein L10e OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 8.732e-32
Identity = 74/168 (44.05%), Postives = 97/168 (57.74%), Query Frame = -3
Query:  321 RPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDE-FPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRK 821
            RPARCY++IK  PY +  +  G P  +I  +D+G         FP    LV  E+  +  +ALEAAR    KY++KY G   ++LR+   P HVLR N+ML+ AGADRLQ GMR AFG P G  ARV  GQV+     K  +  H +EALRRA  K P   +I++  K
Sbjct:    4 RPARCYKRIKGPPYTREEYIHGAPMIQIPKFDMGTTSAAARAAFPLVAKLVVQERGQIRMQALEAARQMAYKYLSKYVGDANYYLRLEAVPHHVLRENRMLAMAGADRLQEGMRLAFGSPAGRAARVEAGQVIFYAEFKPEHVAHMKEALRRASTKLPLPTRIVIEAK 171          
BLAST of CX047039 vs. ExPASy Swiss-Prot
Match: RL10_PYRAR (50S ribosomal protein L10e OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 8.732e-32
Identity = 74/168 (44.05%), Postives = 97/168 (57.74%), Query Frame = -3
Query:  321 RPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDE-FPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRK 821
            RPARCYR+IK  PY +  +  G P  +I  +D+G         FP    L+  E+  +  +ALEAAR   +KY+ KY G   ++LR+ V P HVLR N+ML+ AGADRLQ GMR AFG P G  ARV  GQ+L     K  +  H +EA RRA  K P   +I++  K
Sbjct:    4 RPARCYRRIKGPPYTREEYIHGAPMIQIPKFDMGTTSAAARATFPMVAKLIVEERGQIRMQALEAARQMASKYLTKYVGDANYYLRLNVIPHHVLRENRMLAMAGADRLQEGMRLAFGSPAGRAARVEPGQILFYAEFKPEHLAHIKEAFRRAASKLPLPTRIVIEPK 171          
BLAST of CX047039 vs. ExPASy Swiss-Prot
Match: RL10_HYPBU (50S ribosomal protein L10e OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 8.732e-32
Identity = 76/171 (44.44%), Postives = 106/171 (61.99%), Query Frame = -3
Query:  333 RRPARCYRQIKNK-----PYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRR--AKFKFPGRQKII 824
            ++PARCY + ++K     PY +  +  GVP PKI+ + +G       ++ + V +   E+  +   ALEAAR+A +KY++   G   +  RVRV+P HVLR NKM++ AGADRLQ GMR AFGKP GT ARV  GQ +L VR K  +  HA+EALRR  +K   P R ++I
Sbjct:    3 QKPARCYTKRRSKAFSGPPYTRKEYIHGVPPPKIQKFVMGNPH---GDYDYIVEVYVTERGQIRHNALEAARVAVHKYLSTTIGDQNYFFRVRVYPHHVLRENKMMAFAGADRLQEGMRQAFGKPVGTAARVYPGQAVLEVRVKKEHLDHAKEALRRGASKLPLPSRIRVI 170          
BLAST of CX047039 vs. ExPASy Swiss-Prot
Match: RL10_PYRAE (50S ribosomal protein L10e OS=Pyrobaculum aerophilum GN=rpl10e PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.541e-31
Identity = 75/168 (44.64%), Postives = 97/168 (57.74%), Query Frame = -3
Query:  321 RPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGV-DEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRK 821
            RPARCY++IK  PY +  +  G P  +I  +D+G         F     LV  E+  +  +ALEAAR   +KY+ KY G   ++LR+ V P HVLR N+ML+ AGADRLQ GMR AFG P G  ARV  GQVL     K  +  H +EALRRA  K P   +I++  K
Sbjct:    4 RPARCYKRIKGPPYTREEYIHGAPMIQIPKFDMGTTSAAARTAFTMTAKLVVEERGQIRMQALEAARQMASKYLTKYVGDANYYLRLNVVPHHVLRENRMLAMAGADRLQEGMRLAFGSPAGRAARVEPGQVLFYAEFKPEHLPHIKEALRRAASKLPLPTRIVIEPK 171          
BLAST of CX047039 vs. ExPASy Swiss-Prot
Match: RL10_PYRIL (50S ribosomal protein L10e OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.334e-31
Identity = 74/168 (44.05%), Postives = 98/168 (58.33%), Query Frame = -3
Query:  321 RPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDE-FPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRK 821
            RPARCYR+IK  PY +  +  G P  +I  +D+G+        F     LV  E+  +  +ALEAAR    KY++KY G   ++LR+ V P HVLR N+ML+ AGADRLQ GMR AFG P G  ARV  GQV+     +  +  H +EALRRA  K P   +I++  K
Sbjct:    4 RPARCYRRIKGPPYTREEYIHGAPMIQIPKFDMGVTSAAARAAFSMVAKLVVEERGQIRMQALEAARQMAYKYLSKYVGDANYYLRLNVVPHHVLRENRMLAMAGADRLQEGMRLAFGSPAGRAARVEPGQVIFYAEFRPEHIAHIKEALRRAASKLPLPTRIVIETK 171          
BLAST of CX047039 vs. ExPASy Swiss-Prot
Match: RL10_METJA (50S ribosomal protein L10e OS=Methanocaldococcus jannaschii GN=rpl10e PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 7.392e-31
Identity = 71/166 (42.77%), Postives = 99/166 (59.64%), Query Frame = -3
Query:  324 RPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 821
            RP RCYR +   PY +  + +GVP PK+  + +G       EFP  V+LV+     +   ALEAAR+A NKY+ K  G+  +  ++RV+P  +LR +KM + AGADR+  GMR AFGKP GT ARV  GQ +L+V         A+EALRRA  K P   +I++ +
Sbjct:    5 RPNRCYRDVDKPPYTRKEYVKGVPQPKVVHFIMGNLSA---EFPVKVNLVATRPIQIRHNALEAARVAANKYLTKMCGRMGYKFQIRVYPHQILREHKMATGAGADRISDGMRLAFGKPIGTAARVKEGQAILTVWVNPDKFPAAKEALRRAAMKLPVPCRIVIEQ 167          
BLAST of CX047039 vs. ExPASy Swiss-Prot
Match: RL10_ARCFU (50S ribosomal protein L10e OS=Archaeoglobus fulgidus GN=rpl10e PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 9.655e-31
Identity = 70/167 (41.92%), Postives = 105/167 (62.87%), Query Frame = -3
Query:  324 RRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 824
            R+PAR +R+++ +PY ++ +  G P  ++R++D+G K     +FP  + LV+ E   +   ALEAAR+  NKY+++ AG   + L++R+ P H+LR +KM   AGADR+  GMR AFGKP G  ARV  G  ++SV  K  +   A+EALRRA  K P   KI+V +
Sbjct:    3 RKPARMWRRLE-RPYTRTEYIDGAPGTRVRMFDMGNKSA---DFPVMLTLVAKEAVQIRENALEAARVVANKYVSRRAGASNYKLKLRIFPHHILREHKMAVGAGADRISQGMRAAFGKPVGRAARVKPGTKIMSVWVKPEHFEIAKEALRRAAMKMPTPTKIVVEK 165          
BLAST of CX047039 vs. ExPASy Swiss-Prot
Match: RL10_META3 (50S ribosomal protein L10e OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.647e-30
Identity = 73/166 (43.98%), Postives = 99/166 (59.64%), Query Frame = -3
Query:  324 RPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 821
            RP++CYR+I    Y + ++ R VP PK+  Y  G   KG D FP  VHLV  +   +   ALE+ARI  NKY     G+  +  ++RV+P  VLR NKM S AGADR+  GMR +FGK  GT ARV  GQ ++++     N  HA+EALRR   K P + KI++ +
Sbjct:    4 RPSKCYREINKPAYTRKKYIRAVPQPKVVHYVNG--NKGGD-FPVEVHLVVKDDIQIRHNALESARIVGNKYTQNKCGRLGYKFQIRVYPHQVLRENKMASGAGADRISDGMRLSFGKAVGTAARVRKGQKIITISTTPENVIHAKEALRRCNMKMPVKCKIVIGK 166          
BLAST of CX047039 vs. ExPASy Swiss-Prot
Match: RL10_METMP (50S ribosomal protein L10e OS=Methanococcus maripaludis GN=rpl10e PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.919e-29
Identity = 69/166 (41.57%), Postives = 97/166 (58.43%), Query Frame = -3
Query:  324 RPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 821
            RPARCYR I+ + Y +  + R VP PK+  Y +G       EFP  V LVS     +   ALE++RIA NKY+    G+  +   +RV+P  +LR NKM + AGADR+  GMR +FGK  GT A+V  GQ ++++       + A+EALRR   K P   KI+V++
Sbjct:    4 RPARCYRTIERRSYTRKEYVRAVPQPKVVHYVMGNPSA---EFPVQVQLVSKSDILIRHNALESSRIAGNKYILSECGRTGYLFNIRVYPHEILRENKMAAGAGADRISDGMRLSFGKAVGTAAKVKKGQEIITIGVNPEKFYAAKEALRRCSMKLPTACKIVVTK 166          
BLAST of CX047039 vs. ExPASy Swiss-Prot
Match: RL10_THEVO (50S ribosomal protein L10e OS=Thermoplasma volcanium GN=rpl10e PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.180e-28
Identity = 67/166 (40.36%), Postives = 103/166 (62.05%), Query Frame = -3
Query:  324 RPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 821
            +PAR Y +I    Y +  F  GVP PKI  +  G +K+   +FP  + L++ E   V   ALEAAR++ N+ M + AG D F+L+V  +P HVLR +KM + AGADR+ +GMR AFG+P GT ARV    V++  R  ++++H  + AL++A  K P   K+++++
Sbjct:    4 KPARMYTRITGPAYTRKEFMGGVPYPKITTFVQGNQKR---DFPIEMQLIAMESCQVRHTALEAARVSVNRRMTEAAGLDNFYLKVVPYPHHVLREHKMATGAGADRISSGMRAAFGRPVGTAARVYQNDVIMIGRTDEAHAHELKIALKKAAIKLPTPCKVVITK 166          
The following BLAST results are available for this feature:
BLAST of CX047039 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RL10_THENV8.732e-3244.0550S ribosomal protein L10e OS=Thermoproteus neutro... [more]
RL10_PYRAR8.732e-3244.0550S ribosomal protein L10e OS=Pyrobaculum arsenati... [more]
RL10_HYPBU8.732e-3244.4450S ribosomal protein L10e OS=Hyperthermus butylic... [more]
RL10_PYRAE2.541e-3144.6450S ribosomal protein L10e OS=Pyrobaculum aerophil... [more]
RL10_PYRIL4.334e-3144.0550S ribosomal protein L10e OS=Pyrobaculum islandic... [more]
RL10_METJA7.392e-3142.7750S ribosomal protein L10e OS=Methanocaldococcus j... [more]
RL10_ARCFU9.655e-3141.9250S ribosomal protein L10e OS=Archaeoglobus fulgid... [more]
RL10_META31.647e-3043.9850S ribosomal protein L10e OS=Methanococcus aeolic... [more]
RL10_METMP6.919e-2941.5750S ribosomal protein L10e OS=Methanococcus maripa... [more]
RL10_THEVO1.180e-2840.3650S ribosomal protein L10e OS=Thermoplasma volcani... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_11G07_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-11G07-N14-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047039 ID=CX047039; Name=CX047039; organism=Citrus sinensis; type=EST; length=826bp
TTTTTTTTTTTTTTTTTCACTAAGACAACTGCAAGGATCACATAGTTAAA
CCAAATAAACATGTCACTTCAACTTGAGAAATCCAGTTCAACTGAGAAAA
GGTACGAAATGGAAAATAATAAACTAGACAGTAGTCACAGCTCTGCTATT
TTGAGACAGTAAATATCTTAGGTTGTTGCTTCCAGGAAAGCTCTTCCAGG
TTGGCGTTGAGCCAAAGGACCATGACATCCGAGAAGCTTGGCATTCACAC
CATCTGGGACAATCCTGTTCTCCGACTTCCACCTCAAATAATCAGCACGG
CTGAACTTGGTAAATCCCCATTTCCTGCTGACAATAATCTTTTGACGACC
AGGAAACTTGAACTTAGCACGGCGAAGGGCCTCCTGAGCATGGTGGCTGT
TACTGTCCTTGCAACGGACAGAAAGCAAGACCTGCCCGATAGCAACACGA
GCACAGGTTCCTTGGGGCTTTCCAAAAGCACCCCTCATTCCAGTCTGGAG
CCGATCAGCCCCAGCACACGAAAGCATCTTGTTAATGCGCAGAACATGGA
AGGGGTGCACCCTCACTCGCAAATGGAAAGCATCCTTGCCAGCGTACTTG
GCCATGTACTTGTTGCAAGCGATACGGGCAGCTTCCAAGGCCTCGCTCGA
CACGTTCTCCTTCTCCCAACTGACGAGGTGAACGCAGAAGGGGAACTCGT
CGACGCCTTTCTTCTTCATCCCGACATCGTAGATTCTGATCTTGGGATCG
GGGACACCGCGGCAAAAGCGGGACTTTGGGTAGGGTTTGTTCTTGATTTG
GCGGTAACACCTTGCCGGTCTTCTTC
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