CX047039

Overview
NameCX047039
Unique NameCX047039
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length826
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047039 vs. ExPASy Swiss-Prot
Match: RL10_SULIK (50S ribosomal protein L10e OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.326e-23
Identity = 63/164 (38.41%), Postives = 92/164 (56.10%), Query Frame = -3
Query:  336 RPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKD-AFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV-AIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKI 821
            RP RCYR      Y +  +  G+P PKI  +  G       ++ + V L++ E   +   ALEA R    K + K  G + +F + +  +P HVLR NKM++ AGADRLQ GMR +FG P GT AR+  +G++L+ V+ K  +   A+EAL+ A  K P R +I
Sbjct:    4 RPGRCYRHFSGPAYTRKEYIPGIPQPKITKFTSGNPN---GDYDYEVRLITTEIGQIRHNALEAVRTITLKTLTKRTGSETSFFMWILKYPHHVLRENKMMAFAGADRLQDGMRLSFGTPIGTAARIEKLGEILIVVKVKKEHLDFAKEALKIASKKLPLRTRI 164          
BLAST of CX047039 vs. ExPASy Swiss-Prot
Match: RL10_SULIA (50S ribosomal protein L10e OS=Sulfolobus islandicus (strain M.16.27) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.326e-23
Identity = 63/164 (38.41%), Postives = 92/164 (56.10%), Query Frame = -3
Query:  336 RPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKD-AFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV-AIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKI 821
            RP RCYR      Y +  +  G+P PKI  +  G       ++ + V L++ E   +   ALEA R    K + K  G + +F + +  +P HVLR NKM++ AGADRLQ GMR +FG P GT AR+  +G++L+ V+ K  +   A+EAL+ A  K P R +I
Sbjct:    4 RPGRCYRHFSGPAYTRKEYIPGIPQPKITKFTSGNPN---GDYDYEVRLITTEIGQIRHNALEAVRTITLKTLTKRTGSETSFFMWILKYPHHVLRENKMMAFAGADRLQDGMRLSFGTPIGTAARIEKLGEILIVVKVKKEHLDFAKEALKIASKKLPLRTRI 164          
BLAST of CX047039 vs. ExPASy Swiss-Prot
Match: RL10_METBF (50S ribosomal protein L10e OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.326e-23
Identity = 61/165 (36.97%), Postives = 96/165 (58.18%), Query Frame = -3
Query:  330 RRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIV 824
            R+P   YR ++ + + + ++  GVP  ++  YD+G K      FP  + L+  EK  +   ALEAARI  N+++ +  GK  +++++RV+P  VLR NK  + AGADR+ +GMR AFGK  GT ARV   Q + +V  +  N   A++AL  A  K P   +I++
Sbjct:    3 RKPGSMYRNVRQRSFTRRKYMGGVPGSQVIHYDMGDKAN--TSFPIKLSLLVEEKCQIRHTALEAARITANRHLIEDTGKMGYYMKLRVYPHEVLRENKQATGAGADRVSSGMRRAFGKNVGTAARVNPFQKIFTVAVEKQNFVAAKKALWHAGQKLPTPCRIVI 165          
BLAST of CX047039 vs. ExPASy Swiss-Prot
Match: RL10_METHJ (50S ribosomal protein L10e OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.344e-23
Identity = 61/168 (36.31%), Postives = 90/168 (53.57%), Query Frame = -3
Query:  321 RRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRK 824
            R+P   YR +  K Y +  +  G+P  K+  +D+G       EFP  V LV  E   +   ALEAAR++ N+ + K  G+  +HL++R +P HVLR NK  + AGADR+  GMR AFGK  GT AR    Q + +V    ++    ++ALR    K P    +++  K
Sbjct:    3 RKPNSMYRNLAKKAYTRKEYMGGIPGVKVVHFDMGNL---TSEFPMEVSLVVDESCQIRHSALEAARMSINRKLNKELGRMNYHLKLRTYPHHVLRENKQATGAGADRVSQGMRLAFGKAVGTAARCQQNQKIFTVFSNPASVEKIKDALRHGGHKLPSPTHLVIEMK 167          
BLAST of CX047039 vs. ExPASy Swiss-Prot
Match: RL10_SULSO (50S ribosomal protein L10e OS=Sulfolobus solfataricus GN=rpl10e PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.673e-23
Identity = 62/164 (37.80%), Postives = 92/164 (56.10%), Query Frame = -3
Query:  336 RPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKD-AFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV-AIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKI 821
            RP RCYR      Y +  +  G+P PKI  +  G       ++ + V L++ E   +   ALEA R    K ++K  G + +F + +  +P HVLR NKM++ AGADRLQ GMR +FG P GT AR+  +G+ L+ ++ K  +   A+EAL+ A  K P R +I
Sbjct:    4 RPGRCYRHFSGPAYTRKEYIPGIPQPKITKFTSGNPN---GDYDYEVRLITTEIGQIRHNALEAVRTLTLKTLSKKTGSETSFFMWILKYPHHVLRENKMMAFAGADRLQDGMRLSFGTPIGTAARIEKLGETLIVIKVKKEHLEFAKEALKIASKKLPLRTRI 164          
BLAST of CX047039 vs. ExPASy Swiss-Prot
Match: RL10_METST (50S ribosomal protein L10e OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.673e-23
Identity = 60/162 (37.04%), Postives = 92/162 (56.79%), Query Frame = -3
Query:  303 KPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKF 788
            +PY +  + R +P  KI  YD+G       EFP  V L   E  ++S  +LEAARIA N+Y+ +  GK  + L++R +P H++R N M + AGADR+Q+GMRGAFGK   + A V   Q +++   +  +   A+ AL RA  K P   K+++ +     +F
Sbjct:    3 RPYTRKDYIRKIPASKIVQYDMGNLS---GEFPLEVTLAVKEHTHLSHNSLEAARIAANRYLQRTTGKLGYRLKIRTYPHHIVRENPMATGAGADRVQSGMRGAFGKAVSSEALVRANQKIITAYVQVKDFEKAKVALNRAAMKLPVTCKLVIDKGHDLVQF 161          
BLAST of CX047039 vs. ExPASy Swiss-Prot
Match: RL10_HALSA (50S ribosomal protein L10e OS=Halobacterium salinarium GN=rpl10e PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.816e-22
Identity = 58/166 (34.94%), Postives = 91/166 (54.82%), Query Frame = -3
Query:  324 RPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 821
            +PA  YR+I    Y +  +  G+P  KI  + +G  +   D++P  + LV  E+  +   +LEAAR++ N+++ K  G+  + +++R  P  ++R NK  + AGADR+  GMR AFG P GT AR+  G  L +  C+   +   +EA RRA  K     KI V R
Sbjct:    4 KPASMYRKIDKPSYTRRDYVTGIPGSKIAQHKMGDLQADADDYPVQISLVPQEECQLRHGSLEAARLSANRHLIKELGEGNYKMQLRKFPHQIIRENKQATGAGADRVSDGMRQAFGVPVGTAARIQPGDQLFTAYCEVEQAAAVKEAFRRAYNKITPPCKINVER 169          
BLAST of CX047039 vs. ExPASy Swiss-Prot
Match: RL10_HALS3 (50S ribosomal protein L10e OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.816e-22
Identity = 58/166 (34.94%), Postives = 91/166 (54.82%), Query Frame = -3
Query:  324 RPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 821
            +PA  YR+I    Y +  +  G+P  KI  + +G  +   D++P  + LV  E+  +   +LEAAR++ N+++ K  G+  + +++R  P  ++R NK  + AGADR+  GMR AFG P GT AR+  G  L +  C+   +   +EA RRA  K     KI V R
Sbjct:    4 KPASMYRKIDKPSYTRRDYVTGIPGSKIAQHKMGDLQADADDYPVQISLVPQEECQLRHGSLEAARLSANRHLIKELGEGNYKMQLRKFPHQIIRENKQATGAGADRVSDGMRQAFGVPVGTAARIQPGDQLFTAYCEVEQAAAVKEAFRRAYNKITPPCKINVER 169          
BLAST of CX047039 vs. ExPASy Swiss-Prot
Match: RL10_HALWD (50S ribosomal protein L10e OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.070e-21
Identity = 58/173 (33.53%), Postives = 98/173 (56.65%), Query Frame = -3
Query:  327 RPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRA--KFKFPGR------QKIIVS 821
            +PA  YR++    Y +  +  G+P  KI  +++G  + G  ++P  + L   E+  +   +LE+AR++ N+ M K  G+D + + +R  P  +LR NK  + AGADR+  GMR AFGKP GT AR+   + + ++ C+  ++  A++ LRRA  K   P R      QK+++S
Sbjct:    4 KPASMYRKLSKPSYTRRDYVTGIPGSKIAQHNMGNLQTGPQDYPVQISLRIEEECQIRHGSLESARLSANRTMLKQVGQDNYKMVLRKFPHQILRENKQATGAGADRVSDGMRQAFGKPVGTAARIQQNERVFTIYCEVDDASVAKDGLRRAYNKMSPPCRIDVEKGQKLLIS 176          
BLAST of CX047039 vs. ExPASy Swiss-Prot
Match: RL10_HALLT (50S ribosomal protein L10e OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.495e-20
Identity = 54/166 (32.53%), Postives = 88/166 (53.01%), Query Frame = -3
Query:  324 RPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 821
            +PA  YR I    Y +  +  G+P  KI  +++G      D++P  + L   E+  +   +LE++R++ N+++ K  G+  + + +R  P  V+R NK  + AGADR+  GMR AFGKP GT AR+    ++ +  C    +   +EA RRA  K     +I V R
Sbjct:    4 KPASMYRTIDKPSYTRREYITGIPGSKIAQHNMGDLSAEPDDYPVQISLRVEEELQIRHGSLESSRLSANRHLIKELGEGNYKMTLRKFPHQVIRENKQATGAGADRVSDGMRQAFGKPVGTAARLNKDDIVFTAYCDVEQASVVKEAFRRAYNKLSPPCRITVDR 169          
The following BLAST results are available for this feature:
BLAST of CX047039 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RL10_SULIK3.326e-2338.4150S ribosomal protein L10e OS=Sulfolobus islandicu... [more]
RL10_SULIA3.326e-2338.4150S ribosomal protein L10e OS=Sulfolobus islandicu... [more]
RL10_METBF3.326e-2336.9750S ribosomal protein L10e OS=Methanosarcina barke... [more]
RL10_METHJ4.344e-2336.3150S ribosomal protein L10e OS=Methanospirillum hun... [more]
RL10_SULSO5.673e-2337.8050S ribosomal protein L10e OS=Sulfolobus solfatari... [more]
RL10_METST5.673e-2337.0450S ribosomal protein L10e OS=Methanosphaera stadt... [more]
RL10_HALSA2.816e-2234.9450S ribosomal protein L10e OS=Halobacterium salina... [more]
RL10_HALS32.816e-2234.9450S ribosomal protein L10e OS=Halobacterium salina... [more]
RL10_HALWD1.070e-2133.5350S ribosomal protein L10e OS=Haloquadratum walsby... [more]
RL10_HALLT4.495e-2032.5350S ribosomal protein L10e OS=Halorubrum lacusprof... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_11G07_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-11G07-N14-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047039 ID=CX047039; Name=CX047039; organism=Citrus sinensis; type=EST; length=826bp
TTTTTTTTTTTTTTTTTCACTAAGACAACTGCAAGGATCACATAGTTAAA
CCAAATAAACATGTCACTTCAACTTGAGAAATCCAGTTCAACTGAGAAAA
GGTACGAAATGGAAAATAATAAACTAGACAGTAGTCACAGCTCTGCTATT
TTGAGACAGTAAATATCTTAGGTTGTTGCTTCCAGGAAAGCTCTTCCAGG
TTGGCGTTGAGCCAAAGGACCATGACATCCGAGAAGCTTGGCATTCACAC
CATCTGGGACAATCCTGTTCTCCGACTTCCACCTCAAATAATCAGCACGG
CTGAACTTGGTAAATCCCCATTTCCTGCTGACAATAATCTTTTGACGACC
AGGAAACTTGAACTTAGCACGGCGAAGGGCCTCCTGAGCATGGTGGCTGT
TACTGTCCTTGCAACGGACAGAAAGCAAGACCTGCCCGATAGCAACACGA
GCACAGGTTCCTTGGGGCTTTCCAAAAGCACCCCTCATTCCAGTCTGGAG
CCGATCAGCCCCAGCACACGAAAGCATCTTGTTAATGCGCAGAACATGGA
AGGGGTGCACCCTCACTCGCAAATGGAAAGCATCCTTGCCAGCGTACTTG
GCCATGTACTTGTTGCAAGCGATACGGGCAGCTTCCAAGGCCTCGCTCGA
CACGTTCTCCTTCTCCCAACTGACGAGGTGAACGCAGAAGGGGAACTCGT
CGACGCCTTTCTTCTTCATCCCGACATCGTAGATTCTGATCTTGGGATCG
GGGACACCGCGGCAAAAGCGGGACTTTGGGTAGGGTTTGTTCTTGATTTG
GCGGTAACACCTTGCCGGTCTTCTTC
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