CX047027

Overview
NameCX047027
Unique NameCX047027
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length903
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047027 vs. ExPASy Swiss-Prot
Match: LDOX_VITVI (Leucoanthocyanidin dioxygenase OS=Vitis vinifera PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 9.822e-19
Identity = 52/159 (32.70%), Postives = 83/159 (52.20%), Query Frame = -1
Query:  403 PDLEDDYRKAMKEFAVELEKVAXXXXXXXXXXXXXXXXXLKKVFYGSKGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDEVSGLQLLKDDQWVDVPPMKHSIVINLGDQLEVITNGKYKSVLHRVIAQTEGNRMSIASFYNPGSDAVIYPA 879
            P    DY  A  E++V+L  +A                 L+K   G +      K++ YP CP+P+L  G+ AHTD   +  +  +  V GLQL  + +WV    + +SI++++GD +E+++NGKYKS+LHR +   E  R+S A F  P  + +I  A
Sbjct:  165 PKTPSDYVPATCEYSVKLRSLATKILSVLSLGLGLEEGRLEKEVGGMEELLLQKKINYYPKCPQPELALGVEAHTDVSALTFILHN-MVPGLQLFYEGKWVTAKCVPNSIIMHIGDTIEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKEKIILKA 322          
BLAST of CX047027 vs. ExPASy Swiss-Prot
Match: IDS3_HORVU (2'-deoxymugineic-acid 2'-dioxygenase OS=Hordeum vulgare GN=IDS3 PE=1 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 2.858e-18
Identity = 51/149 (34.23%), Postives = 79/149 (53.02%), Query Frame = -1
Query:  268 VSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDEVSGLQLLKDDQWVDVPPMKHSIVINLGDQLEVITNGKYKSVLHRVIAQTEGNRMSIASFYNPGSDAVIYPAPALVEKEAVNSQVYPKFVFEDYMKLYAGLKFQAKEPRFEAMKNME 714
            +++YP CP PD   G   H D   I LL     V+GL++     W+ V P  ++ V+N G QLEV+TNG  KS+ HR +  +   R S+A+F  P  + +I PA   + KE  N   Y   +F D+M++Y  +K  +       +KN++
Sbjct:  191 INHYPSCPNPDKALGQPPHCDRNLITLLLPG-AVNGLEVSYKGDWIKVDPAPNAFVVNFGQQLEVVTNGLLKSIEHRAMTNSALARTSVATFIMPTQECLIGPAKEFLSKE--NPPCYRTTMFRDFMRIYNVVKLGSSLNLTTNLKNVQ 336          
BLAST of CX047027 vs. ExPASy Swiss-Prot
Match: G2OX_PHACN (Gibberellin 2-beta-dioxygenase OS=Phaseolus coccineus GN=GA2OX1 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.852e-17
Identity = 52/134 (38.81%), Postives = 79/134 (58.96%), Query Frame = -1
Query:  331 KVSNYPPCPKPDLIK----GLRAHTDAGGIILLFQDDEVSGLQL-LKDDQWVDVPPMKHSIVINLGDQLEVITNGKYKSVLHRVIAQTEGNRMSIASFYNPGSDAVIYPAPALVEKEAVNSQVYPKFVFEDYMK 717
            ++++YPPCP+   +     G   HTD   II + + +  SGLQ+ L D  WV VPP + S  IN+GD L+V+TNG++KSV HRV+A T  +R+S+  F  P     I P P+++ K      +Y +F + +Y K
Sbjct:  181 RLNHYPPCPEVQALNRNLVGFGEHTDPQ-IISVLRSNSTSGLQICLTDGTWVSVPPDQTSFFINVGDALQVMTNGRFKSVKHRVLADTTKSRLSMIYFGGPALSENIAPLPSVMLKG--EECLYKEFTWCEYKK 311          
BLAST of CX047027 vs. ExPASy Swiss-Prot
Match: GAO1B_WHEAT (Gibberellin 20 oxidase 1-B OS=Triticum aestivum GN=GA20ox1B PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.568e-16
Identity = 44/128 (34.38%), Postives = 70/128 (54.69%), Query Frame = -1
Query:  334 KVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDEVSGLQLLKDDQWVDVPPMKHSIVINLGDQLEVITNGKYKSVLHRVIAQTEGNRMSIASFYNPGSDAVIYPAPALVEKEAVNSQVYPKFVFEDYM 717
            +++ YPPC +P    G   H D   + +L QD+ V GLQ+  + +W  + P   + V+N+GD    ++NG+YKS LHR +  ++  R S+A F  P  D V+ P   LV  +A N + YP F +   +
Sbjct:  205 RLNYYPPCQRPMETLGTGPHCDPTSLTILHQDN-VGGLQVHTEGRWRSIRPRADAFVVNIGDTFMALSNGRYKSCLHRAVVNSKVPRKSLAFFLCPEMDKVVAPPGTLV--DAANPRAYPDFTWRSLL 329          
BLAST of CX047027 vs. ExPASy Swiss-Prot
Match: G2OX1_ARATH (Gibberellin 2-beta-dioxygenase 1 OS=Arabidopsis thaliana GN=GA2OX1 PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.568e-16
Identity = 48/135 (35.56%), Postives = 77/135 (57.04%), Query Frame = -1
Query:  337 KVSNYPPCPKPDL-------IKGLRAHTDAGGIILLFQDDEVSGLQL-LKDDQWVDVPPMKHSIVINLGDQLEVITNGKYKSVLHRVIAQTEGNRMSIASFYNPGSDAVIYPAPALVEKEAVNSQVYPKFVFEDY 717
            ++++YPPCP  +        + G   HTD   II + + +  SGLQ+ L D  W+ VPP   S   N+GD L+V+TNG++KSV HRV+A  + +R+S+  F  P     I P   L++ E  + ++Y +F + +Y
Sbjct:  171 RLNHYPPCPLSNKKTNGGKNVIGFGEHTDPQ-IISVLRSNNTSGLQINLNDGSWISVPPDHTSFFFNVGDSLQVMTNGRFKSVRHRVLANCKKSRVSMIYFAGPSLTQRIAPLTCLIDNE--DERLYEEFTWSEY 302          
BLAST of CX047027 vs. ExPASy Swiss-Prot
Match: GAO1D_WHEAT (Gibberellin 20 oxidase 1-D OS=Triticum aestivum GN=GA20ox1D PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.675e-16
Identity = 44/128 (34.38%), Postives = 69/128 (53.91%), Query Frame = -1
Query:  334 KVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDEVSGLQLLKDDQWVDVPPMKHSIVINLGDQLEVITNGKYKSVLHRVIAQTEGNRMSIASFYNPGSDAVIYPAPALVEKEAVNSQVYPKFVFEDYM 717
            +++ YPPC +P    G   H D   + +L QD+ V GLQ+  + +W  + P   + V+N+GD    ++NG+YKS LHR +  +   R S+A F  P  D V+ P   LV  +A N + YP F +   +
Sbjct:  205 RLNYYPPCQRPLETLGTGPHCDPTSLTILHQDN-VGGLQVHTEGRWRSIRPRADAFVVNIGDTFMALSNGRYKSCLHRAVVNSRVPRKSLAFFLCPEMDKVVAPPGTLV--DAANPRAYPDFTWRSLL 329          
BLAST of CX047027 vs. ExPASy Swiss-Prot
Match: LDOX_MAIZE (Leucoanthocyanidin dioxygenase OS=Zea mays GN=A2 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.493e-16
Identity = 43/110 (39.09%), Postives = 67/110 (60.91%), Query Frame = -1
Query:  391 KVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDEVSGLQLLKDDQWVDVPPMKHSIVINLGDQLEVITNGKYKSVLHRVIAQTEGNRMSIASFYNPGSDAV-IYPAPALV 717
            K++ YP CP+P+L  G+ AHTD   +  +  +  V GLQ+L   +WV       +I++++GD LE+++NG+Y SVLHR +   E  R+S   F  P  D+V ++P P LV
Sbjct:  235 KINYYPRCPQPELAVGVEAHTDVSALSFILHNG-VPGLQVLHGARWVTARHEPGTIIVHVGDALEILSNGRYTSVLHRGLVNREAVRISWVVFCEPPPDSVLLHPLPELV 343          
BLAST of CX047027 vs. ExPASy Swiss-Prot
Match: GAO1A_WHEAT (Gibberellin 20 oxidase 1-A OS=Triticum aestivum GN=GA20ox1A PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.563e-16
Identity = 44/128 (34.38%), Postives = 69/128 (53.91%), Query Frame = -1
Query:  334 KVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDEVSGLQLLKDDQWVDVPPMKHSIVINLGDQLEVITNGKYKSVLHRVIAQTEGNRMSIASFYNPGSDAVIYPAPALVEKEAVNSQVYPKFVFEDYM 717
            +++ YPPC +P    G   H D   + +L QD+ V GLQ+  + +W  + P   + V+N+GD    ++NG+YKS LHR +  +   R S+A F  P  D V+ P   LV  +A N + YP F +   +
Sbjct:  205 RLNYYPPCQRPLETLGTGPHCDPTSLTILHQDN-VGGLQVHTEGRWRSIRPRADAFVVNIGDTFMALSNGRYKSCLHRAVVNSRVPRKSLAFFLCPEMDKVVAPPGTLV--DASNPRAYPDFTWRSLL 329          
BLAST of CX047027 vs. ExPASy Swiss-Prot
Match: HY6H_HYONI (Hyoscyamine 6-dioxygenase OS=Hyoscyamus niger GN=H6H PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.959e-16
Identity = 55/188 (29.26%), Postives = 93/188 (49.47%), Query Frame = -1
Query:  325 PDLEDDYRKAMKEFAVELEKVAXXXXXXXXXXXXXXXXXLKKVFYGSKGPTFGTKVSNY-PPCPKPDLIKGLRAHTDAGGIILLFQDDEVSGLQ--LLKDDQWVDVPPMKHSIVINLGDQLEVITNGKYKSVLHRVIAQTEGNRMSIASFYNPGSDAVIYPAPALVEKEAVNSQVYPKFVFEDYMKLY 879
            P+    YR+ + +++VE+ K+                   K  ++ ++       ++NY PPCP P    G   H D   I LL QD  + GLQ  ++KD  W+ V P+  + V+NLG  L+VITN K++  +HRV+     +R+SIA+   P     I PA  L+ ++  N  +Y  + + ++  +Y
Sbjct:  148 PEKPAKYREVVAKYSVEVRKLTMRMLDYICEGLGL-----KLGYFDNELSQIQMMLTNYYPPCPDPSSTLGSGGHYDGNLITLLQQD--LPGLQQLIVKDATWIAVQPIPTAFVVNLGLTLKVITNEKFEGSIHRVVTDPTRDRVSIATLIGPDYSCTIEPAKELLNQD--NPPLYKPYSYSEFADIY 326          
BLAST of CX047027 vs. ExPASy Swiss-Prot
Match: ACCH3_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 4 OS=Arabidopsis thaliana GN=At1g06650 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.959e-16
Identity = 47/127 (37.01%), Postives = 75/127 (59.06%), Query Frame = -1
Query:  337 YPPCPKPDLIKGLRAHTDAGGIILLFQDDEVSGLQLLKDDQWVDVPPMKHSIVINLGDQLEVITNGKYKSVLHRVIA-QTEGNRMSIASFYNPG---SDAVIYPAPALVEKEAVNSQVYPKFVFEDY 705
            YPPCP+PDL  G   H+D   + +L  D ++ GLQ+ ++  W DVP +  +++IN+GD L++ITN K+ S+ HRV+A +    R+S+A F+  G   +  +  P   LV +E  N   Y +   +DY
Sbjct:  226 YPPCPEPDLTLGTSQHSDNSFLTVLLPD-QIEGLQVRREGHWFDVPHVSGALIINIGDLLQLITNDKFISLEHRVLANRATRARVSVACFFTTGVRPNPRMYGPIRELVSEE--NPPKYRETTIKDY 349          
The following BLAST results are available for this feature:
BLAST of CX047027 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
LDOX_VITVI9.822e-1932.70Leucoanthocyanidin dioxygenase OS=Vitis vinifera P... [more]
IDS3_HORVU2.858e-1834.232'-deoxymugineic-acid 2'-dioxygenase OS=Hordeum vu... [more]
G2OX_PHACN1.852e-1738.81Gibberellin 2-beta-dioxygenase OS=Phaseolus coccin... [more]
GAO1B_WHEAT1.568e-1634.38Gibberellin 20 oxidase 1-B OS=Triticum aestivum GN... [more]
G2OX1_ARATH1.568e-1635.56Gibberellin 2-beta-dioxygenase 1 OS=Arabidopsis th... [more]
GAO1D_WHEAT2.675e-1634.38Gibberellin 20 oxidase 1-D OS=Triticum aestivum GN... [more]
LDOX_MAIZE3.493e-1639.09Leucoanthocyanidin dioxygenase OS=Zea mays GN=A2 P... [more]
GAO1A_WHEAT4.563e-1634.38Gibberellin 20 oxidase 1-A OS=Triticum aestivum GN... [more]
HY6H_HYONI5.959e-1629.26Hyoscyamine 6-dioxygenase OS=Hyoscyamus niger GN=H... [more]
ACCH3_ARATH5.959e-1637.011-aminocyclopropane-1-carboxylate oxidase homolog ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_11F12_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-11F12-L24-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047027 ID=CX047027; Name=CX047027; organism=Citrus sinensis; type=EST; length=903bp
TTTAATGAGGCCAAATATAATCTTATATAATTTCATATGAAACAGGAGGA
ATACAGTATTCCATTTGGTCACTTTCTACAATAAATACCTGAAACACCAC
AACCACCGTCGACTTTGACTCCACAAGAACTATGATCAGTCCGAGCTTTC
GGCTTATTTTAAAAACTATATATGTTCCACACTAGCCAACACAAACAACT
CAGCTCTAACACCAAAGAGCCATAGGGGAACTCAAACAGTTGCAATAGGA
CCCAGATTCACAATGGTCTCCATGTTCTTCATGGCTTCAAACCTTGGCTC
CTTGGCCTGAAACTTCAGCCCAGCATAGAGTTTCATGTAATCCTCGAACA
CAAATTTCGGATAAACTTGGCTGTTCACAGCCTCCTTCTCCACCAATGCT
GGTGCCGGGTAGATCACAGCATCACTGCCTGGATTGTAAAATGATGCTAT
GGACATCCTGTTACCCTCTGTTTGAGCAATCACGCGATGTAGCACACTCT
TGTACTTGCCATTGGTTATCACCTCAAGTTGGTCACCGAGGTTGATGACA
ATGGAGTGTTTCATGGGTGGAACATCAACCCATTGGTCATCTTTGAGCAG
CTGGAGGCCACTGACTTCGTCATCTTGAAAGAGCAAGATGATGCCACCAG
CATCAGTATGGGCCCTAAGTCCCTTGATCAGATCTGGTTTTGGGCATGGA
GGGTAATTGCTGACCTTGGTGCCAAAGGTTGGTCCTTTGGACCCATAAAA
CACTTTCTTCAAATACCCTTCCTCCAGCCCAAGATTCTCACACAACAATT
CCAGAAGTTGCTCAGCAACCTTCTCCAATTCAACGGCAAATTCCTTCATT
GCCTTCCTGTAATCATCTTCAAGATCGGGGATTTCAGCCATGTTTGAAAC
AGG
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