CX047027

Overview
NameCX047027
Unique NameCX047027
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length903
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047027 vs. ExPASy Swiss-Prot
Match: ACCH2_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 2 OS=Arabidopsis thaliana GN=At1g06640 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.016e-15
Identity = 47/133 (35.34%), Postives = 75/133 (56.39%), Query Frame = -1
Query:  319 YPPCPKPDLIKGLRAHTDAGGIILLFQDDEVSGLQLLKDDQWVDVPPMKHSIVINLGDQLEVITNGKYKSVLHRVIA-QTEGNRMSIASFYN---PGSDAVIYPAPALVEKEAVNSQVYPKFVFEDYMKLYAG 705
            +PPCP+PDL  G   H+D G  + +   D + GLQ+ ++  W DVP +  +++IN+GD L++ITN K+ S+ HRV+A +    R+S+A F++     +  V  P   LV +E  N   Y +    DY   + G
Sbjct:  226 FPPCPEPDLTFGTSKHSD-GSFLTVLLPDNIEGLQVCREGYWFDVPHVPGALIINIGDLLQLITNDKFISLKHRVLANRATRARVSVACFFHTHVKPNPRVYGPIKELVSEE--NPPKYRETTIRDYATYFNG 355          
BLAST of CX047027 vs. ExPASy Swiss-Prot
Match: G2OX1_PEA (Gibberellin 2-beta-dioxygenase 1 OS=Pisum sativum GN=GA2OX1 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.734e-15
Identity = 48/132 (36.36%), Postives = 76/132 (57.58%), Query Frame = -1
Query:  337 KVSNYPPCPKPDL----IKGLRAHTDAGGIILLFQDDEVSGLQL-LKDDQWVDVPPMKHSIVINLGDQLEVITNGKYKSVLHRVIAQTEGNRMSIASFYNPGSDAVIYPAPALVEKEAVNSQVYPKFVFEDY 717
            +V++YP CP+  +    + G   HTD   II + + +  SG Q+ L+D  W+ VPP   S  IN+GD L+V+TNG++KSV HRV+A     R+S+  F  P     I P P+L++ +     +Y +F + +Y
Sbjct:  177 RVNHYPACPELAINGENLIGFGEHTDPQ-IISILRSNNTSGFQISLRDGSWISVPPDHSSFFINVGDSLQVMTNGRFKSVRHRVLANGIDPRLSMIYFCGPPLSEKIAPLPSLMKGK---ESLYKEFTWFEY 304          
BLAST of CX047027 vs. ExPASy Swiss-Prot
Match: G3O23_WHEAT (Gibberellin 3-beta-dioxygenase 2-3 OS=Triticum aestivum GN=GA3ox2-3 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.264e-15
Identity = 46/126 (36.51%), Postives = 68/126 (53.97%), Query Frame = -1
Query:  334 YPPCPKPDLIKGLRAHTDAGGIILLFQDDEVSGLQLLKD--DQWVDVPPMKHSIVINLGDQLEVITNGKYKSVLHRVIAQTEGNRMSIASFYNPGSDAVIYPAPALVEKEAVNSQVYPKFVFEDYM 705
            YP CP P    GL AHTD+G    + Q   V GLQL +   D+WV VP +  ++V+N+GD  +++TNG++ SV HR +   E +R+S+  F  P +   + P   L E  A     Y    + +YM
Sbjct:  214 YPKCPDPKRALGLIAHTDSGFFTFVLQS-LVPGLQLFRHGPDRWVTVPAVPGAMVVNVGDLFQILTNGRFHSVYHRAVVNRESDRISLGYFLGPPAHVKVAP---LREALAGTPAAYRAVTWPEYM 335          
BLAST of CX047027 vs. ExPASy Swiss-Prot
Match: G3O22_WHEAT (Gibberellin 3-beta-dioxygenase 2-2 OS=Triticum aestivum GN=GA3ox2-2 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 5.045e-15
Identity = 45/126 (35.71%), Postives = 68/126 (53.97%), Query Frame = -1
Query:  334 YPPCPKPDLIKGLRAHTDAGGIILLFQDDEVSGLQLLKD--DQWVDVPPMKHSIVINLGDQLEVITNGKYKSVLHRVIAQTEGNRMSIASFYNPGSDAVIYPAPALVEKEAVNSQVYPKFVFEDYM 705
            YP CP P    GL AHTD+G    + Q   V GLQL +   D+WV VP +  ++V+N+GD  +++TNG++ SV HR +   + +R+S+  F  P +   + P   L E  A     Y    + +YM
Sbjct:  214 YPKCPDPKRALGLIAHTDSGFFTFVLQS-LVPGLQLFRHGPDRWVTVPAVPGAMVVNVGDLFQILTNGRFHSVYHRAVVNRDSDRISLGYFLGPPAHVKVAP---LREALAGTPAAYRAVTWPEYM 335          
BLAST of CX047027 vs. ExPASy Swiss-Prot
Match: G3O21_WHEAT (Gibberellin 3-beta-dioxygenase 2-1 OS=Triticum aestivum GN=GA3ox2-1 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 5.045e-15
Identity = 45/126 (35.71%), Postives = 68/126 (53.97%), Query Frame = -1
Query:  334 YPPCPKPDLIKGLRAHTDAGGIILLFQDDEVSGLQLLKD--DQWVDVPPMKHSIVINLGDQLEVITNGKYKSVLHRVIAQTEGNRMSIASFYNPGSDAVIYPAPALVEKEAVNSQVYPKFVFEDYM 705
            YP CP P    GL AHTD+G    + Q   V GLQL +   D+WV VP +  ++V+N+GD  +++TNG++ SV HR +   + +R+S+  F  P +   + P   L E  A     Y    + +YM
Sbjct:  214 YPKCPDPKRALGLIAHTDSGFFTFVLQS-LVPGLQLFRHGPDRWVTVPAVPGAMVVNVGDLFQILTNGRFHSVYHRAVVNRDSDRISLGYFLGPPAHVKVAP---LREALAGTPAAYRAVTWPEYM 335          
BLAST of CX047027 vs. ExPASy Swiss-Prot
Match: G2OX2_ARATH (Gibberellin 2-beta-dioxygenase 2 OS=Arabidopsis thaliana GN=GA2OX2 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.588e-15
Identity = 49/131 (37.40%), Postives = 77/131 (58.78%), Query Frame = -1
Query:  337 KVSNYPPCPKP--DLIK-GLRAHTDAGGIILLFQDDEVSGLQL-LKDDQWVDVPPMKHSIVINLGDQLEVITNGKYKSVLHRVIAQTEGNRMSIASFYNPGSDAVIYPAPALVEKEAVNSQVYPKFVFEDY 717
            ++++YP   +    ++K G   HTD   II + + +  +GLQ+ +KD  WV VPP   S  IN+GD L+V+TNG++KSV HRV+A T  +R+S+  F  P     I P P LV ++  +  +Y +F +  Y
Sbjct:  185 RLNHYPAAEEEAEKMVKVGFGEHTDPQ-IISVLRSNNTAGLQICVKDGSWVAVPPDHSSFFINVGDALQVMTNGRFKSVKHRVLADTRRSRISMIYFGGPPLSQKIAPLPCLVPEQ--DDWLYKEFTWSQY 312          
BLAST of CX047027 vs. ExPASy Swiss-Prot
Match: IDS2_HORVU (Mugineic-acid 3-dioxygenase OS=Hordeum vulgare GN=IDS2 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.504e-14
Identity = 43/111 (38.74%), Postives = 60/111 (54.05%), Query Frame = -1
Query:  382 VSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDEVSGLQLLKDDQWVDVPPMKHSIVINLGDQLEVITNGKYKSVLHRVIAQTEGNRMSIASFYNPGSDAVIYPAPALVEKE 714
            ++ YPP P P    GL  H D   + +L     V GL++     W+ V P+ +S+VIN G QLEV+TNG  K+V HR        R+S+ASF  P  D V+ PA   V ++
Sbjct:  190 INYYPPSPNPSRTLGLPPHCDRDLMTVLLPG-AVPGLEIAYKGGWIKVQPVPNSLVINFGLQLEVVTNGYLKAVEHRAATNFAEPRLSVASFIVPADDCVVGPAEEFVSED 299          
BLAST of CX047027 vs. ExPASy Swiss-Prot
Match: G3OX4_ARATH (Gibberellin 3-beta-dioxygenase 4 OS=Arabidopsis thaliana GN=At1g80330 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.504e-14
Identity = 47/158 (29.75%), Postives = 84/158 (53.16%), Query Frame = -1
Query:  277 GSKGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDEVSGLQLLKDDQ-WVDVPPMKHSIVINLGDQLEVITNGKYKSVLHRVIAQTEGNRMSIASFY-NPGSDAVIYPAPALVEKEAVNSQVYPKFVFEDYMKLYAGLKFQAKEPRFEAMK 744
            GSK      ++++YP CP+P+   GL AHTD+  + +L Q +   GLQ+ +++  WV V P    +V+N+GD   +++NGK  SV+HR       +R+SIA  +  P  D  I P   L         +Y    +++Y++    +K++  +   +A++
Sbjct:  199 GSKVGRGAIRLNHYPVCPEPERAMGLAAHTDSTILTILHQSN-TGGLQVFREESGWVTVEPAPGVLVVNIGDLFHILSNGKIPSVVHRAKVNHTRSRISIAYLWGGPAGDVQIAPISKLT--GPAEPSLYRSITWKEYLQ----IKYEVFDKAMDAIR 349          
BLAST of CX047027 vs. ExPASy Swiss-Prot
Match: G3OX3_ARATH (Gibberellin 3-beta-dioxygenase 3 OS=Arabidopsis thaliana GN=At4g21690 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.270e-14
Identity = 47/189 (24.87%), Postives = 95/189 (50.26%), Query Frame = -1
Query:  334 AEIPDLEDDYRKAMKEFAVELEKVAXXXXXXXXXXXXXXXXXLKKVFYGSKGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDEVSGLQLLKDDQ----WVDVPPMKHSIVINLGDQLEVITNGKYKSVLHRVIAQTEGNRMSIASFYNPGSDAVIYPAPALVEKEAVNSQVYPKFVFEDYM 888
            AE  ++ ++Y+KAM + +  L  ++                   K   G+       ++++YP CP P L  GL  HTD+  + +L+Q + + GL++    +    W+ V P++ S+V+ +GD   +I+NG+++S +HR +     +R+S A F  P  +  I P    +  +  +  +Y + ++E+Y+
Sbjct:  152 AEFCNVMEEYQKAMDDLSHRL--ISMLMGSLGLTHEDLGWLVPDKTGSGTDSIQSFLQLNSYPVCPDPHLAMGLAPHTDSSLLTILYQGN-IPGLEIESPQEEGSRWIGVEPIEGSLVVIMGDLSHIISNGQFRSTMHRAVVNKTHHRVSAAYFAGPPKNLQIGP----LTSDKNHPPIYRRLIWEEYL 333          
BLAST of CX047027 vs. ExPASy Swiss-Prot
Match: GSL_ARATH (Probable 2-oxoacid dependent dioxygenase OS=Arabidopsis thaliana GN=GSL-OH PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.284e-14
Identity = 37/91 (40.66%), Postives = 59/91 (64.84%), Query Frame = -1
Query:  436 YPPCPKPDLIKGLRAHTDAGGIILLFQDDEVSGLQLLKDDQWVDVPPMKHSIVINLGDQLEVITNGKYKSVLHRVIAQ-TEGNRMSIASFY 705
            +PPCP+P+   G   HTD   + +L  D+   GLQ+L D  W+DVPP   +++ N+GD L++I+N K+ S+ HR++A   E  R+S+A F+
Sbjct:  216 FPPCPEPNRTFGGAQHTDRSFLTILLNDNN-GGLQVLYDGYWIDVPPNPEALIFNVGDFLQLISNDKFVSMEHRILANGGEEPRISVACFF 305          
The following BLAST results are available for this feature:
BLAST of CX047027 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
ACCH2_ARATH1.016e-1535.341-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
G2OX1_PEA1.734e-1536.36Gibberellin 2-beta-dioxygenase 1 OS=Pisum sativum ... [more]
G3O23_WHEAT2.264e-1536.51Gibberellin 3-beta-dioxygenase 2-3 OS=Triticum aes... [more]
G3O22_WHEAT5.045e-1535.71Gibberellin 3-beta-dioxygenase 2-2 OS=Triticum aes... [more]
G3O21_WHEAT5.045e-1535.71Gibberellin 3-beta-dioxygenase 2-1 OS=Triticum aes... [more]
G2OX2_ARATH6.588e-1537.40Gibberellin 2-beta-dioxygenase 2 OS=Arabidopsis th... [more]
IDS2_HORVU2.504e-1438.74Mugineic-acid 3-dioxygenase OS=Hordeum vulgare GN=... [more]
G3OX4_ARATH2.504e-1429.75Gibberellin 3-beta-dioxygenase 4 OS=Arabidopsis th... [more]
G3OX3_ARATH3.270e-1424.87Gibberellin 3-beta-dioxygenase 3 OS=Arabidopsis th... [more]
GSL_ARATH7.284e-1440.66Probable 2-oxoacid dependent dioxygenase OS=Arabid... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_11F12_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-11F12-L24-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047027 ID=CX047027; Name=CX047027; organism=Citrus sinensis; type=EST; length=903bp
TTTAATGAGGCCAAATATAATCTTATATAATTTCATATGAAACAGGAGGA
ATACAGTATTCCATTTGGTCACTTTCTACAATAAATACCTGAAACACCAC
AACCACCGTCGACTTTGACTCCACAAGAACTATGATCAGTCCGAGCTTTC
GGCTTATTTTAAAAACTATATATGTTCCACACTAGCCAACACAAACAACT
CAGCTCTAACACCAAAGAGCCATAGGGGAACTCAAACAGTTGCAATAGGA
CCCAGATTCACAATGGTCTCCATGTTCTTCATGGCTTCAAACCTTGGCTC
CTTGGCCTGAAACTTCAGCCCAGCATAGAGTTTCATGTAATCCTCGAACA
CAAATTTCGGATAAACTTGGCTGTTCACAGCCTCCTTCTCCACCAATGCT
GGTGCCGGGTAGATCACAGCATCACTGCCTGGATTGTAAAATGATGCTAT
GGACATCCTGTTACCCTCTGTTTGAGCAATCACGCGATGTAGCACACTCT
TGTACTTGCCATTGGTTATCACCTCAAGTTGGTCACCGAGGTTGATGACA
ATGGAGTGTTTCATGGGTGGAACATCAACCCATTGGTCATCTTTGAGCAG
CTGGAGGCCACTGACTTCGTCATCTTGAAAGAGCAAGATGATGCCACCAG
CATCAGTATGGGCCCTAAGTCCCTTGATCAGATCTGGTTTTGGGCATGGA
GGGTAATTGCTGACCTTGGTGCCAAAGGTTGGTCCTTTGGACCCATAAAA
CACTTTCTTCAAATACCCTTCCTCCAGCCCAAGATTCTCACACAACAATT
CCAGAAGTTGCTCAGCAACCTTCTCCAATTCAACGGCAAATTCCTTCATT
GCCTTCCTGTAATCATCTTCAAGATCGGGGATTTCAGCCATGTTTGAAAC
AGG
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